Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 1.4e-220 769.2 381 100.0
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 7.1e-159 564.3 376 76.3
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 1.7e-157 559.7 371 74.1
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 7.3e-156 554.3 366 74.9
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.4e-154 550.1 372 76.1
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 1.5e-153 546.6 372 75.8
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 2.0e-153 546.2 366 74.9
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 2.0e-153 546.2 373 75.3
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 1.3e-152 543.5 372 74.7
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 8.4e-152 540.8 370 73.8
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 2.7e-150 535.8 367 73.8
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 4.6e-150 535.0 376 71.8
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 6.0e-150 534.6 376 72.1
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 6.0e-150 534.6 373 70.8
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 7.8e-150 534.3 361 75.1
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 1.0e-149 533.9 361 74.8
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 1.3e-149 533.5 378 69.8
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 3.9e-149 531.9 368 72.8
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 5.1e-149 531.6 367 71.9
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.5e-148 530.0 379 70.4
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 1.9e-148 529.6 373 69.4
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.9e-148 529.6 370 72.4
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 2.5e-148 529.3 373 70.0
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 5.6e-148 528.1 380 70.5
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 2.8e-147 525.8 368 72.6
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 8.1e-147 524.2 367 71.4
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 9.0e-146 520.8 367 70.3
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 2.6e-145 519.2 380 67.9
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 5.8e-145 518.1 371 70.6
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 9.9e-145 517.3 366 71.3
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 1.3e-144 516.9 366 71.0
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 4.9e-144 515.0 391 68.3
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 6.4e-144 514.6 377 70.0
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 1.1e-143 513.8 345 72.8
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.1e-143 513.8 403 66.0
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 1.9e-143 513.1 345 73.0
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 5.4e-143 511.5 370 69.5
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 1.6e-142 510.0 476 59.5
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 4.6e-142 508.4 373 69.2
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 1.0e-141 507.3 377 69.2
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 5.1e-141 505.0 369 69.4
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 6.7e-141 504.6 423 63.4
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 8.7e-141 504.2 357 72.0
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 1.9e-140 503.1 375 70.1
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 7.4e-140 501.1 354 71.5
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 9.6e-140 500.7 375 69.6
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 9.6e-140 500.7 398 65.6
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 3.7e-139 498.8 378 67.5
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 8.1e-139 497.7 369 69.6
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 8.1e-139 497.7 383 67.6
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 4.0e-138 495.4 364 67.6
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 5.3e-138 495.0 370 69.2
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 9.0e-138 494.2 344 70.6
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 1.5e-137 493.4 354 69.2
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 4.5e-137 491.9 354 69.2
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 5.8e-137 491.5 383 66.3
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 1.3e-136 490.3 372 67.2
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 1.7e-136 490.0 369 69.9
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 4.9e-136 488.4 354 70.6
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 6.4e-136 488.0 404 64.1
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 8.4e-136 487.6 352 69.0
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 1.1e-135 487.3 325 73.2
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 1.9e-135 486.5 381 66.4
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 2.5e-135 486.1 325 72.9
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 4.2e-135 485.3 378 66.4
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 5.5e-135 485.0 373 70.0
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 7.1e-135 484.6 385 67.3
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 2.1e-134 483.0 369 69.1
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 1.8e-133 479.9 378 65.6
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 2.3e-133 479.6 325 72.6
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 3.9e-133 478.8 328 74.1
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 8.7e-133 477.6 364 66.8
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 8.7e-133 477.6 367 67.3
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 1.5e-132 476.9 350 71.1
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 1.5e-132 476.9 364 66.2
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 1.5e-132 476.9 370 67.0
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 1.9e-132 476.5 394 64.7
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 2.5e-132 476.1 364 69.0
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 9.6e-132 474.2 364 66.5
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 1.3e-131 473.8 368 66.8
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 1.6e-131 473.4 356 68.8
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 1.8e-130 469.9 379 65.4
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 4.0e-130 468.8 329 72.0
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 5.3e-130 468.4 355 66.2
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 1.2e-129 467.2 364 65.1
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 1.2e-129 467.2 364 65.1
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 5.5e-127 458.4 421 59.1
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 9.3e-127 457.6 330 69.4
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 1.0e-125 454.1 365 65.2
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 3.0e-125 452.6 373 62.5
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 5.1e-125 451.8 364 64.8
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 9.7e-124 447.6 389 61.2
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 5.9e-113 411.8 330 63.9
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 7.2e-111 404.8 320 65.6
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 4.5e-105 385.6 320 61.6
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.1e-103 380.9 316 64.6
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 1.6e-97 360.5 354 57.9
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 2.6e-97 359.8 253 70.4
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 7.7e-97 358.2 304 61.2
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 1.4e-93 347.4 344 53.8
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 1.3e-91 340.9 321 54.2
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 4.8e-91 339.0 274 64.2
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 5.9e-81 305.4 186 77.4
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 1.6e-78 297.4 219 69.9
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 4.7e-78 295.8 458 41.7
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.0e-69 268.1 189 72.0
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 5.0e-64 249.2 195 64.6
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 1.2e-62 244.6 166 73.5
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 4.3e-55 219.5 224 55.8
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 1.2e-54 218.0 434 36.9
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.2e-46 191.4 141 68.8
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 2.0e-36 157.5 139 58.3
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 1.6e-33 147.9 79 86.1
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 6.2e-22 109.4 349 26.4
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 1.3e-19 101.7 323 27.6
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 3.5e-17 93.6 181 35.4
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 3.9e-16 90.1 324 26.2
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 6.2e-14 82.8 204 28.4
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 2.4e-13 80.9 233 27.5
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 2.4e-13 80.9 200 27.0
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 3.1e-13 80.5 229 26.6
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 5.3e-13 79.7 179 29.6
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 5.3e-13 79.7 219 27.9
BraA03t12678Z Brassica rapa HOM05D006708 ORTHO05D008321 9.0e-13 79.0 237 26.6
BolC3t16526H Brassica oleracea HOM05D006708 ORTHO05D008321 1.2e-12 78.6 237 26.6
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 1.2e-12 78.6 184 28.3
Thhalv10022298m.g Eutrema salsugineum HOM05D006708 ORTHO05D008321 1.5e-12 78.2 235 25.1
C03p42560 Brassica napus HOM05D006708 ORTHO05D008321 2.0e-12 77.8 235 26.4
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 2.6e-12 77.4 198 28.3
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 3.4e-12 77.0 216 26.4
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 3.4e-12 77.0 176 26.7
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 4.5e-12 76.6 333 24.9
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 4.5e-12 76.6 223 26.9
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 4.5e-12 76.6 176 27.3
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 5.8e-12 76.3 176 26.7
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 7.6e-12 75.9 219 27.4
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 7.6e-12 75.9 176 26.7
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 1.0e-11 75.5 176 26.7
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 1.7e-11 74.7 174 28.2
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 1.7e-11 74.7 51 68.6
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 2.2e-11 74.3 176 28.4
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 2.9e-11 73.9 322 23.9
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 3.8e-11 73.6 189 27.5
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 5.0e-11 73.2 183 31.7
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 6.5e-11 72.8 201 25.4
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 2.5e-10 70.9 357 23.5
Cpa.g.sc146.18 Carica papaya HOM05D006708 ORTHO05D008321 3.2e-10 70.5 187 27.3
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 3.2e-10 70.5 198 29.3
Sc19g0002530 Simmondsia chinensis HOM05D006708 ORTHO05D008321 3.2e-10 70.5 189 28.0
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 6.1e-09 66.2 320 25.6
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 7.9e-09 65.9 232 25.4
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 3.0e-08 63.9 209 25.4
unitig_1.g29359 Utricularia gibba HOM05D006708 ORTHO05D008321 2.2e-06 57.8 109 28.4
unitig_747.g22054 Utricularia gibba HOM05D006708 ORTHO05D008321 2.2e-06 57.8 109 28.4
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 2.8e-06 57.4 396 23.2


User provided reference genes

Program Settings