Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1678.7 839 100.0
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1560.8 835 92.6
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1537.3 835 91.4
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1504.6 839 88.1
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1484.2 839 87.8
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1484.2 842 87.6
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1479.9 917 82.2
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1474.1 838 87.1
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1473.0 842 85.6
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1469.1 839 85.9
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1466.4 838 86.2
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1466.1 837 85.9
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1465.3 839 85.7
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1465.3 837 85.9
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1463.4 838 85.9
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1461.4 838 86.2
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1460.3 838 85.8
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1459.9 835 86.6
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1457.2 844 85.2
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1457.2 838 85.7
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1456.4 838 85.6
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1456.0 901 80.4
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1454.5 844 84.8
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1454.5 838 85.7
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1453.0 837 85.8
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1451.8 844 84.7
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1451.4 838 85.2
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1451.0 838 84.6
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1451.0 838 84.8
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1449.1 842 84.9
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1448.7 838 84.7
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1444.9 838 85.1
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1443.7 850 85.2
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1442.6 839 84.3
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1441.4 837 85.2
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1440.6 848 85.6
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1438.3 844 84.1
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1437.2 855 83.0
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1435.6 836 84.7
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1434.9 843 82.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1429.1 865 83.6
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1423.3 835 84.2
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1422.9 832 83.5
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1422.1 838 84.1
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1422.1 858 81.1
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1421.8 835 84.2
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1421.8 838 83.3
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1421.4 838 83.1
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1420.6 843 81.9
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1417.1 842 82.4
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1412.9 835 82.5
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1409.8 854 82.3
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1409.4 835 82.9
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1408.7 843 82.8
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1408.7 835 82.5
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1407.1 835 82.2
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1407.1 858 81.2
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1403.7 903 79.6
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1402.9 892 78.4
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1398.3 858 79.8
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1396.7 842 81.4
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1393.3 858 79.7
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1391.3 843 82.3
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1389.8 838 81.7
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1389.0 858 79.5
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1386.7 842 80.8
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1385.2 839 81.5
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1384.0 944 73.9
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1382.9 835 81.1
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1367.1 917 74.5
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1364.4 854 79.3
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1360.9 917 74.0
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1339.7 855 78.2
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1337.0 855 78.0
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1335.9 855 78.0
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1335.9 855 78.0
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1335.9 855 78.0
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1335.5 785 82.5
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1333.5 855 77.8
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1333.5 855 77.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1333.5 855 77.5
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1327.8 855 77.5
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1327.8 855 77.3
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1327.4 834 76.3
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1322.8 854 77.4
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1321.2 835 78.2
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1300.8 850 74.1
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 755 84.8
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1270.4 726 85.7
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1194.9 834 72.8
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1194.5 842 71.9
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1130.9 844 71.3
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1122.5 836 63.8
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 0.0e+00 1108.2 876 65.9
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1107.8 836 64.0
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1106.7 1134 56.4
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 0.0e+00 1100.5 842 70.9
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 2.0e-302 1042.3 622 81.7
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 3.3e-302 1041.6 835 60.0
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 2.3e-287 992.3 795 65.5
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.5e-286 989.6 726 72.5
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 3.7e-285 984.9 686 74.5
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.9e-249 866.3 602 71.8
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 2.4e-228 796.2 675 63.9
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.1e-224 783.1 472 80.7
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.8e-218 763.5 601 67.6
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 2.5e-209 733.0 461 82.0
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 4.9e-205 718.8 405 84.0
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 6.5e-205 718.4 425 84.7
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.2e-182 644.4 846 42.3
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.2e-180 635.2 362 88.7
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 2.2e-173 613.6 356 82.0
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 2.9e-173 613.2 337 90.2
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 7.7e-166 588.6 856 39.5
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 9.2e-143 511.9 825 36.8
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.7e-128 464.5 431 56.6
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.5e-121 441.4 593 46.9
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.5e-121 441.4 1003 31.2
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.2e-118 431.8 327 60.6
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.3e-117 427.6 260 78.5
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 4.7e-115 419.9 367 63.5
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 9.6e-100 369.0 329 55.3
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.4e-87 328.6 238 71.8
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 9.0e-82 309.3 165 90.3
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 5.9e-81 306.6 218 69.7
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 7.2e-79 299.7 158 84.8
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.0e-76 291.6 317 48.6
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 3.4e-44 184.5 97 89.7
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-39 169.1 101 79.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 7.2e-39 166.8 113 70.8
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.2e-37 160.6 116 67.2
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-33 149.1 98 77.6
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 1.0e-32 146.4 94 77.7
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 2.9e-32 144.8 85 83.5
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 7.3e-31 140.2 106 71.7
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-30 139.4 94 73.4
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.6e-30 139.0 168 51.8
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.6e-30 139.0 87 78.2
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 8.0e-30 136.7 105 67.6
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 2.0e-28 132.1 67 88.1
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.4e-28 131.3 187 47.6
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 7.5e-28 130.2 96 71.9
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.8e-28 129.8 125 61.6
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 2.9e-27 128.3 113 61.1
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.2e-26 124.8 100 67.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 3.2e-26 124.8 103 67.0
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 2.7e-25 121.7 80 68.8
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-24 119.0 96 66.7
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 2.5e-23 115.2 68 76.5
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 2.3e-21 108.6 61 78.7
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-19 102.4 82 68.3
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 2.9e-19 101.7 115 50.4
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 2.4e-18 98.6 52 88.5
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 7.1e-18 97.1 52 86.5
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 9.2e-18 96.7 192 35.4
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 2.5e-15 88.6 87 56.3
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 2.5e-15 88.6 87 56.3
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 7.3e-15 87.0 48 93.8
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 6.8e-13 80.5 50 78.0
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.7e-11 75.9 37 97.3
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 6.4e-11 73.9 79 51.9
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 2.7e-09 68.6 85 51.8
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.3e-07 61.6 35 82.9
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 7.3e-07 60.5 41 73.2
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 4.7e-06 57.8 95 41.1


User provided reference genes

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