Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 0.0e+00 1442.9 714 100.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.4e-224 782.7 724 57.9
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.1e-218 763.8 720 56.7
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 8.5e-214 747.7 726 54.7
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.8e-211 740.0 741 54.9
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 8.8e-211 737.6 741 54.8
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 5.9e-207 724.9 681 57.3
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.2e-204 717.2 725 53.9
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 4.7e-204 715.3 732 53.6
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.0e-203 712.6 746 52.0
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.5e-202 710.3 719 53.0
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.5e-202 710.3 728 53.2
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.3e-202 709.1 717 52.2
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 4.4e-202 708.8 714 52.9
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.3e-201 707.2 736 52.9
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 3.7e-201 705.7 598 61.2
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 6.3e-201 704.9 720 53.2
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 4.1e-200 702.2 851 47.8
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 5.9e-199 698.4 720 54.2
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.5e-197 693.7 696 52.6
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.7e-193 680.2 684 53.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 4.5e-191 672.2 737 50.1
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 7.7e-191 671.4 713 51.2
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 2.2e-190 669.8 723 51.3
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 6.5e-190 668.3 724 49.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 4.2e-189 665.6 726 50.3
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.7e-188 662.9 658 52.3
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 3.6e-188 662.5 709 52.0
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 6.1e-188 661.8 766 49.2
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.3e-187 659.8 711 51.8
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 3.0e-187 659.4 729 49.9
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 5.2e-187 658.7 701 50.9
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.2e-187 658.7 709 51.8
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 6.8e-187 658.3 681 51.5
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.6e-186 656.4 710 50.1
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 6.3e-185 651.7 662 52.4
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 9.1e-184 647.9 710 49.9
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.7e-183 646.4 672 51.8
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.9e-183 645.2 710 49.7
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 7.7e-183 644.8 733 49.1
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.3e-182 644.0 701 51.2
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.3e-182 644.0 702 50.7
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.7e-182 643.7 708 49.9
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 8.5e-182 641.3 689 51.5
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.5e-181 639.8 729 49.0
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 5.5e-181 638.6 727 48.7
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.4e-181 637.9 702 50.0
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.6e-180 637.1 698 50.3
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.8e-179 633.6 656 52.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 4.0e-179 632.5 684 51.3
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.0e-179 632.5 672 52.2
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.5e-178 630.6 727 49.5
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 4.4e-178 629.0 655 52.7
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 4.8e-177 625.5 669 52.9
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 8.3e-177 624.8 727 48.7
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 8.3e-177 624.8 727 49.0
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.8e-176 623.6 638 51.4
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.6e-175 620.5 672 51.5
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 4.5e-175 619.0 672 51.3
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.7e-174 617.1 694 50.4
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.0e-171 606.3 728 47.7
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.2e-171 605.5 658 50.9
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 8.9e-171 604.7 649 51.0
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.2e-170 604.4 605 53.1
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.2e-170 604.4 665 51.3
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.5e-170 604.0 707 47.9
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 2.8e-169 599.7 529 59.5
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 6.3e-169 598.6 652 49.4
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.8e-168 597.0 728 47.9
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 3.2e-168 596.3 646 50.2
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.7e-166 590.5 646 49.8
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 9.5e-165 584.7 658 49.5
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.6e-164 583.9 713 46.7
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.2e-161 573.5 667 46.8
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 2.9e-161 573.2 625 49.6
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.4e-160 570.1 633 48.0
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.7e-158 563.9 669 48.1
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.0e-158 563.1 694 45.5
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.3e-157 559.3 657 48.4
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 4.3e-157 559.3 684 45.2
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 6.4e-153 545.4 695 45.6
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.9e-152 543.9 713 45.4
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.2e-152 543.1 597 50.8
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.3e-150 537.7 626 47.8
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.9e-149 533.9 418 64.6
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 3.3e-149 533.1 715 44.6
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 2.1e-148 530.4 419 63.2
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 3.2e-144 516.5 687 42.9
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 3.5e-143 513.1 642 46.6
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 6.6e-142 508.8 705 43.7
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.3e-141 506.1 700 43.4
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 5.8e-138 495.7 537 50.7
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 4.9e-137 492.7 663 44.3
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 8.4e-137 491.9 532 50.4
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 2.1e-135 487.3 640 42.3
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.5e-133 480.3 591 47.2
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.5e-130 471.1 499 51.3
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.3e-129 468.0 575 45.0
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.2e-129 467.2 670 42.8
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.4e-128 463.8 442 56.8
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 7.9e-127 458.8 664 42.3
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 3.0e-126 456.8 655 42.1
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.9e-126 456.4 654 43.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 5.1e-126 456.1 692 42.1
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 8.7e-126 455.3 635 42.4
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.5e-125 453.8 662 41.8
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.5e-125 453.8 654 42.7
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.4e-123 447.2 652 41.9
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 9.0e-123 445.3 644 40.8
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 9.6e-117 425.2 691 38.5
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.4e-115 421.4 543 45.9
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.0e-114 417.5 398 53.8
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.9e-105 387.1 368 55.2
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.0e-105 386.3 700 35.4
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.5e-103 380.2 536 40.5
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.9e-102 376.7 454 46.5
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.6e-98 364.0 697 35.4
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 5.7e-93 346.3 365 51.8
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.3e-84 318.5 350 48.0
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.8e-84 317.4 680 34.1
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.7e-84 317.0 506 39.3
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 6.3e-84 316.2 295 55.6
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.5e-80 305.1 359 46.0
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 7.5e-77 292.7 665 31.1
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 6.5e-65 253.1 359 41.8
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.2e-62 243.4 168 71.4
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.2e-61 242.3 602 28.6
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.0e-57 229.2 462 32.0
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 8.9e-54 216.1 215 55.8
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.6e-53 214.5 142 68.3
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 3.3e-48 197.6 443 32.1
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.2e-47 195.7 239 44.4
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.2e-47 195.7 443 34.1
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-42 178.3 559 26.5
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.6e-42 177.2 237 43.0
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.7e-41 175.3 106 74.5
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.0e-41 173.7 239 42.3
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 6.2e-39 166.8 106 72.6
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 6.4e-36 156.8 203 42.9
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.6e-31 141.0 263 38.0
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.8e-30 138.7 125 54.4
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.6e-26 125.6 148 42.6
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 4.4e-21 107.5 153 41.2
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.2e-19 100.9 204 30.4
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.5e-18 97.8 192 32.3
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.5e-16 92.4 201 35.3
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 8.1e-15 86.7 147 38.8
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 3.1e-14 84.7 67 61.2
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 9.0e-14 83.2 169 31.4
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 1.2e-13 82.8 50 76.0
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.6e-13 81.6 203 31.0
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.8e-13 80.5 302 26.2
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 6.4e-12 77.0 76 51.3
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-11 76.3 82 52.4
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 9.3e-11 73.2 182 29.1
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 1.2e-10 72.8 50 72.0
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 2.7e-10 71.6 63 52.4
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.6e-07 62.4 36 66.7
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 2.1e-07 62.0 399 20.6
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.8e-07 60.8 41 61.0
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 5.3e-06 57.4 315 20.6


User provided reference genes

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