Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018776001 Vitis vinifera HOM05D005767 ORTHO05D006785 2.6e-236 821.6 401 100.0
CSS0010624 Camellia sinensis var. sinensis HOM05D005767 ORTHO05D006785 3.4e-180 635.2 392 77.6
Manes.01G146000 Manihot esculenta HOM05D005767 ORTHO05D006785 1.9e-178 629.4 387 77.5
TAR376G0924 Trochodendron aralioides HOM05D005767 ORTHO05D006785 1.0e-176 623.6 392 76.3
Dinv33631 Davidia involucrata HOM05D005767 ORTHO05D006785 6.7e-176 620.9 392 76.8
QL06p032910 Quercus lobata HOM05D005767 ORTHO05D006785 2.0e-175 619.4 388 76.5
COL.COLO4_21902 Corchorus olitorius HOM05D005767 ORTHO05D006785 2.9e-171 605.5 377 75.9
Rhsim10G0211700 Rhododendron simsii HOM05D005767 ORTHO05D006785 6.5e-171 604.4 408 72.5
Thecc.01G018100 Theobroma cacao HOM05D005767 ORTHO05D006785 1.4e-170 603.2 389 74.8
Nn1g05917 Nelumbo nucifera HOM05D005767 ORTHO05D006785 1.9e-170 602.8 393 73.8
CiPaw.07G058900 Carya illinoinensis HOM05D005767 ORTHO05D006785 5.5e-170 601.3 393 73.5
Cc07_g10770 Coffea canephora HOM05D005767 ORTHO05D006785 7.9e-169 597.4 397 72.0
Prupe.7G168600 Prunus persica HOM05D005767 ORTHO05D006785 7.9e-169 597.4 376 77.4
Gorai.007G194300 Gossypium raimondii HOM05D005767 ORTHO05D006785 5.7e-167 591.3 388 73.2
Ciclev10025146m.g Citrus clementina HOM05D005767 ORTHO05D006785 7.4e-167 590.9 392 72.7
Gohir.A11G175000 Gossypium hirsutum HOM05D005767 ORTHO05D006785 9.7e-167 590.5 388 73.5
MD02G1131900 Malus domestica HOM05D005767 ORTHO05D006785 9.7e-167 590.5 378 75.1
Potri.007G057400 Populus trichocarpa HOM05D005767 ORTHO05D006785 3.7e-166 588.6 392 70.9
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 6.3e-166 587.8 366 76.8
RcHm_v2.0_Chr2g0099381 Rosa chinensis HOM05D005767 ORTHO05D006785 2.4e-165 585.9 386 72.0
Cpa.g.sc6.256 Carica papaya HOM05D005767 ORTHO05D006785 3.5e-164 582.0 392 73.2
Nitab4.5_0006119g0040 Nicotiana tabacum HOM05D005767 ORTHO05D006785 4.5e-164 581.6 397 71.8
Sed0019779 Sechium edule HOM05D005767 ORTHO05D006785 7.7e-164 580.9 388 70.9
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 1.0e-163 580.5 398 71.9
CAN.G1735.5 Capsicum annuum HOM05D005767 ORTHO05D006785 2.9e-163 578.9 405 70.9
Lsat_1_v5_gn_4_144841 Lactuca sativa HOM05D005767 ORTHO05D006785 3.8e-163 578.6 378 72.5
FvH4_1g11761 Fragaria vesca HOM05D005767 ORTHO05D006785 6.5e-163 577.8 383 71.5
VMungo0251G0680 Vigna mungo HOM05D005767 ORTHO05D006785 8.5e-163 577.4 383 73.1
HanXRQChr09g0256711 Helianthus annuus HOM05D005767 ORTHO05D006785 2.5e-162 575.9 396 69.2
MELO3C007906.2 Cucumis melo HOM05D005767 ORTHO05D006785 3.2e-162 575.5 388 70.6
Sc16g0002260 Simmondsia chinensis HOM05D005767 ORTHO05D006785 3.2e-162 575.5 387 70.0
CsaV3_6G047130 Cucumis sativus L. HOM05D005767 ORTHO05D006785 1.6e-161 573.2 388 70.1
FAN19G2575 Fragaria x ananassa HOM05D005767 ORTHO05D006785 3.6e-161 572.0 383 70.8
Nitab4.5_0000438g0060 Nicotiana tabacum HOM05D005767 ORTHO05D006785 1.0e-160 570.5 412 68.4
Atru.chr3.804 Acer truncatum HOM05D005767 ORTHO05D006785 2.3e-160 569.3 395 71.1
Sabra07G0049300 Salix brachista HOM05D005767 ORTHO05D006785 4.0e-160 568.5 414 65.9
PSO541G2118 Papaver somniferum HOM05D005767 ORTHO05D006785 4.4e-159 565.1 405 67.9
Lj4g0015609 Lotus japonicus HOM05D005767 ORTHO05D006785 5.7e-159 564.7 382 71.7
SGA_v2.0_scaffold76G25121 Striga asiatica HOM05D005767 ORTHO05D006785 7.5e-159 564.3 403 69.0
TPR.G27975 Trifolium pratense HOM05D005767 ORTHO05D006785 2.8e-158 562.4 379 72.0
AUR62003364 Chenopodium quinoa HOM05D005767 ORTHO05D006785 3.7e-158 562.0 374 71.1
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 4.8e-158 561.6 407 68.1
Carub.0007s0418 Capsella rubella HOM05D005767 ORTHO05D006785 4.8e-158 561.6 382 68.8
Thhalv10024709m.g Eutrema salsugineum HOM05D005767 ORTHO05D006785 6.3e-158 561.2 393 67.7
Sopen03g006310 Solanum pennellii HOM05D005767 ORTHO05D006785 8.2e-158 560.8 405 68.6
Medtr8g075810 Medicago truncatula HOM05D005767 ORTHO05D006785 1.8e-157 559.7 379 71.8
ECA232G4495 Erigeron canadensis HOM05D005767 ORTHO05D006785 3.1e-157 558.9 388 69.3
Ah.03g148810 Amaranthus hybridus HOM05D005767 ORTHO05D006785 4.1e-157 558.5 387 68.7
Ca_22378_v3 Cicer arietinum L. HOM05D005767 ORTHO05D006785 4.1e-157 558.5 375 72.0
Sp7g33830 Schrenkiella parvula HOM05D005767 ORTHO05D006785 5.3e-157 558.1 389 68.4
AT4G36050 Arabidopsis thaliana HOM05D005767 ORTHO05D006785 2.7e-156 555.8 391 66.8
A01p02680 Brassica napus HOM05D005767 ORTHO05D006785 3.5e-156 555.4 389 68.1
AL7G15000 Arabidopsis lyrata HOM05D005767 ORTHO05D006785 5.9e-156 554.7 393 65.9
C01p02980 Brassica napus HOM05D005767 ORTHO05D006785 5.9e-156 554.7 392 67.6
Psat4g100320 Pisum sativum HOM05D005767 ORTHO05D006785 7.7e-156 554.3 378 71.4
BraA01t00254Z Brassica rapa HOM05D005767 ORTHO05D006785 1.3e-155 553.5 394 67.5
AUR62029469 Chenopodium quinoa HOM05D005767 ORTHO05D006785 1.3e-155 553.5 387 68.5
Duzib147G1641 Durio zibethinus HOM05D005767 ORTHO05D006785 2.9e-155 552.4 388 70.1
PGR119G2148 Punica granatum HOM05D005767 ORTHO05D006785 2.5e-154 549.3 393 69.0
MSTRG.23406 Avicennia marina HOM05D005767 ORTHO05D006785 7.2e-154 547.7 401 66.8
Solyc03g033530.4 Solanum lycopersicum HOM05D005767 ORTHO05D006785 7.2e-154 547.7 405 68.4
BolC1t00284H Brassica oleracea HOM05D005767 ORTHO05D006785 2.7e-153 545.8 424 63.4
ClCG01G020330 Citrullus lanatus HOM05D005767 ORTHO05D006785 2.7e-153 545.8 448 61.4
Hund16493 Selenicereus undatus HOM05D005767 ORTHO05D006785 3.6e-153 545.4 391 66.8
BcaNung00769 Brassica carinata HOM05D005767 ORTHO05D006785 8.0e-153 544.3 391 67.3
Peaxi162Scf00050g00215 Petunia axillaris HOM05D005767 ORTHO05D006785 8.0e-153 544.3 375 71.5
arahy.Tifrunner.gnm1.ann1.G0D851 Arachis hypogaea HOM05D005767 ORTHO05D006785 1.0e-152 543.9 378 70.4
TWI73G0295 Tripterygium wilfordii HOM05D005767 ORTHO05D006785 1.4e-152 543.5 410 68.3
Aa31LG6G13010 Aethionema arabicum HOM05D005767 ORTHO05D006785 1.8e-152 543.1 393 67.2
arahy.Tifrunner.gnm1.ann1.12F6XV Arachis hypogaea HOM05D005767 ORTHO05D006785 1.8e-152 543.1 378 70.1
FAN26G2808 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.2e-151 540.4 429 63.6
Migut.N01741 Erythranthe guttata HOM05D005767 ORTHO05D006785 1.7e-150 536.6 393 66.2
vmacro22135 Vaccinium macrocarpon HOM05D005767 ORTHO05D006785 2.4e-149 532.7 394 66.5
Glyma.02G048200 Glycine max HOM05D005767 ORTHO05D006785 3.8e-147 525.4 341 74.8
Phvul.003G261600 Phaseolus vulgaris HOM05D005767 ORTHO05D006785 5.5e-146 521.5 397 67.3
SHI08521 Sapria himalayana HOM05D000565 ORTHO05D002009 8.0e-145 517.7 362 68.8
HPP92_005447 Vanilla planifolia HOM05D005767 ORTHO05D006785 9.8e-143 510.8 381 64.8
Lj2C469G1 Lonicera japonica HOM05D005767 ORTHO05D006785 5.4e-141 505.0 321 75.4
FAN26G3405 Fragaria x ananassa HOM05D005767 ORTHO05D006785 4.5e-140 501.9 404 62.6
CDE04G0100 Ceratophyllum demersum HOM05D005767 ORTHO05D006785 9.8e-135 484.2 388 61.3
Os09g0536000 Oryza sativa ssp. japonica HOM05D005767 ORTHO05D006785 2.4e-133 479.6 370 62.4
ATR0810G226 Amborella trichopoda HOM05D005767 ORTHO05D006785 5.2e-128 461.8 323 68.4
Hma1.2p1_1115F.1_g258820 Hydrangea macrophylla HOM05D005767 ORTHO05D006785 8.3e-126 454.5 322 68.9
Gohir.D11G182500 Gossypium hirsutum HOM05D005767 ORTHO05D006785 3.2e-125 452.6 306 70.6
MBI09_g09407_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 1.1e-120 437.6 323 65.0
unitig_32.g10945 Utricularia gibba HOM05D005767 ORTHO05D006785 7.1e-117 424.9 386 55.2
SMO356G0595 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 2.3e-115 419.9 418 53.3
Mapoly0107s0007 Marchantia polymorpha HOM05D005767 ORTHO05D006785 4.0e-112 409.1 376 53.5
Pp3c17_13320 Physcomitrium patens HOM05D005767 ORTHO05D006785 3.3e-106 389.4 383 51.2
Actinidia22973 Actinidia chinensis HOM05D005767 ORTHO05D006785 8.9e-104 381.3 391 54.7
Lalb_Chr05g0229861 Lupinus albus HOM05D005767 ORTHO05D006785 2.6e-103 379.8 253 72.3
Oeu035312.2 Olea europaea HOM05D005767 ORTHO05D006785 9.3e-85 318.2 213 66.7
FAN28G0764 Fragaria x ananassa HOM05D005767 ORTHO05D006785 9.3e-77 291.6 217 65.9
Eucgr.I02343 Eucalyptus grandis HOM05D005767 ORTHO05D006785 5.9e-63 245.7 168 66.7
Psat7g239080 Pisum sativum HOM05D005767 ORTHO05D006785 1.2e-60 238.0 163 72.4
SMO290G0007 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 6.3e-57 225.7 228 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3375 Anthoceros agrestis HOM05D005767 ORTHO05D006785 3.2e-53 213.4 194 52.1
CBR_g18710 Chara braunii HOM05D005767 ORTHO05D006785 1.5e-50 204.5 250 44.4
Lalb_Chr05g0229851 Lupinus albus HOM05D005767 ORTHO05D006785 1.3e-46 191.4 140 65.0
MBI09_g45348_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 1.6e-44 184.5 132 69.7
Cre12.g532750 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 2.2e-41 174.1 286 40.2
Glyma.16G128500 Glycine max HOM05D005767 ORTHO05D006785 1.1e-40 171.8 218 45.9
Lsat_1_v5_gn_9_7060 Lactuca sativa HOM05D005767 ORTHO05D006785 1.4e-40 171.4 218 45.0
SEGI_12703 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 2.4e-40 170.6 134 56.7
Potri.005G113301 Populus trichocarpa HOM05D005767 ORTHO05D006785 1.2e-39 168.3 269 39.0
MCO08G331 Micromonas commoda HOM05D005767 ORTHO05D006785 5.9e-39 166.0 336 33.6
SMO356G0427 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 7.0e-32 142.5 142 49.3
SMO290G0017 Selaginella moellendorffii HOM05D001672 ORTHO05D006785 1.1e-29 135.2 245 40.0
Cfa024213 Carpinus fangiana HOM05D005767 ORTHO05D006785 1.5e-29 134.8 313 32.6
SEGI_01145 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 2.3e-27 127.5 121 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1514 Anthoceros agrestis HOM05D005767 ORTHO05D006785 6.8e-27 125.9 354 27.7
arahy.Tifrunner.gnm1.ann1.S1GY7D Arachis hypogaea HOM05D005767 ORTHO05D006785 1.2e-26 125.2 168 43.5
MD15G1245100 Malus domestica HOM05D005767 ORTHO05D006785 1.2e-26 125.2 145 53.1
Sc16g0002220 Simmondsia chinensis HOM05D005767 ORTHO05D006785 1.2e-26 125.2 91 69.2
Psat7g239040 Pisum sativum HOM05D005767 ORTHO05D006785 8.3e-25 119.0 70 75.7
Cre07.g350550 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 6.6e-22 109.4 280 30.4
Cre12.g534151 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 6.6e-22 109.4 304 30.3
MD15G1244900 Malus domestica HOM05D005767 ORTHO05D006785 6.1e-20 102.8 88 59.1
Atru.chr1.1154_Atru.chr1.1155 Acer truncatum HOM05D005620 ORTHO05D002193 4.0e-19 100.1 291 29.9
CBR_g48654 Chara braunii HOM05D005767 ORTHO05D006785 3.4e-18 97.1 206 31.1
Pp3c3_16930 Physcomitrium patens HOM05D005767 ORTHO05D006785 1.7e-17 94.7 406 25.4
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 2.2e-17 94.4 289 28.4
FvH4_6g24881 Fragaria vesca HOM05D005620 ORTHO05D002193 2.9e-17 94.0 297 28.3
CANSAT80G0060 Cannabis sativa HOM05D005620 ORTHO05D002193 4.9e-17 93.2 290 27.9
CANSAT80G0759 Cannabis sativa HOM05D005620 ORTHO05D002193 4.9e-17 93.2 290 27.9
CSS0011392 Camellia sinensis var. sinensis HOM05D005620 ORTHO05D002193 6.4e-17 92.8 295 27.5
CARHR244450 Cardamine hirsuta HOM05D005767 ORTHO05D006785 6.4e-17 92.8 70 57.1
SMO356G0296 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 6.4e-17 92.8 100 46.0
Sed0006254 Sechium edule HOM05D005620 ORTHO05D002193 1.4e-16 91.7 293 27.0
Psat6g118160 Pisum sativum HOM05D005620 ORTHO05D002193 1.8e-16 91.3 287 27.2
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 3.2e-16 90.5 297 28.3
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 3.2e-16 90.5 297 28.6
CDE04G0757 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 3.2e-16 90.5 291 27.1
RcHm_v2.0_Chr3g0484531 Rosa chinensis HOM05D005620 ORTHO05D002193 4.1e-16 90.1 292 29.1
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 5.4e-16 89.7 297 28.3
BcaB01g03467 Brassica carinata HOM05D005620 ORTHO05D002193 7.0e-16 89.4 297 27.9
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 9.2e-16 89.0 297 28.3
TWI53G0502 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 9.2e-16 89.0 297 27.6
Medtr1g051380 Medicago truncatula HOM05D005620 ORTHO05D002193 1.2e-15 88.6 300 27.3
Cfa016753 Carpinus fangiana HOM05D005620 ORTHO05D002193 1.6e-15 88.2 285 27.7
MD12G1086000 Malus domestica HOM05D005620 ORTHO05D002193 1.6e-15 88.2 299 29.1
Cpa.g.sc120.9 Carica papaya HOM05D005620 ORTHO05D002193 2.0e-15 87.8 284 27.5
TWI53G0092 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 3.5e-15 87.0 297 27.3
EL10Ac3g07159 Beta vulgaris HOM05D005620 ORTHO05D002193 4.6e-15 86.7 299 26.8
Prupe.7G050000 Prunus persica HOM05D005620 ORTHO05D002193 7.8e-15 85.9 294 26.9
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 7.8e-15 85.9 297 27.6
Glyma.02G191100 Glycine max HOM05D005620 ORTHO05D002193 1.0e-14 85.5 298 26.8
Lj5g0010383 Lotus japonicus HOM05D005620 ORTHO05D002193 1.3e-14 85.1 294 26.5
Sc19g0008380 Simmondsia chinensis HOM05D005620 ORTHO05D002193 1.3e-14 85.1 297 26.3
Eucgr.K01579 Eucalyptus grandis HOM05D005620 ORTHO05D002193 1.7e-14 84.7 294 25.9
Actinidia09295 Actinidia chinensis HOM05D005620 ORTHO05D002193 2.3e-14 84.3 292 27.1
CAN.G594.8 Capsicum annuum HOM05D005767 ORTHO05D006785 2.3e-14 84.3 67 62.7
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 2.3e-14 84.3 287 26.5
Aqoxy1G00331 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 3.0e-14 84.0 286 27.3
Oeu023137.3 Olea europaea HOM05D005620 ORTHO05D002193 3.0e-14 84.0 297 26.9
ECA247G2062 Erigeron canadensis HOM05D005620 ORTHO05D002193 3.9e-14 83.6 297 26.6
GSVIVG01033553001 Vitis vinifera HOM05D005620 ORTHO05D002193 3.9e-14 83.6 292 26.7
AagrBONN_evm.TU.Sc2ySwM_369.93 Anthoceros agrestis HOM05D005620 ORTHO05D002193 5.0e-14 83.2 292 25.0
Lsat_1_v5_gn_9_32000 Lactuca sativa HOM05D005620 ORTHO05D002193 5.0e-14 83.2 290 26.2
Mapoly0057s0088 Marchantia polymorpha HOM05D005620 ORTHO05D002193 8.6e-14 82.4 294 27.2
HanXRQChr10g0298661 Helianthus annuus HOM05D005620 ORTHO05D002193 1.1e-13 82.0 297 26.3
Phvul.007G249300 Phaseolus vulgaris HOM05D005620 ORTHO05D002193 1.1e-13 82.0 299 27.1
Sc13g0001490 Simmondsia chinensis HOM05D005620 ORTHO05D002193 1.5e-13 81.6 296 26.4
PRCOL_00006578 Prasinoderma coloniale HOM05D005620 ORTHO05D002193 2.5e-13 80.9 281 25.6
Sabra16G0047700 Salix brachista HOM05D005620 ORTHO05D002193 2.5e-13 80.9 296 26.4
Os01g0801000 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 5.6e-13 79.7 289 26.0
Lalb_Chr02g0156421 Lupinus albus HOM05D005620 ORTHO05D002193 9.5e-13 79.0 299 26.8
DCAR_019347 Daucus carota HOM05D005620 ORTHO05D002193 1.2e-12 78.6 283 27.2
Sopen04g008610 Solanum pennellii HOM05D005620 ORTHO05D002193 4.7e-12 76.6 296 26.0
arahy.Tifrunner.gnm1.ann1.R2J7CI Arachis hypogaea HOM05D005767 ORTHO05D006785 1.1e-11 75.5 41 75.6
Solyc04g016530.3 Solanum lycopersicum HOM05D005620 ORTHO05D002193 1.1e-11 75.5 296 25.7
CDE07G1402 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 4.0e-11 73.6 283 25.4
arahy.Tifrunner.gnm1.ann1.JHI6E6 Arachis hypogaea HOM05D005767 ORTHO05D006785 1.2e-10 72.0 40 75.0
Aqoxy5G03576 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 3.2e-08 63.9 207 27.1
MBI09_g09411_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 4.1e-08 63.5 36 80.6
SGA_v2.0_scaffold94G28513 Striga asiatica HOM05D005620 ORTHO05D002193 1.6e-07 61.6 208 25.0
Eucgr.I02345 Eucalyptus grandis HOM05D005767 ORTHO05D006785 6.0e-07 59.7 36 75.0
SEGI_05705 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 2.3e-06 57.8 91 34.1
SMO235G0003 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 3.0e-06 57.4 38 63.2
Dinv30296 Davidia involucrata HOM05D005620 ORTHO05D002193 3.9e-06 57.0 85 40.0


User provided reference genes

Program Settings