Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015738001 Vitis vinifera HOM05D001816 ORTHO05D019076 1.8e-44 182.2 92 100.0
GSVIVG01024566001 Vitis vinifera HOM05D001816 ORTHO05D019076 4.2e-33 144.4 84 88.1
GSVIVG01022996001 Vitis vinifera HOM05D001816 ORTHO05D019076 2.0e-27 125.6 80 81.2
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 9.8e-22 106.7 56 91.1
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 1.3e-21 106.3 56 87.5
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 1.7e-21 105.9 56 87.5
MELO3C000756.2 Cucumis melo HOM05D001816 ORTHO05D019076 3.7e-21 104.8 57 86.0
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 3.7e-21 104.8 56 89.3
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 6.3e-21 104.0 56 85.7
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 6.3e-21 104.0 56 87.5
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.4e-20 102.8 56 87.5
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 1.4e-20 102.8 56 85.7
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 1.4e-20 102.8 56 85.7
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 1.8e-20 102.4 56 85.7
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 2.4e-20 102.1 56 85.7
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 2.4e-20 102.1 61 77.0
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 3.1e-20 101.7 56 83.9
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 4.1e-20 101.3 56 83.9
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 5.4e-20 100.9 56 82.1
Actinidia27039 Actinidia chinensis HOM05D001816 ORTHO05D002001 5.4e-20 100.9 56 82.1
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 5.4e-20 100.9 56 85.7
Cc11_g00060 Coffea canephora HOM05D001816 ORTHO05D002001 7.0e-20 100.5 57 78.9
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 7.0e-20 100.5 56 83.9
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 7.0e-20 100.5 56 83.9
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 7.0e-20 100.5 56 83.9
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.2e-19 99.8 56 80.4
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 1.2e-19 99.8 56 83.9
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 1.2e-19 99.8 56 85.7
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 1.2e-19 99.8 56 83.9
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 1.2e-19 99.8 56 82.1
Gohir.D12G138232 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.2e-19 99.8 58 82.8
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.2e-19 99.8 58 82.8
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 1.2e-19 99.8 57 82.5
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 2.7e-19 98.6 56 80.4
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 2.7e-19 98.6 58 81.0
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 2.7e-19 98.6 56 80.4
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 2.7e-19 98.6 56 80.4
Cpa.g.sc1758.1 Carica papaya HOM05D001816 ORTHO05D002001 3.5e-19 98.2 56 76.8
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 3.5e-19 98.2 58 81.0
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 3.5e-19 98.2 58 81.0
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 3.5e-19 98.2 56 80.4
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 3.5e-19 98.2 56 80.4
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 3.5e-19 98.2 56 82.1
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 4.5e-19 97.8 56 80.4
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 4.5e-19 97.8 56 80.4
Glyma.12G027850 Glycine max HOM05D001816 ORTHO05D002001 4.5e-19 97.8 56 82.1
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 4.5e-19 97.8 58 81.0
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 5.9e-19 97.4 56 76.8
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 5.9e-19 97.4 56 80.4
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 5.9e-19 97.4 56 78.6
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 7.7e-19 97.1 56 76.8
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 1.0e-18 96.7 56 76.8
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.0e-18 96.7 56 82.1
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 1.3e-18 96.3 56 78.6
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.3e-18 96.3 58 79.3
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 1.3e-18 96.3 56 76.8
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 1.3e-18 96.3 56 80.4
Oeu027898.1 Olea europaea HOM05D001816 ORTHO05D002001 1.3e-18 96.3 56 76.8
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 1.3e-18 96.3 56 78.6
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 1.3e-18 96.3 56 76.8
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 2.2e-18 95.5 56 78.6
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 2.2e-18 95.5 56 78.6
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 2.2e-18 95.5 56 78.6
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 2.2e-18 95.5 56 78.6
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 2.9e-18 95.1 58 77.6
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 2.9e-18 95.1 56 78.6
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 2.9e-18 95.1 56 75.0
PSO063G5047 Papaver somniferum HOM05D001816 ORTHO05D002001 2.9e-18 95.1 56 76.8
PSO063G5328 Papaver somniferum HOM05D001816 ORTHO05D002001 2.9e-18 95.1 56 76.8
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 2.9e-18 95.1 56 76.8
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 2.9e-18 95.1 56 76.8
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 3.8e-18 94.7 56 75.0
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 5.0e-18 94.4 56 78.6
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 6.5e-18 94.0 63 66.7
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 6.5e-18 94.0 56 73.2
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 6.5e-18 94.0 56 76.8
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 8.5e-18 93.6 56 75.0
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 1.1e-17 93.2 76 61.8
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 1.1e-17 93.2 56 75.0
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.5e-17 92.8 56 76.8
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.5e-17 92.0 56 76.8
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 2.5e-17 92.0 56 76.8
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 2.5e-17 92.0 56 76.8
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 2.5e-17 92.0 56 73.2
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 3.2e-17 91.7 57 71.9
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 3.2e-17 91.7 57 71.9
C05p34040 Brassica napus HOM05D001816 ORTHO05D002001 3.2e-17 91.7 57 71.9
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 3.2e-17 91.7 57 71.9
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 3.2e-17 91.7 57 71.9
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.2e-17 91.7 56 75.0
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 3.2e-17 91.7 57 71.9
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 3.2e-17 91.7 56 75.0
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 3.2e-17 91.7 56 78.6
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 4.2e-17 91.3 56 75.0
Medtr4g074670 Medicago truncatula HOM05D001816 ORTHO05D002001 5.5e-17 90.9 56 75.0
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 5.5e-17 90.9 56 75.0
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 5.5e-17 90.9 58 75.9
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 7.2e-17 90.5 57 70.2
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 7.2e-17 90.5 56 76.8
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 7.2e-17 90.5 56 73.2
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 7.2e-17 90.5 56 76.8
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 9.5e-17 90.1 57 70.2
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 9.5e-17 90.1 57 70.2
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 9.5e-17 90.1 57 70.2
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 9.5e-17 90.1 57 70.2
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 9.5e-17 90.1 57 70.2
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 9.5e-17 90.1 57 70.2
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 9.5e-17 90.1 57 70.2
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 9.5e-17 90.1 57 70.2
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 9.5e-17 90.1 57 70.2
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 1.2e-16 89.7 57 70.2
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 1.2e-16 89.7 57 70.2
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 1.2e-16 89.7 56 73.2
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 1.6e-16 89.4 56 73.2
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 1.6e-16 89.4 57 68.4
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 1.6e-16 89.4 57 70.2
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 1.6e-16 89.4 57 68.4
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 1.6e-16 89.4 57 68.4
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.6e-16 89.4 57 68.4
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 2.1e-16 89.0 56 71.4
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 2.8e-16 88.6 56 71.4
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 4.7e-16 87.8 56 71.4
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 4.7e-16 87.8 56 71.4
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 4.7e-16 87.8 57 68.4
BcaC05g27449 Brassica carinata HOM05D001816 ORTHO05D002001 6.1e-16 87.4 57 70.2
BolC5t32139H Brassica oleracea HOM05D001816 ORTHO05D002001 6.1e-16 87.4 57 70.2
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.0e-15 86.7 56 73.2
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 1.0e-15 86.7 56 69.6
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 1.4e-15 86.3 56 71.4
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.4e-15 86.3 56 71.4
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.4e-15 86.3 56 71.4
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.4e-15 86.3 56 71.4
Hma1.2p1_0080F.1_g042160 Hydrangea macrophylla HOM05D001816 ORTHO05D019076 1.4e-15 86.3 55 74.5
Sc06g0002420 Simmondsia chinensis HOM05D001816 ORTHO05D002001 1.4e-15 86.3 56 71.4
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 2.3e-15 85.5 56 71.4
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 3.0e-15 85.1 56 67.9
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 5.2e-15 84.3 56 71.4
Hma1.2p1_0003F.1_g003750 Hydrangea macrophylla HOM05D001816 ORTHO05D019076 5.2e-15 84.3 55 70.9
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 6.8e-15 84.0 78 56.4
Hma1.2p1_0061F.1_g034040 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 1.5e-14 82.8 89 52.8
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 2.0e-14 82.4 56 67.9
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 4.4e-14 81.3 56 73.2
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 7.5e-14 80.5 56 69.6
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 7.5e-14 80.5 56 64.3
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 9.8e-14 80.1 56 64.3
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 2.2e-13 79.0 56 67.9
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.2e-13 79.0 56 67.9
PRCOL_00001517 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 2.4e-12 75.5 56 58.9
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 2.3e-10 68.9 56 64.3
MCO03G183 Micromonas commoda HOM05D001816 ORTHO05D002001 2.9e-10 68.6 57 50.9
Cre02.g143200 Chlamydomonas reinhardtii HOM05D001816 ORTHO05D002001 5.0e-10 67.8 49 65.3
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 4.3e-09 64.7 58 60.3
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 2.3e-07 58.9 32 84.4
Psat5g191680 Pisum sativum HOM05D003495 ORTHO05D004159 4.0e-07 58.2 33 75.8
ECA246G0614 Erigeron canadensis HOM05D001816 ORTHO05D002001 2.0e-06 55.8 39 64.1
MBI12_g22457_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 7.5e-06 53.9 30 83.3


User provided reference genes

Program Settings