Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 2.3e-125 452.2 224 100.0
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 5.0e-104 381.3 224 80.8
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.2e-102 376.7 219 81.7
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.4e-101 373.2 216 82.4
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.4e-101 373.2 216 82.4
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.8e-101 372.9 224 77.7
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 3.0e-101 372.1 224 80.4
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 4.0e-101 371.7 224 79.0
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 5.2e-101 371.3 224 79.9
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 6.8e-101 370.9 216 81.9
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 8.8e-101 370.5 225 79.1
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 2.0e-100 369.4 224 79.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 2.6e-100 369.0 226 78.8
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 3.4e-100 368.6 223 78.5
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 4.4e-100 368.2 224 77.7
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 4.4e-100 368.2 224 78.1
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 4.4e-100 368.2 216 80.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 9.8e-100 367.1 224 77.7
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.7e-99 366.3 224 77.2
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.1e-98 363.6 224 77.2
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 5.4e-98 361.3 224 76.8
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 5.4e-98 361.3 224 76.8
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 7.0e-98 360.9 219 77.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 7.0e-98 360.9 216 78.7
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.2e-97 360.1 224 77.2
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 2.0e-97 359.4 224 77.2
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 2.7e-97 359.0 218 77.5
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 5.9e-97 357.8 224 75.4
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 3.8e-96 355.1 224 74.6
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.0e-96 354.8 223 75.3
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 8.5e-96 354.0 224 74.1
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.9e-95 352.8 251 70.9
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-95 352.8 224 73.2
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.2e-95 352.1 261 67.8
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.2e-95 352.1 261 67.8
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 4.2e-95 351.7 219 75.3
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.2e-95 351.7 224 72.8
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 5.5e-95 351.3 224 72.8
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 9.4e-95 350.5 224 73.7
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.2e-94 350.1 216 77.8
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.7e-94 349.0 237 72.2
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 2.7e-94 349.0 220 74.5
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 3.6e-94 348.6 224 75.4
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 6.1e-94 347.8 224 75.4
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 6.8e-93 344.4 215 74.0
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.2e-91 339.3 224 73.2
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 3.7e-91 338.6 220 72.3
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 3.7e-91 338.6 223 74.9
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.1e-90 337.0 224 71.9
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.1e-90 335.1 220 72.3
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 7.0e-90 334.3 220 70.9
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.0e-89 332.8 224 71.0
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.7e-89 332.4 220 70.9
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 5.9e-89 331.3 220 71.4
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.0e-88 330.5 224 68.3
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.7e-88 329.7 224 68.3
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.1e-87 327.0 224 68.8
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.1e-87 327.0 225 70.2
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.2e-86 323.6 225 70.2
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.8e-86 322.4 203 76.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 6.1e-86 321.2 216 68.5
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.8e-85 319.7 236 67.4
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.3e-85 319.3 219 68.5
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 3.0e-85 318.9 216 69.4
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 4.0e-85 318.5 220 67.3
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 6.8e-85 317.8 216 68.5
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.5e-84 316.6 216 69.0
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.5e-84 316.6 216 72.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 3.4e-84 315.5 216 69.0
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 3.4e-84 315.5 216 69.0
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 4.4e-84 315.1 218 67.0
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 5.7e-84 314.7 222 66.2
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 5.7e-84 314.7 218 67.4
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 7.5e-84 314.3 216 66.7
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 7.5e-84 314.3 216 68.5
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.3e-83 313.5 253 62.1
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.7e-83 313.2 218 67.4
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 2.2e-83 312.8 219 65.8
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 3.7e-83 312.0 220 65.0
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 4.9e-83 311.6 266 59.0
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-82 309.7 222 61.7
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 3.2e-82 308.9 218 66.1
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 4.1e-82 308.5 217 64.1
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.0e-82 307.8 220 64.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 9.2e-82 307.4 216 64.4
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 9.2e-82 307.4 216 64.4
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 9.2e-82 307.4 216 64.4
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 3.5e-81 305.4 224 64.7
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 7.8e-81 304.3 216 65.3
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.9e-80 302.0 211 68.2
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 5.0e-80 301.6 213 67.1
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.5e-79 300.1 217 62.7
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 3.3e-79 298.9 216 64.4
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 2.8e-78 295.8 216 62.5
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.1e-77 292.4 215 62.3
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.0e-76 289.7 215 62.3
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 3.4e-76 288.9 203 66.0
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.4e-76 288.5 220 63.6
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.7e-75 285.4 181 75.1
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.2e-74 280.8 216 60.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 4.6e-73 278.5 219 62.1
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 3.9e-72 275.4 170 80.0
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-70 270.0 218 57.3
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 8.1e-70 267.7 165 77.0
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.1e-69 267.3 225 53.8
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.6e-68 262.7 220 57.7
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.4e-68 262.3 166 74.7
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.4e-68 262.3 166 74.7
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 7.5e-68 261.2 219 53.4
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.2e-67 259.6 167 73.7
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 4.9e-67 258.5 219 51.1
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.4e-66 256.1 171 72.5
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.6e-65 253.4 225 60.0
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 8.6e-64 247.7 187 65.8
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-62 243.0 216 54.6
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.0e-61 238.8 190 58.4
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 7.6e-60 234.6 213 51.6
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.6e-60 234.6 186 58.6
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.9e-60 234.2 222 53.2
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.1e-58 230.7 141 76.6
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.9e-58 229.9 215 47.0
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.3e-56 223.8 136 78.7
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-56 223.0 211 51.2
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.5e-55 220.3 167 62.9
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.1e-54 216.5 170 59.4
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 8.1e-54 214.5 143 72.0
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 4.0e-53 212.2 212 49.1
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 3.4e-52 209.1 218 45.0
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 9.9e-52 207.6 154 62.3
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.1e-49 199.9 151 63.6
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 2.7e-49 199.5 212 45.8
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 7.8e-49 198.0 192 49.0
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 2.3e-48 196.4 163 55.8
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 3.0e-48 196.1 127 74.8
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 5.1e-48 195.3 219 41.1
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.6e-47 191.0 204 47.5
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-46 189.1 144 60.4
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.0e-44 183.3 145 59.3
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-44 183.0 163 53.4
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.2e-42 176.0 131 62.6
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 3.0e-40 169.5 128 67.2
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 4.8e-38 162.2 166 48.8
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 3.1e-37 159.5 123 61.0
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-36 156.8 133 56.4
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-36 155.2 135 53.3
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-34 151.0 114 61.4
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-29 134.4 101 61.4
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 6.3e-22 108.6 82 68.3
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 3.1e-21 106.3 81 63.0
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 9.0e-21 104.8 91 57.1
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-20 104.4 144 42.4
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-20 104.4 81 55.6
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 5.9e-20 102.1 52 80.8
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 4.6e-17 92.4 67 61.2
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 5.1e-16 89.0 52 69.2
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.8e-14 82.4 70 55.7
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.9e-11 73.2 64 53.1
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 6.5e-11 72.0 55 69.1
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 6.5e-11 72.0 55 69.1
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.1e-10 71.2 54 70.4
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.4e-10 70.9 103 40.8
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 3.2e-10 69.7 162 28.4


User provided reference genes

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