Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.8e-224 781.6 378 100.0
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 2.1e-195 685.6 373 86.3
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 4.7e-195 684.5 368 88.9
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 2.3e-194 682.2 368 88.0
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 1.1e-193 679.9 368 87.5
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 2.2e-192 675.6 368 86.7
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 6.3e-192 674.1 368 85.6
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 3.1e-191 671.8 368 85.1
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 4.1e-191 671.4 363 87.3
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 9.1e-191 670.2 358 86.9
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 2.0e-190 669.1 363 86.8
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 3.5e-190 668.3 368 85.6
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 5.9e-190 667.5 370 86.5
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 7.7e-190 667.2 368 85.3
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 3.8e-189 664.8 361 86.1
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 5.0e-189 664.5 368 85.9
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 8.5e-189 663.7 361 85.9
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 1.5e-188 662.9 368 86.4
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.5e-188 662.9 360 87.5
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 1.9e-188 662.5 361 85.6
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 1.6e-187 659.4 368 83.4
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 1.6e-187 659.4 361 85.9
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 5.2e-186 654.4 368 85.1
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 1.1e-185 653.3 361 84.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 1.5e-185 652.9 361 85.0
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 2.6e-185 652.1 368 83.2
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 2.6e-185 652.1 361 84.8
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 2.6e-185 652.1 361 84.2
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 3.3e-185 651.7 361 84.8
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 4.4e-185 651.4 363 84.6
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 7.5e-185 650.6 392 79.3
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 1.3e-184 649.8 363 83.2
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 2.8e-184 648.7 368 83.2
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 3.7e-184 648.3 358 85.2
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 2.4e-183 645.6 368 82.9
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 2.4e-183 645.6 361 83.4
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 7.0e-183 644.0 370 81.9
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 9.1e-183 643.7 363 83.7
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 1.2e-182 643.3 368 81.5
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 1.2e-182 643.3 355 85.6
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 2.7e-182 642.1 361 84.5
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 4.5e-182 641.3 368 81.5
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 7.7e-182 640.6 359 83.3
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 1.0e-181 640.2 382 80.6
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 6.5e-181 637.5 361 82.0
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 1.1e-180 636.7 428 73.4
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 3.2e-180 635.2 369 80.5
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 4.2e-180 634.8 370 82.2
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 5.5e-180 634.4 363 80.4
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 1.2e-179 633.3 361 82.0
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 2.1e-179 632.5 368 79.9
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 3.6e-179 631.7 363 79.9
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 3.6e-179 631.7 363 79.9
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 1.4e-178 629.8 363 79.6
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 1.8e-178 629.4 360 82.5
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 5.2e-178 627.9 367 81.7
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 2.6e-177 625.5 363 79.3
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 3.4e-177 625.2 370 80.8
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 5.7e-177 624.4 353 82.4
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 2.8e-176 622.1 361 81.4
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 4.8e-176 621.3 440 71.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 1.8e-175 619.4 363 80.4
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 3.1e-175 618.6 368 80.2
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.1e-175 618.6 425 73.6
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 4.1e-175 618.2 363 79.9
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 5.4e-175 617.8 362 79.8
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.7e-174 615.5 371 77.9
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 3.5e-174 615.1 371 78.7
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 3.5e-174 615.1 379 78.9
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 1.0e-173 613.6 368 78.5
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 6.5e-173 610.9 370 78.4
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 8.5e-173 610.5 379 78.4
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.2e-172 608.6 362 80.1
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 5.5e-172 607.8 379 77.6
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 2.1e-171 605.9 394 75.1
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 2.7e-171 605.5 361 79.8
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 2.7e-171 605.5 364 79.4
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 3.6e-171 605.1 368 76.6
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 3.6e-171 605.1 362 79.8
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 1.4e-170 603.2 364 78.8
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 1.8e-170 602.8 362 79.8
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 2.3e-170 602.4 361 78.9
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 2.3e-170 602.4 361 78.9
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 1.3e-168 596.7 365 78.1
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 1.3e-168 596.7 362 78.7
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 3.7e-168 595.1 362 78.7
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 6.3e-168 594.3 362 78.5
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 6.3e-168 594.3 362 78.7
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 6.3e-168 594.3 361 78.1
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 1.1e-167 593.6 362 78.7
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 1.1e-167 593.6 362 78.7
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 3.1e-167 592.0 363 78.5
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 4.1e-167 591.7 363 78.2
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 9.2e-167 590.5 362 78.5
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 1.6e-166 589.7 320 87.2
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 4.5e-166 588.2 426 70.0
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 1.7e-165 586.3 359 78.3
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 8.6e-165 583.9 362 77.3
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 3.0e-157 558.9 488 60.9
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 1.9e-156 556.2 369 69.9
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 3.3e-156 555.4 366 71.3
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 1.3e-149 533.5 312 80.1
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 1.3e-149 533.5 358 68.7
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 5.2e-146 521.5 327 77.4
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 3.2e-143 512.3 371 63.6
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 3.0e-141 505.8 374 64.2
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.1e-140 503.8 367 65.4
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 3.0e-133 479.2 310 69.4
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 3.8e-128 462.2 362 65.7
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 5.1e-125 451.8 388 61.3
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.7e-110 402.9 261 72.4
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 9.3e-103 377.9 208 86.1
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 7.2e-95 351.7 232 72.8
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 6.3e-91 338.6 187 81.3
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 4.5e-89 332.4 179 87.7
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 1.0e-85 321.2 179 82.7
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.4e-82 310.8 371 47.4
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 9.1e-82 308.1 175 84.6
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 1.0e-77 294.7 379 47.8
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.5e-76 290.8 166 81.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.1e-74 284.6 216 68.1
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 5.9e-73 278.9 177 76.8
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 1.5e-71 274.2 155 78.1
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 3.2e-71 273.1 152 82.9
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 4.2e-71 272.7 150 82.7
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.1e-66 258.1 376 39.4
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 1.3e-59 234.6 354 38.4
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 9.5e-55 218.4 120 82.5
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 2.1e-54 217.2 346 41.0
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 1.8e-53 214.2 352 38.9
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 9.2e-50 201.8 102 92.2
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 4.7e-38 162.9 159 54.1
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 5.8e-28 129.4 107 63.6
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.7e-27 127.9 102 63.7
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 2.4e-26 124.0 56 94.6
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 6.0e-25 119.4 355 29.0
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 6.0e-25 119.4 112 58.0
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.1e-23 115.2 65 76.9
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 2.1e-22 110.9 67 76.1
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.3e-16 91.7 116 46.6
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 4.3e-15 86.7 53 81.1
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 4.3e-15 86.7 53 81.1
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 8.1e-14 82.4 54 63.0
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 3.2e-10 70.5 34 91.2
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 7.1e-10 69.3 54 64.8
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 1.3e-06 58.5 53 56.6


User provided reference genes

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