Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 5.9e-269 930.2 459 100.0
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 2.4e-225 785.4 459 83.7
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 2.8e-218 761.9 459 80.0
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 2.0e-216 755.7 459 80.2
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.6e-216 755.4 459 80.4
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 3.4e-216 755.0 459 80.2
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 4.5e-216 754.6 459 81.0
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 4.9e-215 751.1 459 80.2
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.9e-215 751.1 459 80.0
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 2.4e-214 748.8 459 80.0
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 7.1e-214 747.3 459 79.5
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 7.9e-213 743.8 459 80.4
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 1.0e-212 743.4 459 78.4
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.3e-212 743.0 459 78.9
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 1.5e-211 739.6 438 81.5
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 1.1e-209 733.4 459 78.0
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 9.0e-209 730.3 459 78.0
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 3.8e-207 724.9 459 76.3
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 8.4e-207 723.8 459 77.1
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 1.1e-206 723.4 494 73.5
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 1.4e-206 723.0 459 78.4
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 9.3e-206 720.3 439 80.2
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 1.6e-205 719.5 459 76.3
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.6e-205 719.5 459 76.7
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 2.1e-205 719.2 439 78.4
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.7e-205 718.8 459 76.3
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 6.7e-204 714.1 460 75.9
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 1.5e-203 713.0 459 76.9
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 4.8e-202 708.0 459 76.3
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 1.8e-201 706.1 459 75.2
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 1.8e-201 706.1 459 74.7
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 4.0e-201 704.9 459 76.0
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 9.0e-201 703.7 438 78.8
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 3.4e-200 701.8 460 73.7
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 7.6e-200 700.7 465 75.3
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 8.4e-199 697.2 462 74.0
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 2.5e-198 695.7 442 76.7
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 2.7e-197 692.2 459 73.9
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 2.3e-196 689.1 458 72.5
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 2.3e-196 689.1 459 73.9
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 3.0e-196 688.7 418 80.6
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 6.7e-196 687.6 459 74.3
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 8.7e-196 687.2 459 72.3
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 1.1e-195 686.8 460 73.0
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 1.5e-195 686.4 459 74.7
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 5.7e-195 684.5 460 72.8
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 7.4e-195 684.1 455 72.1
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 9.6e-195 683.7 459 72.8
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 8.2e-194 680.6 459 73.6
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 1.4e-193 679.9 410 82.4
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 1.8e-193 679.5 459 73.4
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 4.1e-193 678.3 415 79.3
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 5.3e-193 677.9 462 72.7
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 5.3e-193 677.9 459 73.2
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 1.5e-192 676.4 459 72.3
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 3.4e-192 675.2 459 72.3
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 5.9e-192 674.5 462 72.3
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.7e-191 672.9 439 75.2
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 1.4e-190 669.8 458 72.3
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 1.9e-190 669.5 459 70.6
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 9.3e-190 667.2 457 71.6
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 1.2e-189 666.8 518 64.9
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 2.1e-189 666.0 462 71.6
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 2.7e-189 665.6 463 72.1
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 3.6e-189 665.2 459 71.7
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 7.9e-189 664.1 459 69.9
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 1.0e-188 663.7 458 70.7
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 6.7e-188 661.0 458 71.2
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 1.9e-187 659.4 411 77.1
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 4.3e-187 658.3 460 70.4
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 5.7e-187 657.9 461 70.7
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 4.8e-186 654.8 459 70.6
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 1.8e-185 652.9 460 69.6
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 1.7e-183 646.4 461 69.2
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.0e-180 637.1 385 81.3
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 1.3e-178 630.2 440 72.5
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 8.2e-178 627.5 465 66.2
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 5.3e-177 624.8 459 66.4
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 4.5e-176 621.7 385 80.0
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 6.5e-175 617.8 462 67.7
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 8.5e-175 617.5 459 68.0
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 2.5e-174 615.9 459 65.4
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 3.2e-174 615.5 459 67.3
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 2.7e-173 612.5 460 67.6
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 2.7e-173 612.5 459 65.1
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 7.4e-171 604.4 490 64.7
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 9.7e-171 604.0 460 66.3
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 3.7e-170 602.1 460 66.5
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 4.8e-170 601.7 460 66.3
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 4.8e-170 601.7 460 66.5
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 1.8e-169 599.7 465 66.7
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 2.7e-165 585.9 410 70.0
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 2.0e-163 579.7 461 62.5
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 5.7e-163 578.2 459 65.4
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.2e-160 570.5 459 63.8
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.4e-156 557.0 372 73.9
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 2.0e-136 490.0 373 66.2
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 2.0e-131 473.4 472 50.4
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 1.6e-128 463.8 461 49.9
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 3.4e-123 446.0 455 49.7
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 4.9e-122 442.2 308 69.8
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 8.3e-122 441.4 464 54.1
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.2e-117 427.6 344 64.0
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.2e-117 427.6 459 47.5
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 7.1e-105 385.2 319 63.0
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.6e-101 374.0 382 51.6
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 2.4e-100 370.2 514 41.2
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 5.3e-92 342.4 470 40.9
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 9.3e-81 305.1 246 67.5
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 7.9e-80 302.0 207 67.6
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 6.1e-72 275.8 225 57.8
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 3.9e-71 273.1 439 36.4
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.0e-66 258.5 183 67.2
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.4e-39 168.3 287 35.2
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.8e-39 167.9 107 73.8
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 4.4e-38 163.3 453 27.2
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.4e-20 105.1 124 39.5
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 8.6e-10 69.3 329 22.5
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 6.2e-08 63.2 180 29.4
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.4e-07 62.0 126 27.0
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 1.4e-07 62.0 412 20.9
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.8e-07 61.6 126 26.2
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 5.2e-07 60.1 126 26.2
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 6.8e-07 59.7 126 27.0
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 8.9e-07 59.3 160 26.2
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 1.2e-06 58.9 132 27.3
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 1.2e-06 58.9 132 27.3
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.2e-06 58.9 171 25.7
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.2e-06 58.9 414 22.0
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.2e-06 58.9 134 27.6
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 2.0e-06 58.2 242 25.6
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 2.0e-06 58.2 214 24.8
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 2.6e-06 57.8 138 28.3
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 2.6e-06 57.8 160 26.2
HanXRQChr17g0551711 Helianthus annuus HOM05D005508 ORTHO05D006882 3.4e-06 57.4 130 30.0
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 3.4e-06 57.4 118 27.1
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 4.4e-06 57.0 126 25.4
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 4.4e-06 57.0 146 28.1
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 7.5e-06 56.2 115 27.0
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 7.5e-06 56.2 121 26.4


User provided reference genes

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