Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 6.3e-299 1030.0 523 100.0
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.2e-291 1005.0 523 97.7
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.5e-289 998.8 553 92.9
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.5e-280 966.5 503 97.8
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 2.8e-267 924.9 516 91.9
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 1.5e-252 875.9 496 88.1
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 2.7e-233 812.0 497 81.5
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 1.0e-232 810.1 502 80.5
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 1.2e-230 803.1 502 80.1
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 2.8e-230 802.0 496 81.2
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.4e-229 799.7 496 80.4
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 8.9e-229 797.0 499 80.2
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 2.9e-227 792.0 508 78.1
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.9e-226 789.3 496 79.4
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 5.4e-226 787.7 499 77.8
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 2.7e-225 785.4 496 80.0
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 3.5e-225 785.0 493 79.3
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 1.0e-224 783.5 492 78.7
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 3.0e-224 781.9 499 78.0
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 2.5e-223 778.9 497 78.9
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 6.8e-221 770.8 491 77.8
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 5.8e-220 767.7 391 99.2
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 9.9e-220 766.9 499 75.8
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 1.7e-219 766.1 494 76.5
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 2.2e-219 765.8 506 74.3
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 4.9e-219 764.6 497 75.9
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 6.4e-219 764.2 482 79.5
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 2.4e-218 762.3 509 75.8
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 3.2e-218 761.9 507 73.6
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 7.1e-218 760.8 497 75.9
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 9.2e-218 760.4 491 77.0
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 1.6e-217 759.6 494 75.7
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 1.6e-217 759.6 490 76.1
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.7e-217 758.8 490 77.3
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 2.7e-217 758.8 590 70.7
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 6.0e-217 757.7 504 74.2
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 7.8e-217 757.3 509 75.4
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 2.3e-216 755.7 489 75.7
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 2.3e-216 755.7 495 76.8
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 3.9e-216 755.0 494 76.5
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 6.6e-216 754.2 493 76.1
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 8.6e-216 753.8 507 75.5
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 1.1e-215 753.4 499 74.7
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.9e-215 752.7 496 76.0
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.9e-215 752.7 519 74.4
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 4.3e-215 751.5 497 75.5
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 4.3e-215 751.5 510 75.7
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 1.2e-214 750.0 498 74.7
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 1.2e-214 750.0 491 76.8
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 1.6e-214 749.6 502 74.1
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 2.1e-214 749.2 490 76.3
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 2.8e-214 748.8 495 74.9
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.6e-214 748.4 491 76.0
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 4.7e-214 748.0 482 77.2
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 8.1e-214 747.3 493 76.5
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 8.1e-214 747.3 499 75.4
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 1.1e-213 746.9 500 76.2
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.8e-213 746.1 490 76.1
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 9.0e-213 743.8 518 74.3
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 3.4e-212 741.9 494 74.9
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.4e-212 741.5 487 78.2
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 4.4e-212 741.5 498 74.3
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 5.8e-212 741.1 494 75.9
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.3e-211 740.0 499 75.4
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 4.9e-211 738.0 497 73.4
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 5.4e-210 734.6 489 74.2
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 8.7e-208 727.2 524 70.6
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 1.5e-207 726.5 499 73.9
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 1.9e-207 726.1 503 71.6
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 5.6e-207 724.5 492 73.4
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 7.3e-207 724.2 501 72.9
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 1.6e-206 723.0 497 72.8
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.1e-205 720.3 482 74.7
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.4e-205 719.9 500 73.2
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 5.8e-204 714.5 495 72.5
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 2.9e-203 712.2 512 70.9
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 1.4e-202 709.9 516 70.3
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 5.4e-202 708.0 494 72.7
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 2.7e-201 705.7 512 70.7
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 2.7e-201 705.7 500 72.2
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 3.5e-201 705.3 492 73.0
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 6.0e-201 704.5 492 72.6
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 1.0e-200 703.7 492 72.8
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 2.3e-200 702.6 492 72.8
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 3.0e-200 702.2 495 72.1
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 5.1e-200 701.4 486 71.6
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 2.5e-199 699.1 479 73.5
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 4.3e-199 698.4 495 71.9
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 1.6e-198 696.4 492 72.2
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 2.4e-197 692.6 491 72.1
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 4.0e-197 691.8 492 71.7
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 5.3e-197 691.4 494 69.4
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 1.2e-196 690.3 515 68.9
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 2.6e-196 689.1 436 78.4
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 3.1e-189 665.6 493 69.0
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 8.7e-184 647.5 498 66.3
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.1e-183 647.1 518 64.3
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 9.0e-181 637.5 625 56.3
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.7e-174 616.7 474 66.0
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 6.5e-171 604.7 468 66.9
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.8e-165 586.6 497 59.6
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 1.1e-159 567.4 492 59.8
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 2.6e-156 556.2 490 58.8
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 1.6e-153 547.0 488 59.4
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 5.0e-147 525.4 325 80.9
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.8e-137 493.0 360 72.5
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 3.4e-127 459.5 410 57.8
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 2.2e-110 403.7 265 73.6
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 3.5e-108 396.4 557 44.2
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 1.1e-106 391.3 259 73.4
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.6e-89 334.3 280 64.3
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 8.1e-81 305.4 370 48.9
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.2e-76 291.6 460 42.2
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 6.7e-75 285.8 177 79.7
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.3e-70 271.6 189 70.4
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 6.7e-59 232.6 142 76.1
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 2.0e-58 231.1 149 77.9
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 4.3e-58 229.9 153 73.2
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 6.5e-54 216.1 233 50.6
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 6.7e-51 206.1 160 71.9
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 3.5e-47 193.7 125 77.6
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 3.6e-44 183.7 123 71.5
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 2.0e-42 177.9 148 61.5
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.4e-42 176.0 156 59.6
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.2e-38 164.5 297 38.7
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.8e-38 163.7 173 53.8
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-37 162.2 137 65.0
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-37 162.2 137 65.0
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 2.6e-34 151.0 217 43.3
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 8.3e-33 146.0 97 73.2
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 5.3e-32 143.3 123 65.9
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 4.0e-27 127.1 122 57.4
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 2.3e-19 101.3 62 75.8
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.0e-19 100.9 81 67.9
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 4.1e-16 90.5 138 39.9
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 5.4e-16 90.1 198 33.3
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.9e-13 81.6 50 80.0
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 4.3e-13 80.5 85 52.9
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 8.0e-12 76.3 85 52.9
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 5.4e-08 63.5 76 44.7
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 6.0e-07 60.1 87 36.8
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 1.0e-06 59.3 87 36.8
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 1.0e-06 59.3 89 38.2
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 3.9e-06 57.4 99 32.3
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 5.0e-06 57.0 129 30.2
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 6.6e-06 56.6 109 31.2
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 8.6e-06 56.2 118 30.5
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 8.6e-06 56.2 118 29.7


User provided reference genes

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