Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.7e-264 915.6 524 100.0
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.0e-261 904.8 435 98.9
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.4e-260 901.0 435 98.6
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.9e-255 885.6 435 96.8
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.2e-251 872.1 425 98.1
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 1.7e-232 809.3 436 89.4
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.8e-227 791.6 486 96.5
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 3.8e-219 765.0 429 86.0
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 4.2e-218 761.5 427 85.5
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 5.1e-216 754.6 434 84.3
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.1e-215 753.4 446 83.2
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 3.3e-215 751.9 437 84.0
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 5.6e-215 751.1 434 84.1
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 4.8e-214 748.0 426 83.8
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 6.2e-214 747.7 434 82.0
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 8.1e-214 747.3 427 84.1
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 1.8e-213 746.1 432 82.9
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.8e-213 746.1 434 82.7
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 2.4e-213 745.7 443 81.9
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 3.1e-213 745.3 434 82.0
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 3.1e-213 745.3 428 83.2
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 4.0e-213 745.0 433 83.1
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 9.0e-213 743.8 427 85.2
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.2e-212 743.4 433 83.1
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.5e-212 743.0 436 81.7
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 2.6e-212 742.3 424 83.7
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 3.4e-212 741.9 425 82.6
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 4.5e-212 741.5 423 84.2
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 9.9e-212 740.3 438 81.5
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 9.9e-212 740.3 438 81.5
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 9.9e-212 740.3 435 82.1
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.7e-211 739.6 437 82.2
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.7e-211 739.6 427 84.5
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 2.9e-211 738.8 428 84.3
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 2.9e-211 738.8 434 82.3
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 4.9e-211 738.0 429 82.3
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.4e-210 736.5 425 82.8
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 5.4e-210 734.6 434 81.6
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 2.1e-209 732.6 423 83.2
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 3.5e-209 731.9 436 82.6
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 6.0e-209 731.1 423 83.2
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.0e-208 730.3 428 82.2
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 3.0e-208 728.8 424 82.8
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 5.1e-208 728.0 443 81.9
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.1e-207 726.9 440 81.6
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 3.3e-207 725.3 424 83.0
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 3.3e-207 725.3 437 82.2
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 5.6e-207 724.5 443 80.8
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 9.6e-207 723.8 430 81.4
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.8e-206 722.2 440 80.2
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 8.1e-206 720.7 433 80.4
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.2e-204 716.8 434 81.8
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.2e-204 716.8 430 80.2
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 2.6e-204 715.7 466 76.4
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 3.4e-204 715.3 424 80.4
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 7.1e-202 707.6 397 86.1
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.3e-200 703.4 421 81.5
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 5.1e-200 701.4 435 78.2
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 6.7e-200 701.0 423 79.4
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 3.3e-199 698.7 426 79.6
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 3.3e-199 698.7 427 81.5
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 1.3e-198 696.8 432 79.9
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 2.1e-198 696.0 432 79.9
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 2.8e-198 695.7 407 83.3
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.6e-196 689.1 428 77.8
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.7e-195 686.4 426 78.2
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 8.4e-195 684.1 420 79.3
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.9e-194 682.9 477 71.1
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 9.3e-194 680.6 464 73.7
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 3.0e-192 675.6 429 76.0
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 2.5e-191 672.5 426 74.4
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 2.1e-190 669.5 393 81.4
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.4e-189 666.8 435 73.1
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 5.3e-189 664.8 425 74.6
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 6.9e-189 664.5 436 72.7
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 3.4e-188 662.1 455 73.2
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.9e-187 659.1 349 88.5
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.5e-186 656.0 440 73.9
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 3.2e-186 655.6 427 73.8
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 4.2e-186 655.2 424 74.1
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 2.1e-185 652.9 426 75.6
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 6.1e-185 651.4 422 74.4
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 7.9e-185 651.0 438 71.9
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 5.1e-184 648.3 425 73.2
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 4.3e-183 645.2 437 71.9
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 2.8e-182 642.5 437 71.6
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 3.7e-182 642.1 427 73.1
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 6.3e-182 641.3 431 71.7
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 6.9e-181 637.9 427 72.1
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.2e-180 637.1 438 70.5
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.3e-179 633.6 435 71.5
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 3.8e-179 632.1 433 70.7
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 2.7e-177 625.9 427 71.2
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.3e-176 622.9 430 71.9
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 3.3e-175 619.0 378 78.6
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 8.2e-174 614.4 401 73.3
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.1e-173 612.5 424 69.8
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 3.1e-173 612.5 403 74.9
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 5.9e-172 608.2 435 68.0
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 7.2e-170 601.3 430 70.2
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 2.6e-167 592.8 380 77.1
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 8.2e-166 587.8 399 73.2
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.1e-165 585.5 429 68.1
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.6e-164 583.6 394 74.1
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 3.5e-164 582.4 456 66.7
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 3.6e-161 572.4 315 85.4
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 6.3e-158 561.6 305 83.9
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 3.5e-156 555.8 348 77.9
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 5.4e-149 531.9 328 80.2
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 3.6e-137 492.7 342 70.8
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 3.4e-135 486.1 293 78.8
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.1e-130 471.1 312 75.6
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 2.0e-127 460.3 422 56.6
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 4.9e-126 455.7 443 56.9
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 3.4e-119 433.0 450 51.1
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 9.9e-119 431.4 354 59.3
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 1.7e-118 430.6 331 65.6
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 8.1e-113 411.8 330 62.4
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 9.2e-109 398.3 218 81.7
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 1.6e-108 397.5 324 55.9
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 1.1e-101 374.8 191 90.1
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 6.7e-91 339.0 433 45.7
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 3.1e-88 330.1 259 65.6
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 4.0e-88 329.7 231 71.4
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 6.1e-60 236.1 265 54.0
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 5.5e-53 213.0 200 61.0
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 2.3e-51 207.6 114 85.1
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 5.3e-48 196.4 136 73.5
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 5.2e-43 179.9 172 61.6
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.5e-34 151.8 316 33.2
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 2.0e-34 151.4 109 73.4
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 2.3e-30 137.9 77 81.8
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 2.9e-30 137.5 79 83.5
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 6.8e-27 126.3 269 32.3
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 5.6e-21 106.7 324 28.4
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.8e-19 101.7 80 62.5
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 9.2e-16 89.4 52 75.0
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 1.1e-08 65.9 54 57.4
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.1e-08 65.9 28 92.9
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.9e-08 65.1 92 51.1
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 2.7e-07 61.2 28 92.9


User provided reference genes

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