Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 2.8e-263 911.4 449 100.0
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.0e-262 907.5 449 99.3
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 6.4e-260 900.2 449 98.2
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.6e-258 895.6 449 98.2
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 7.8e-258 893.3 449 97.1
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 3.5e-250 867.8 449 94.0
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 1.6e-231 805.8 450 86.4
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 2.7e-226 788.5 451 86.3
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 2.8e-215 751.9 459 80.2
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 4.1e-214 748.0 451 80.5
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 2.0e-213 745.7 451 80.9
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 4.5e-213 744.6 454 78.0
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 2.9e-212 741.9 459 78.6
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 8.5e-212 740.3 436 81.2
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 1.1e-211 740.0 451 79.4
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 7.2e-211 737.3 459 77.8
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 9.4e-211 736.9 450 80.7
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 1.0e-209 733.4 451 78.3
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.0e-209 733.4 454 78.2
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 1.8e-209 732.6 486 74.7
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 3.0e-209 731.9 459 76.7
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 8.8e-209 730.3 451 79.4
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.1e-208 729.9 451 78.3
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 5.7e-208 727.6 451 77.8
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 2.8e-207 725.3 453 77.3
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 4.1e-206 721.5 436 78.9
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 1.4e-201 706.4 450 75.8
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 4.0e-201 704.9 450 76.4
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 4.0e-201 704.9 455 74.5
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 5.2e-201 704.5 458 74.9
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 5.2e-201 704.5 459 76.5
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 9.7e-200 700.3 438 77.2
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 1.3e-199 699.9 447 75.2
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.7e-199 699.5 454 74.2
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 5.3e-198 694.5 460 74.1
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 7.0e-198 694.1 456 75.0
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 1.6e-197 693.0 458 74.9
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 2.7e-197 692.2 451 75.6
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 6.5e-196 687.6 457 72.2
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 6.5e-196 687.6 401 83.5
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 6.5e-196 687.6 450 74.7
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 8.5e-196 687.2 454 72.9
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 8.5e-196 687.2 454 72.9
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.9e-195 686.0 456 73.9
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 1.9e-195 686.0 450 74.0
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 2.5e-195 685.6 454 72.7
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 4.2e-195 684.9 454 74.2
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 4.2e-195 684.9 458 73.1
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 9.4e-195 683.7 441 76.2
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 9.4e-195 683.7 435 74.5
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 1.2e-194 683.3 436 76.1
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 3.6e-194 681.8 458 72.5
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 4.7e-194 681.4 451 73.8
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 6.1e-194 681.0 453 74.0
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 1.0e-193 680.2 449 73.9
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 1.8e-193 679.5 451 73.2
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 8.8e-193 677.2 450 73.6
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 1.5e-192 676.4 449 73.9
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 1.5e-192 676.4 413 78.9
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 9.8e-192 673.7 451 72.3
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 1.3e-191 673.3 450 73.8
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 2.8e-191 672.2 458 71.8
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 8.3e-191 670.6 457 71.3
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 2.4e-190 669.1 418 76.6
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 5.4e-190 667.9 452 71.7
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 1.2e-189 666.8 452 72.8
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 3.5e-189 665.2 453 72.2
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 2.3e-188 662.5 460 70.9
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 1.5e-187 659.8 456 71.5
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 1.5e-187 659.8 515 65.0
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 3.3e-187 658.7 456 70.8
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 2.1e-186 656.0 459 71.2
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 1.0e-185 653.7 455 71.2
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.4e-182 643.3 454 70.0
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 9.2e-182 640.6 455 69.9
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 1.7e-180 636.3 453 70.2
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 1.7e-180 636.3 435 73.1
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 2.9e-180 635.6 456 70.0
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 5.0e-180 634.8 456 67.3
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 6.6e-180 634.4 411 74.7
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 2.6e-176 622.5 453 68.4
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 3.4e-176 622.1 383 79.4
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 4.4e-176 621.7 456 69.5
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 5.8e-176 621.3 457 68.7
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 3.7e-175 618.6 453 67.5
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 1.4e-174 616.7 455 67.3
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 2.4e-174 615.9 457 68.1
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 5.4e-174 614.8 488 65.2
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 5.4e-174 614.8 385 77.9
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 2.7e-173 612.5 459 66.9
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 1.0e-172 610.5 458 65.1
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 4.0e-169 598.6 450 66.9
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 8.3e-167 590.9 440 67.0
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.6e-165 586.6 452 66.2
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 3.6e-162 575.5 459 63.0
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.5e-155 553.5 372 73.9
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 1.6e-149 533.5 371 73.6
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 2.2e-135 486.5 458 52.6
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 8.4e-135 484.6 443 54.6
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 9.3e-126 454.5 460 56.5
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 2.1e-125 453.4 338 68.9
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 3.0e-124 449.5 459 48.8
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 3.9e-124 449.1 299 73.6
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 3.4e-120 436.0 455 48.8
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 5.9e-112 408.7 312 67.3
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 2.2e-103 380.2 514 41.2
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.4e-102 377.5 386 52.1
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.1e-91 341.3 462 42.0
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 2.2e-87 327.0 247 72.5
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 3.5e-80 303.1 207 67.1
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 7.5e-75 285.4 224 61.2
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 3.6e-69 266.5 441 37.2
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.1e-65 255.0 191 65.4
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.6e-40 171.4 107 74.8
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 1.3e-39 168.3 435 28.5
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 6.6e-39 166.0 309 34.6
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 6.9e-20 102.8 121 39.7
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 1.1e-09 68.9 335 24.5
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.9e-09 68.2 341 23.2
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 7.1e-09 66.2 334 22.5
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.2e-08 65.5 336 23.5
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.0e-07 62.4 338 20.4
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 1.3e-07 62.0 181 25.4
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 3.9e-07 60.5 128 26.6
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 3.9e-07 60.5 128 26.6
SalBow7G0942 Salvia bowleyana HOM05D001610 ORTHO05D001585 5.1e-07 60.1 253 26.9
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 6.7e-07 59.7 142 25.4
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 6.7e-07 59.7 142 25.4
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 8.7e-07 59.3 214 24.8
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 8.7e-07 59.3 128 26.6
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 8.7e-07 59.3 251 21.5
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 1.5e-06 58.5 128 25.8
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.5e-06 58.5 171 25.1
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 1.5e-06 58.5 128 26.6
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 1.9e-06 58.2 128 25.8
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 1.9e-06 58.2 169 26.6
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.9e-06 58.2 142 28.9
CSS0037820 Camellia sinensis var. sinensis HOM05D000526 ORTHO05D000956 2.5e-06 57.8 319 21.9
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 3.3e-06 57.4 243 24.7
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 4.3e-06 57.0 118 27.1
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 5.7e-06 56.6 415 22.9
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 7.4e-06 56.2 338 22.8
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 9.6e-06 55.8 123 26.8
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 9.6e-06 55.8 128 25.0


User provided reference genes

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