Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1373.6 709 100.0
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1348.6 703 99.3
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1324.7 709 95.9
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1303.5 713 95.0
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1269.6 709 92.0
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1256.1 707 91.9
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1241.5 705 90.9
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1228.8 702 88.9
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1228.4 703 89.2
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1222.6 703 88.8
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1218.0 709 87.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1216.4 709 88.3
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1216.1 699 88.4
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1214.9 701 88.6
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1212.6 706 88.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1206.4 709 87.4
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1206.0 709 87.4
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1205.3 709 87.7
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1204.9 699 89.1
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1201.4 699 87.8
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1199.9 705 87.4
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1198.7 701 87.3
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1197.2 701 87.4
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1196.0 701 87.2
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1191.0 688 89.2
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1191.0 701 86.9
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1190.6 688 88.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1190.3 705 85.7
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1189.5 709 87.0
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1188.7 709 86.2
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1187.6 709 86.0
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1187.2 709 86.0
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1186.4 687 87.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1186.4 687 87.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1186.4 687 87.9
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 695 87.8
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 715 85.5
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 695 87.2
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1180.6 709 84.9
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1176.0 699 86.0
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1174.1 697 86.7
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1171.0 705 85.8
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 688 87.2
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1169.5 671 88.8
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1169.1 737 82.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 694 85.4
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 723 84.2
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 732 83.2
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1165.2 688 86.6
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 688 86.5
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 692 86.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 694 84.7
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 699 85.7
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 709 83.6
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 697 83.6
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 699 83.4
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 702 83.0
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 688 86.8
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1152.1 699 83.4
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1151.7 699 83.4
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1151.7 699 83.3
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1151.7 699 83.3
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 697 85.1
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1149.8 693 85.6
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 695 84.0
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 695 84.0
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 699 83.1
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 699 83.0
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 726 81.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 715 83.4
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 699 83.0
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1144.4 692 86.0
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 700 82.9
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 693 84.1
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 698 84.7
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 703 82.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 697 83.4
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1134.8 699 84.5
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1134.4 694 83.0
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 695 82.3
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1128.2 699 81.8
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 697 81.6
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 770 76.4
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 668 84.9
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 686 83.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 740 78.1
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 692 82.1
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1110.9 697 81.5
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 686 83.1
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 741 77.3
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1095.5 706 80.3
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1092.8 696 78.9
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1089.3 668 82.5
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1083.2 703 78.8
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 3.4e-311 1071.2 740 76.4
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.6e-308 1061.6 666 82.3
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 7.9e-305 1050.0 696 77.0
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 6.3e-302 1040.4 716 75.0
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 4.1e-301 1037.7 747 72.0
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.7e-287 990.7 631 82.3
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 8.2e-286 986.9 620 81.0
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 3.5e-284 981.5 591 83.9
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.1e-277 958.0 689 70.1
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.1e-277 958.0 689 70.1
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.5e-274 947.6 584 81.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.2e-271 939.9 695 67.3
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.0e-267 926.8 683 73.5
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.8e-264 916.0 694 67.1
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.8e-261 906.0 566 80.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 4.1e-261 904.8 586 79.4
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.0e-260 902.5 691 66.6
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 7.3e-258 894.0 554 82.1
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 5.2e-256 887.9 512 89.1
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 6.2e-249 864.4 675 70.1
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.1e-241 837.4 495 86.9
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.0e-223 779.6 681 58.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 2.3e-211 739.6 673 55.7
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.9e-206 722.6 441 81.9
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.4e-199 699.1 471 80.5
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.2e-155 552.4 328 81.7
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 5.9e-151 538.9 732 43.3
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.1e-140 503.8 756 38.0
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 6.4e-137 492.3 280 86.8
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.2e-131 472.6 273 86.1
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 5.6e-125 452.6 269 84.8
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.6e-116 423.3 359 60.7
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.5e-114 417.9 233 87.1
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.8e-114 416.0 237 87.8
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 9.9e-114 415.2 253 81.8
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 7.8e-111 405.6 744 35.1
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.8e-108 396.4 261 80.1
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 5.6e-101 372.9 251 79.7
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.3e-84 318.5 193 90.2
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.2e-81 307.8 182 79.7
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 5.7e-77 293.1 215 69.3
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.8e-73 280.4 148 90.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 4.2e-72 276.9 195 72.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 9.1e-67 259.2 192 77.6
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-60 238.4 155 65.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 4.5e-58 230.3 165 73.3
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 8.5e-57 226.1 170 68.2
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.8e-52 211.1 179 67.6
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.1e-51 209.1 489 29.7
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 2.7e-50 204.5 240 53.3
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.2e-45 189.1 114 86.8
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.5e-45 188.7 122 81.1
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 8.5e-41 172.9 104 82.7
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.5e-41 172.9 111 83.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.7e-37 160.2 111 72.1
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 3.4e-29 134.4 100 70.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.7e-28 132.1 100 68.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.7e-28 132.1 100 68.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 9.2e-27 126.3 81 77.8
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.3e-25 122.5 151 50.3
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 8.6e-25 119.8 72 86.1
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.0e-23 113.2 93 67.7
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 9.8e-21 106.3 69 72.5
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 6.4e-20 103.6 118 52.5
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 5.4e-19 100.5 63 77.8
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.2e-18 99.4 57 84.2
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.7e-18 98.2 93 57.0
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.0e-17 94.7 59 79.7
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 6.6e-17 93.6 77 64.9
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.5e-16 91.7 65 73.8
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 9.8e-13 79.7 61 68.9
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.7e-12 79.0 78 52.6
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.1e-11 76.3 46 78.3
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.2e-10 72.8 61 65.6
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 5.1e-09 67.4 40 85.0
FAN25G2786 Fragaria x ananassa HOM05D004330 ORTHO05D206697 1.1e-06 59.7 31 90.3


User provided reference genes

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