Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 5.6e-124 447.6 222 100.0
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.1e-110 402.5 222 91.0
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 5.7e-108 394.4 222 85.1
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 5.1e-101 371.3 218 81.2
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.6e-99 366.3 218 81.2
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.2e-97 360.1 218 76.1
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 5.9e-97 357.8 218 77.1
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.9e-96 355.5 222 74.8
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.8e-96 355.1 215 78.1
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.8e-96 355.1 215 78.1
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 5.0e-96 354.8 218 74.3
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 8.5e-96 354.0 222 73.9
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.9e-95 352.8 218 75.7
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.9e-95 352.8 218 75.7
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.5e-95 352.4 218 76.1
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 4.2e-95 351.7 218 76.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 5.5e-95 351.3 223 73.1
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.6e-94 349.7 222 73.4
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 2.7e-94 349.0 215 75.8
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.6e-94 348.6 215 74.9
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 3.6e-94 348.6 220 74.5
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 4.6e-94 348.2 220 75.5
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.0e-93 347.1 218 72.5
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 5.1e-93 344.7 218 71.6
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.5e-92 343.2 218 72.0
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.5e-92 343.2 223 72.2
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 3.3e-92 342.0 241 70.1
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 3.3e-92 342.0 219 74.4
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.3e-92 342.0 173 98.8
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 4.3e-92 341.7 223 72.2
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 9.7e-92 340.5 219 72.1
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 9.7e-92 340.5 255 66.3
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 9.7e-92 340.5 255 66.3
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.2e-91 339.3 218 72.0
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 3.7e-91 338.6 217 72.4
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 6.3e-91 337.8 219 71.7
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.1e-90 337.0 218 70.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.8e-90 336.3 215 72.6
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.4e-90 335.9 219 71.2
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.4e-90 335.9 219 71.2
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 3.1e-90 335.5 216 71.3
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 5.3e-90 334.7 219 68.5
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.3e-90 334.7 219 71.7
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.9e-90 334.3 218 69.3
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.2e-89 333.6 219 71.2
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.5e-89 333.2 219 71.2
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.6e-89 332.4 219 70.3
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.3e-88 330.1 193 88.6
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.3e-88 330.1 219 71.7
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.7e-88 329.7 219 70.3
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.2e-88 329.3 218 69.7
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 6.5e-88 327.8 219 69.4
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 5.5e-87 324.7 250 64.0
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 9.4e-87 323.9 218 67.4
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 2.7e-86 322.4 219 69.9
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 4.7e-86 321.6 219 68.0
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.9e-86 320.9 218 68.3
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.8e-85 319.7 218 65.6
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 2.3e-85 319.3 218 66.1
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 3.9e-85 318.5 219 66.7
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.1e-84 317.0 218 71.6
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.1e-84 317.0 220 68.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 4.4e-84 315.1 215 67.9
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 4.4e-84 315.1 215 67.9
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 5.7e-84 314.7 215 67.4
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 4.8e-83 311.6 217 65.4
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 6.3e-83 311.2 216 67.6
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 2.4e-82 309.3 217 65.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 2.4e-82 309.3 215 65.1
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 3.1e-82 308.9 236 62.7
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 4.1e-82 308.5 265 57.7
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 7.0e-82 307.8 197 71.1
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.2e-81 307.0 213 64.8
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.6e-81 305.8 219 63.0
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.7e-80 303.1 215 65.1
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 3.8e-80 302.0 247 60.3
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-80 301.2 219 60.3
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 8.5e-80 300.8 222 63.1
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 1.1e-79 300.4 210 66.7
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.5e-79 300.1 215 64.2
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 2.5e-79 299.3 222 60.8
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 3.2e-79 298.9 216 63.4
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 4.2e-79 298.5 222 62.6
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 7.2e-79 297.7 212 65.1
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.2e-78 297.0 210 67.6
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 2.7e-78 295.8 217 63.1
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.6e-78 295.4 215 62.3
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 3.6e-78 295.4 215 62.3
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.6e-78 295.4 215 62.3
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 6.1e-78 294.7 215 63.7
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 6.1e-78 294.7 217 60.8
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 8.0e-78 294.3 217 61.3
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.8e-77 293.1 217 61.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.3e-77 292.7 219 63.9
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 2.0e-76 289.7 216 60.2
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 9.7e-76 287.3 215 60.9
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 3.7e-75 285.4 222 60.4
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.8e-75 285.0 224 59.8
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.6e-73 280.0 224 58.5
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.2e-71 272.3 180 69.4
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 5.5e-71 271.6 211 58.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-70 269.6 215 57.7
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.7e-70 268.5 217 56.2
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 1.5e-68 263.5 218 59.6
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.0e-68 263.1 219 56.6
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 3.7e-67 258.8 218 51.4
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 4.8e-67 258.5 169 73.4
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.4e-66 256.9 165 73.3
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.4e-66 256.9 225 52.4
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.7e-64 250.0 219 51.6
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.5e-63 246.1 168 70.8
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.2e-63 245.7 163 71.2
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.2e-63 245.7 163 71.2
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.8e-61 240.0 184 58.2
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-60 235.7 215 52.6
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 5.7e-60 235.0 219 54.8
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-58 230.3 221 50.7
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-58 229.6 185 56.2
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 7.0e-58 228.0 213 46.9
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.3e-56 223.8 212 47.6
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.1e-55 220.7 141 72.3
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.1e-54 216.5 136 73.5
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 3.6e-54 215.7 211 49.8
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.1e-54 214.9 214 48.6
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 3.0e-53 212.6 169 60.4
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 5.2e-53 211.8 208 44.7
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.6e-52 209.5 142 69.0
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.8e-52 207.6 169 55.0
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.4e-50 203.8 159 59.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-49 200.3 171 55.0
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 7.8e-49 198.0 127 74.8
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 2.5e-47 193.0 211 44.1
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 2.1e-46 189.9 189 45.5
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 4.7e-46 188.7 146 61.0
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-45 185.7 143 58.7
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.8e-45 184.9 166 53.6
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.8e-44 181.8 203 45.3
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 6.4e-43 178.3 218 35.8
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 4.1e-42 175.6 173 53.2
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 3.5e-41 172.6 134 59.7
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 7.8e-41 171.4 126 69.8
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.0e-40 169.5 124 61.3
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.8e-37 160.2 120 61.7
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.2e-35 153.3 132 54.5
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.4e-35 151.8 134 51.5
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-34 150.2 117 59.0
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 6.2e-30 135.2 101 60.4
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 5.6e-23 112.1 76 65.8
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.1e-21 106.3 143 40.6
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.2e-20 104.4 89 56.2
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.2e-19 100.1 82 59.8
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 5.4e-18 95.5 76 52.6
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.6e-17 94.0 52 73.1
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.6e-17 92.4 70 62.9
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.3e-16 90.9 130 39.2
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 2.8e-14 83.2 52 65.4
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 6.9e-13 78.6 162 30.9
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.8e-11 72.8 64 51.6
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.4e-10 70.9 97 40.2
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 4.3e-07 59.3 44 68.2
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 4.3e-07 59.3 44 68.2
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 5.6e-07 58.9 43 69.8


User provided reference genes

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