Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 1.2e-266 922.5 454 100.0
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 9.1e-238 826.6 455 91.2
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.2e-237 826.2 455 90.8
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 2.1e-226 788.9 465 84.7
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 2.0e-160 569.7 455 64.4
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.8e-154 549.3 466 63.1
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.2e-151 539.7 497 59.4
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 3.6e-149 532.3 436 64.2
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 1.8e-129 466.8 495 50.7
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 4.1e-121 439.1 388 56.7
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 2.0e-120 436.8 482 49.6
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 1.4e-116 424.1 464 50.0
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.4e-116 424.1 471 49.3
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 3.0e-116 422.9 514 47.3
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 1.3e-114 417.5 437 50.6
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 1.8e-113 413.7 467 48.2
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.6e-112 410.6 473 47.1
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 6.6e-111 405.2 465 48.6
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 1.8e-108 397.1 475 46.5
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 3.0e-108 396.4 448 48.0
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 6.8e-108 395.2 448 47.8
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.5e-107 394.0 457 46.6
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.0e-107 393.7 473 46.9
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 2.6e-107 393.3 489 43.4
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 5.7e-107 392.1 358 53.9
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 7.5e-107 391.7 480 46.2
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 2.8e-106 389.8 479 47.0
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 6.6e-103 378.6 367 52.6
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.9e-102 377.1 467 46.0
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.5e-102 376.7 478 43.5
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 3.3e-102 376.3 376 52.4
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 8.0e-101 371.7 444 47.7
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 8.0e-101 371.7 471 45.2
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.0e-100 371.3 451 46.1
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 1.4e-100 370.9 461 44.7
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 3.0e-100 369.8 443 46.0
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 1.2e-99 367.9 381 50.9
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.5e-99 367.5 439 45.6
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 4.4e-99 365.9 495 43.2
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.5e-99 365.2 453 44.6
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 9.8e-99 364.8 498 40.8
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 1.7e-98 364.0 471 44.6
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 2.9e-98 363.2 483 43.9
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 4.1e-97 359.4 432 44.9
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 4.1e-97 359.4 428 46.7
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.4e-97 359.0 362 50.3
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 7.8e-96 355.1 443 45.4
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 7.8e-96 355.1 434 45.4
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 8.6e-95 351.7 448 44.6
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.1e-94 351.3 493 40.6
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.9e-94 350.5 436 43.3
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.5e-94 350.1 456 43.4
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.3e-94 349.7 432 45.6
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 3.3e-94 349.7 457 43.5
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 7.3e-94 348.6 365 49.3
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 4.7e-93 345.9 333 57.7
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.1e-92 344.7 505 40.8
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 8.9e-92 341.7 447 41.8
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.5e-91 340.9 457 42.2
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 5.8e-91 339.0 449 42.8
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 1.3e-90 337.8 457 42.0
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.3e-90 337.8 449 43.2
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 2.4e-89 333.6 375 48.0
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 2.4e-89 333.6 366 47.5
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 3.5e-88 329.7 378 45.2
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 4.6e-88 329.3 375 46.9
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 2.3e-87 327.0 368 49.5
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 3.0e-87 326.6 437 42.8
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 3.9e-87 326.2 361 49.9
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 8.6e-87 325.1 381 46.2
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 3.6e-85 319.7 437 40.0
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 8.9e-84 315.1 430 42.6
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 2.6e-83 313.5 303 51.5
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.6e-83 313.5 368 44.8
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.1e-80 303.9 369 45.3
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 3.5e-80 303.1 444 41.9
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 1.3e-79 301.2 514 37.0
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 3.0e-79 300.1 441 39.9
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.1e-78 298.1 431 41.3
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 7.3e-78 295.4 439 40.8
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 1.6e-77 294.3 287 53.3
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 4.7e-77 292.7 441 39.2
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 1.1e-76 291.6 437 39.8
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.4e-76 291.2 448 40.2
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.4e-76 290.4 446 40.1
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 2.4e-76 290.4 446 39.9
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 2.6e-75 287.0 456 37.9
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 5.8e-75 285.8 424 38.9
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 9.9e-75 285.0 443 40.4
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 1.3e-74 284.6 289 47.8
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 3.8e-74 283.1 441 39.7
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.9e-73 280.8 384 41.4
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 3.2e-73 280.0 434 37.8
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 5.4e-73 279.3 514 37.0
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 5.4e-73 279.3 444 39.2
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 7.1e-73 278.9 434 37.8
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.7e-72 276.9 500 35.6
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 3.5e-72 276.6 434 37.8
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 6.0e-72 275.8 444 38.3
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.3e-71 274.6 448 37.5
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 4.3e-70 269.6 439 39.2
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 3.6e-69 266.5 434 38.7
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 3.1e-68 263.5 418 39.5
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.4e-65 254.6 295 47.1
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 4.6e-64 249.6 377 38.5
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 3.0e-63 246.9 302 45.0
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.6e-59 233.8 318 42.8
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 2.2e-58 230.7 235 50.2
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 6.4e-58 229.2 217 54.4
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 9.3e-57 225.3 158 68.4
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 6.0e-56 222.6 413 34.9
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 7.9e-56 222.2 303 42.2
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 1.1e-54 218.4 291 43.3
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 3.3e-54 216.9 354 40.7
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 2.1e-53 214.2 305 42.0
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 2.1e-53 214.2 507 33.9
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 6.0e-48 196.1 225 50.7
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.9e-47 193.4 352 36.6
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.9e-47 193.4 375 33.9
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 6.7e-47 192.6 353 35.4
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.5e-46 190.7 288 39.6
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.1e-44 183.7 236 40.3
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.5e-43 181.4 331 35.0
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 2.6e-43 180.6 459 30.9
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 5.8e-43 179.5 384 33.1
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.1e-41 175.3 309 35.9
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 3.2e-41 173.7 145 57.9
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 1.2e-40 171.8 129 72.1
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.1e-40 171.0 325 34.2
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 1.5e-38 164.9 242 37.6
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 9.0e-36 155.6 145 55.2
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.0e-35 154.5 543 27.6
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 3.4e-35 153.7 143 52.4
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.2e-33 146.0 287 30.0
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.6e-32 143.7 277 30.0
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 4.6e-32 143.3 102 64.7
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.4e-31 141.7 292 33.9
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 3.0e-31 140.6 176 41.5
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 7.4e-30 136.0 161 42.9
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.1e-28 130.6 404 26.7
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 4.5e-27 126.7 423 26.7
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 2.2e-26 124.4 485 26.8
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 2.2e-26 124.4 471 25.7
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.1e-25 122.1 384 27.6
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 2.1e-24 117.9 425 26.1
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 3.6e-24 117.1 130 44.6
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 7.4e-22 109.4 91 56.0
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 8.2e-21 105.9 122 45.1
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.8e-20 104.8 218 32.6
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 2.0e-19 101.3 183 34.4
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 4.5e-19 100.1 98 52.0
FAN28G0616 Fragaria x ananassa HOM05D001205 ORTHO05D001087 5.9e-19 99.8 147 45.6
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.0e-18 96.7 106 50.0
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.0e-15 89.0 88 51.1
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 8.8e-15 85.9 69 56.5
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 3.3e-14 84.0 266 27.1
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 3.7e-13 80.5 130 36.2
FAN26G1922 Fragaria x ananassa HOM05D003151 ORTHO05D003723 3.1e-12 77.4 48 81.2
FAN26G3264 Fragaria x ananassa HOM05D003151 ORTHO05D003723 1.2e-11 75.5 48 79.2
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 2.6e-11 74.3 127 35.4
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 5.9e-11 73.2 134 32.8
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.8e-10 70.5 180 31.1
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.9e-09 68.2 235 25.1
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 1.8e-07 61.6 98 36.7
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 1.8e-07 61.6 98 36.7
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 4.0e-07 60.5 99 35.4
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 4.0e-07 60.5 95 35.8
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 6.8e-07 59.7 99 37.4


User provided reference genes

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