Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2450 Fragaria x ananassa HOM05D000104 ORTHO05D006071 4.0e-100 368.2 203 100.0
FAN26G2158 Fragaria x ananassa HOM05D000104 ORTHO05D006071 6.0e-64 248.1 191 74.3
FvH4_1g24690 Fragaria vesca HOM05D000104 ORTHO05D006071 6.6e-63 244.6 191 74.3
FAN19G1002 Fragaria x ananassa HOM05D000104 ORTHO05D006071 6.6e-63 244.6 191 74.3
RcHm_v2.0_Chr2g0122191 Rosa chinensis HOM05D000104 ORTHO05D006071 4.2e-57 225.3 211 63.0
Prupe.4G275700 Prunus persica HOM05D000104 ORTHO05D006071 1.5e-38 163.7 194 51.5
MD15G1135700 Malus domestica HOM05D000104 ORTHO05D006071 3.7e-37 159.1 198 50.5
Nn5g28449 Nelumbo nucifera HOM05D000104 ORTHO05D006071 1.3e-34 150.6 193 47.7
CSS0012619 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006071 2.2e-34 149.8 194 47.9
Nn1g08948 Nelumbo nucifera HOM05D000104 ORTHO05D006071 3.8e-34 149.1 193 48.2
CSS0041675 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006071 4.9e-34 148.7 194 47.9
GSVIVG01026450001 Vitis vinifera HOM05D000104 ORTHO05D006071 3.2e-33 146.0 195 47.7
Manes.13G085000 Manihot esculenta HOM05D000104 ORTHO05D006071 4.2e-33 145.6 213 45.1
QL10p041777 Quercus lobata HOM05D000104 ORTHO05D006071 5.5e-33 145.2 193 46.6
Cfa002182 Carpinus fangiana HOM05D000104 ORTHO05D006071 1.2e-32 144.1 214 45.8
Phvul.002G274300 Phaseolus vulgaris HOM05D000104 ORTHO05D006071 1.2e-32 144.1 186 45.2
Cpa.g.sc1639.3 Carica papaya HOM05D000104 ORTHO05D006071 1.6e-32 143.7 205 44.4
CiPaw.04G080100 Carya illinoinensis HOM05D000104 ORTHO05D006071 1.6e-32 143.7 194 47.4
MBI03_g13493_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006071 2.1e-32 143.3 164 51.8
Gorai.006G005000 Gossypium raimondii HOM05D000104 ORTHO05D006071 1.8e-31 140.2 195 47.2
CANSAT01G0184 Cannabis sativa HOM05D000104 ORTHO05D006071 2.3e-31 139.8 193 46.1
PSO528G0238 Papaver somniferum HOM05D000104 ORTHO05D006071 2.3e-31 139.8 193 43.5
VMungo0251G3768 Vigna mungo HOM05D000104 ORTHO05D006071 2.3e-31 139.8 186 43.5
PSO170G5372 Papaver somniferum HOM05D000104 ORTHO05D006071 3.0e-31 139.4 193 43.5
Potri.005G066600 Populus trichocarpa HOM05D000104 ORTHO05D006071 5.1e-31 138.7 210 43.8
Ca_17624_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006071 6.7e-31 138.3 189 44.4
MELO3C024599.2 Cucumis melo HOM05D000104 ORTHO05D006071 8.7e-31 137.9 185 44.9
Gohir.A09G004100 Gossypium hirsutum HOM05D000104 ORTHO05D006071 8.7e-31 137.9 194 45.9
Gohir.D09G003600 Gossypium hirsutum HOM05D000104 ORTHO05D006071 8.7e-31 137.9 194 45.9
Ciclev10000096m.g Citrus clementina HOM05D000104 ORTHO05D006071 1.1e-30 137.5 192 47.4
Sabra07G0084400 Salix brachista HOM05D000104 ORTHO05D006071 1.5e-30 137.1 210 43.3
Eucgr.H05148 Eucalyptus grandis HOM05D000104 ORTHO05D006071 1.9e-30 136.7 190 46.3
Dinv08886 Davidia involucrata HOM05D000104 ORTHO05D006071 2.5e-30 136.3 193 45.6
Dinv17300 Davidia involucrata HOM05D000104 ORTHO05D006071 2.5e-30 136.3 193 45.6
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 2.5e-30 136.3 193 44.0
arahy.Tifrunner.gnm1.ann1.H21J0D Arachis hypogaea HOM05D000104 ORTHO05D006071 4.3e-30 135.6 190 42.6
Nitab4.5_0000316g0170 Nicotiana tabacum HOM05D000104 ORTHO05D006071 5.7e-30 135.2 170 47.6
Lalb_Chr12g0203051 Lupinus albus HOM05D000104 ORTHO05D006071 7.4e-30 134.8 214 40.2
TWI31G0382 Tripterygium wilfordii HOM05D000104 ORTHO05D006071 7.4e-30 134.8 196 44.4
Atru.chr4.943 Acer truncatum HOM05D000104 ORTHO05D006071 9.6e-30 134.4 196 45.9
COL.COLO4_35752 Corchorus olitorius HOM05D000104 ORTHO05D006071 9.6e-30 134.4 192 45.3
ECA240G1465 Erigeron canadensis HOM05D000104 ORTHO05D006071 1.6e-29 133.7 210 40.5
Peaxi162Scf00087g00224 Petunia axillaris HOM05D000104 ORTHO05D006071 2.1e-29 133.3 191 44.5
THA.LOC104800148 Tarenaya hassleriana HOM05D000104 ORTHO05D006071 2.8e-29 132.9 190 43.7
vmacro23146 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 2.8e-29 132.9 192 44.3
CsaV3_6G041230 Cucumis sativus L. HOM05D000104 ORTHO05D006071 3.7e-29 132.5 193 42.5
Potri.007G102800 Populus trichocarpa HOM05D000104 ORTHO05D006071 3.7e-29 132.5 210 43.8
arahy.Tifrunner.gnm1.ann1.DAD8TC Arachis hypogaea HOM05D000104 ORTHO05D006071 4.8e-29 132.1 190 42.1
vmacro23048 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 4.8e-29 132.1 192 44.3
TAR628G1730 Trochodendron aralioides HOM05D000104 ORTHO05D006071 6.3e-29 131.7 194 43.3
DCAR_020007 Daucus carota HOM05D000104 ORTHO05D006071 8.2e-29 131.3 204 40.2
Actinidia20024 Actinidia chinensis HOM05D000104 ORTHO05D006071 1.1e-28 131.0 191 43.5
Sed0020852 Sechium edule HOM05D000104 ORTHO05D006071 1.1e-28 131.0 187 43.9
Psat7g045440 Pisum sativum HOM05D000104 ORTHO05D006071 1.8e-28 130.2 187 41.7
PGR102G2777 Punica granatum HOM05D000104 ORTHO05D006071 1.8e-28 130.2 192 43.8
A06p30560 Brassica napus HOM05D000104 ORTHO05D006071 3.1e-28 129.4 189 44.4
BraA06t26005Z Brassica rapa HOM05D000104 ORTHO05D006071 3.1e-28 129.4 189 44.4
TPR.G37376 Trifolium pratense HOM05D000104 ORTHO05D006071 3.1e-28 129.4 189 41.8
Oeu009636.2 Olea europaea HOM05D000104 ORTHO05D006071 4.1e-28 129.0 240 38.8
C03p62400 Brassica napus HOM05D000104 ORTHO05D006071 5.3e-28 128.6 192 43.8
HanXRQChr13g0423701 Helianthus annuus HOM05D000104 ORTHO05D006071 5.3e-28 128.6 201 40.8
BcaC01g02651 Brassica carinata HOM05D000104 ORTHO05D006071 6.9e-28 128.3 192 43.8
Sp2g27010 Schrenkiella parvula HOM05D000104 ORTHO05D006071 6.9e-28 128.3 195 43.1
BolC3t18499H Brassica oleracea HOM05D000104 ORTHO05D006071 9.0e-28 127.9 192 43.8
ClCG01G015120 Citrullus lanatus HOM05D000104 ORTHO05D006071 9.0e-28 127.9 209 39.7
Hma1.2p1_0512F.1_g169270 Hydrangea macrophylla HOM05D000104 ORTHO05D006071 9.0e-28 127.9 170 48.8
Lj4g0008367 Lotus japonicus HOM05D000104 ORTHO05D006071 1.2e-27 127.5 190 41.6
BcaB02g09760 Brassica carinata HOM05D000104 ORTHO05D006071 1.5e-27 127.1 200 43.0
CDE12G0860 Ceratophyllum demersum HOM05D000104 ORTHO05D006071 2.6e-27 126.3 161 47.2
Thhalv10003558m.g Eutrema salsugineum HOM05D000104 ORTHO05D006071 2.6e-27 126.3 188 43.1
Sabra05G0054900 Salix brachista HOM05D000104 ORTHO05D006071 3.4e-27 125.9 185 45.4
Thecc.01G133200 Theobroma cacao HOM05D000104 ORTHO05D006071 3.4e-27 125.9 139 54.7
Lsat_1_v5_gn_3_126201 Lactuca sativa HOM05D000104 ORTHO05D006071 4.5e-27 125.6 211 39.3
Glyma.08G001900 Glycine max HOM05D000104 ORTHO05D006071 1.0e-26 124.4 189 42.9
Aa31LG1G17950 Aethionema arabicum HOM05D000104 ORTHO05D006071 1.7e-26 123.6 189 44.4
AL8G41210 Arabidopsis lyrata HOM05D000104 ORTHO05D006071 1.7e-26 123.6 167 46.7
CARHR277860 Cardamine hirsuta HOM05D000104 ORTHO05D006071 1.7e-26 123.6 187 43.3
Hund21803 Selenicereus undatus HOM05D000104 ORTHO05D006071 1.7e-26 123.6 188 41.0
Aqoxy6G00301 Aquilegia oxysepala HOM05D000104 ORTHO05D006071 3.8e-26 122.5 186 44.1
Carub.0008s2473 Capsella rubella HOM05D000104 ORTHO05D006071 5.0e-26 122.1 167 46.1
QL10p041826 Quercus lobata HOM05D000104 ORTHO05D006071 5.0e-26 122.1 227 38.3
CAN.G410.42 Capsicum annuum HOM05D000104 ORTHO05D006071 6.5e-26 121.7 190 43.7
AT5G63950 Arabidopsis thaliana HOM05D000104 ORTHO05D006071 8.4e-26 121.3 167 45.5
Medtr8g094070 Medicago truncatula HOM05D000104 ORTHO05D006071 8.4e-26 121.3 192 37.0
CDE04G0721 Ceratophyllum demersum HOM05D000104 ORTHO05D006071 1.9e-25 120.2 179 43.0
Migut.B01201 Erythranthe guttata HOM05D000104 ORTHO05D006071 9.3e-25 117.9 199 42.2
Os04g0692750 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 1.6e-24 117.1 189 44.4
SGA_v2.0_scaffold212G42200 Striga asiatica HOM05D000104 ORTHO05D006071 3.5e-24 115.9 200 39.5
MSTRG.16996 Avicennia marina HOM05D000104 ORTHO05D006071 4.6e-24 115.5 184 41.8
EL10Ac4g09611 Beta vulgaris HOM05D000104 ORTHO05D006071 7.9e-24 114.8 188 41.0
Solyc01g068280.3 Solanum lycopersicum HOM05D000104 ORTHO05D006071 1.0e-23 114.4 184 41.8
Sopen01g030220 Solanum pennellii HOM05D000104 ORTHO05D006071 3.0e-23 112.8 194 40.7
Glyma.05G193900 Glycine max HOM05D000104 ORTHO05D006071 5.1e-23 112.1 143 48.3
AUR62000507 Chenopodium quinoa HOM05D000104 ORTHO05D006071 6.7e-23 111.7 186 40.3
MD15G1135300 Malus domestica HOM05D000104 ORTHO05D022468 6.7e-23 111.7 168 44.0
C02p57520 Brassica napus HOM05D000104 ORTHO05D006071 1.1e-22 110.9 181 42.0
AUR62006852 Chenopodium quinoa HOM05D000104 ORTHO05D006071 1.1e-22 110.9 186 39.8
SalBow5G2719 Salvia bowleyana HOM05D000104 ORTHO05D006071 2.5e-22 109.8 184 40.2
C04p19250 Brassica napus HOM05D000104 ORTHO05D006071 3.3e-22 109.4 181 41.4
BolC4t23458H Brassica oleracea HOM05D000104 ORTHO05D006071 4.3e-22 109.0 177 41.8
unitig_26.g9608 Utricularia gibba HOM05D000104 ORTHO05D006071 5.7e-22 108.6 182 39.0
vmacro08728 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 7.4e-22 108.2 73 75.3
Actinidia14083 Actinidia chinensis HOM05D000104 ORTHO05D006071 9.7e-22 107.8 77 74.0
Cc02_g29430 Coffea canephora HOM05D000104 ORTHO05D006071 1.3e-21 107.5 185 42.2
Ah.04g157970 Amaranthus hybridus HOM05D000104 ORTHO05D006071 3.7e-21 105.9 146 44.5
Sc09g0002280 Simmondsia chinensis HOM05D000104 ORTHO05D006071 8.2e-21 104.8 180 38.3
SEGI_24909 Sequoiadendron giganteum HOM05D000104 ORTHO05D006071 5.3e-20 102.1 177 35.0
Haze_25323 Corylus avellana HOM05D000104 ORTHO05D022468 1.2e-19 100.9 163 44.2
Zm00001eb076670 Zea mays HOM05D000104 ORTHO05D006071 1.2e-19 100.9 73 71.2
Eucgr.C01558 Eucalyptus grandis HOM05D000104 ORTHO05D006071 2.0e-19 100.1 73 69.9
Eucgr.C01537 Eucalyptus grandis HOM05D000104 ORTHO05D006071 3.4e-19 99.4 76 68.4
Lsat_1_v5_gn_3_126241 Lactuca sativa HOM05D000104 ORTHO05D006071 3.8e-18 95.9 63 69.8
ATR0188G008 Amborella trichopoda HOM05D000104 ORTHO05D006071 5.0e-18 95.5 183 37.2
SHI36065 Sapria himalayana HOM05D000104 ORTHO05D006071 5.0e-18 95.5 75 60.0
SpUn0382_0010 Schrenkiella parvula HOM05D000104 ORTHO05D006071 5.0e-18 95.5 85 57.6
Nitab4.5_0006307g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006071 8.5e-18 94.7 72 66.7
BcaC01g02649 Brassica carinata HOM05D000104 ORTHO05D006071 4.2e-17 92.4 166 38.6
SMO146G0288 Selaginella moellendorffii HOM05D000104 ORTHO05D006071 7.2e-17 91.7 185 34.1
Ca_21740_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006071 9.4e-17 91.3 117 45.3
AagrBONN_evm.TU.Sc2ySwM_340.353 Anthoceros agrestis HOM05D000104 ORTHO05D006071 3.6e-16 89.4 177 39.5
Lj4g0017230 Lotus japonicus HOM05D000104 ORTHO05D006071 8.8e-15 84.7 69 53.6
Pp3c14_20620 Physcomitrium patens HOM05D000104 ORTHO05D006071 5.7e-14 82.0 97 45.4
Pp3c2_11030 Physcomitrium patens HOM05D000104 ORTHO05D006071 1.8e-12 77.0 80 50.0
Mapoly0209s0008 Marchantia polymorpha HOM05D000104 ORTHO05D006071 1.3e-10 70.9 116 33.6
Os04g0692700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 6.5e-10 68.6 59 57.6
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 2.5e-09 66.6 102 53.9
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 2.7e-08 63.2 102 52.9
FvH4_4g03133 Fragaria vesca HOM05D000515 ORTHO05D003188 4.7e-08 62.4 75 53.3
BcaC03g17740 Brassica carinata HOM05D001379 ORTHO05D001277 3.9e-07 59.3 45 64.4
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 8.8e-07 58.2 102 48.0


User provided reference genes

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