Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 3.6e-263 911.0 449 100.0
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.2e-258 896.0 449 97.6
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 1.0e-257 892.9 449 97.1
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 3.0e-257 891.3 449 97.6
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.5e-256 889.0 449 96.4
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 7.9e-250 866.7 449 94.4
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 1.2e-229 799.7 450 86.0
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.6e-226 789.3 450 86.0
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 2.6e-216 755.4 459 80.2
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 6.3e-215 750.7 451 80.7
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 1.0e-212 743.4 459 78.6
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 1.7e-212 742.7 444 80.0
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 2.2e-212 742.3 451 80.7
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 2.2e-212 742.3 451 79.8
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 5.5e-211 737.6 454 77.3
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 1.6e-210 736.1 459 77.6
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 6.1e-210 734.2 451 78.5
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 3.0e-209 731.9 450 80.0
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 3.9e-209 731.5 459 76.3
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 5.7e-208 727.6 486 74.3
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 7.4e-208 727.2 451 78.3
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 7.4e-208 727.2 454 77.8
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 3.7e-207 724.9 451 77.8
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 1.1e-206 723.4 451 78.0
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 4.1e-206 721.5 436 78.9
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 1.2e-205 719.9 453 77.3
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 8.0e-202 707.2 450 76.7
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 6.7e-201 704.1 458 74.7
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 2.6e-200 702.2 450 75.3
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 7.5e-200 700.7 455 73.4
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 1.3e-199 699.9 459 75.8
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.1e-198 696.8 438 76.3
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 1.4e-198 696.4 456 75.2
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 2.4e-198 695.7 447 74.7
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.6e-197 693.0 454 73.1
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 1.0e-196 690.3 451 75.4
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 1.1e-195 686.8 460 73.0
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.1e-195 686.8 440 76.1
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.9e-195 686.0 456 73.5
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 1.9e-195 686.0 450 74.4
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 1.9e-195 686.0 436 76.4
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 2.5e-195 685.6 454 74.0
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 3.2e-195 685.3 457 71.8
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 5.5e-195 684.5 450 73.8
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 7.2e-195 684.1 458 73.8
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.2e-194 683.3 454 72.2
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 8.0e-194 680.6 454 71.8
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 1.8e-193 679.5 458 72.5
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.8e-193 679.5 435 73.8
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 2.3e-193 679.1 401 82.3
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 2.3e-193 679.1 451 73.4
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 2.3e-193 679.1 451 72.3
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 2.3e-193 679.1 454 71.6
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 5.2e-193 677.9 449 73.5
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 5.2e-193 677.9 458 71.8
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 5.2e-193 677.9 449 73.3
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 6.8e-193 677.6 450 73.1
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 5.7e-192 674.5 453 73.7
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 9.8e-192 673.7 413 78.9
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 1.7e-191 672.9 450 73.1
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 3.1e-190 668.7 458 71.4
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 3.1e-190 668.7 457 70.9
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 3.1e-190 668.7 451 71.4
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 9.1e-190 667.2 452 72.3
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 2.0e-189 666.0 418 76.3
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 7.7e-189 664.1 452 71.2
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 2.3e-188 662.5 460 70.7
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 3.8e-188 661.8 453 71.5
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 9.5e-187 657.1 515 64.9
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 1.6e-186 656.4 456 70.4
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 8.0e-186 654.1 456 69.7
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 5.2e-185 651.4 459 70.2
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 5.7e-184 647.9 455 69.9
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 5.9e-181 637.9 455 69.0
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 7.8e-181 637.5 455 69.0
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 5.0e-180 634.8 456 69.7
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 5.6e-179 631.3 435 72.2
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 9.5e-179 630.6 456 66.4
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 2.8e-178 629.0 453 68.7
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 2.8e-178 629.0 411 74.5
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 2.6e-176 622.5 383 79.9
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 1.3e-175 620.2 453 68.2
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 1.7e-175 619.8 456 69.1
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 3.7e-175 618.6 456 68.6
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 8.3e-175 617.5 455 66.8
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.9e-174 616.3 453 67.3
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.2e-173 613.6 454 67.4
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.6e-173 613.2 459 66.7
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.3e-172 609.4 385 76.6
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 8.6e-172 607.4 488 64.1
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 7.3e-171 604.4 458 65.1
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 2.0e-168 596.3 450 66.7
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 2.1e-165 586.3 440 66.4
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 3.9e-164 582.0 452 65.0
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 2.3e-161 572.8 459 62.1
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 7.3e-155 551.2 372 73.1
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 1.6e-149 533.5 371 73.3
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 8.4e-135 484.6 443 54.6
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 1.6e-133 480.3 458 51.7
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 2.1e-125 453.4 460 56.3
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 4.6e-125 452.2 338 68.0
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 5.1e-124 448.7 459 49.0
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 2.5e-123 446.4 299 72.9
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 2.9e-119 433.0 455 48.4
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 5.0e-111 405.6 312 66.3
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 7.7e-104 381.7 514 41.1
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.2e-101 374.4 386 51.6
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 7.4e-91 338.6 462 41.8
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 3.8e-87 326.2 247 71.7
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 5.0e-79 299.3 207 66.2
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 6.8e-76 288.9 224 62.1
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 2.3e-68 263.8 442 36.0
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.8e-65 254.2 191 64.4
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 4.6e-40 169.9 107 73.8
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 1.1e-38 165.2 435 28.3
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.2e-37 161.8 296 34.1
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 6.9e-20 102.8 121 39.7
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 2.9e-10 70.9 400 22.0
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.9e-09 68.2 341 23.2
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 7.1e-09 66.2 334 21.9
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 2.1e-08 64.7 335 23.3
HanXRQChr17g0551711 Helianthus annuus HOM05D005508 ORTHO05D006882 3.5e-08 63.9 196 28.6
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 6.0e-08 63.2 338 20.7
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 7.9e-08 62.8 132 27.3
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 7.9e-08 62.8 337 22.6
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 3.0e-07 60.8 128 25.8
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 3.0e-07 60.8 128 25.8
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 3.9e-07 60.5 171 25.7
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 6.7e-07 59.7 142 24.6
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 6.7e-07 59.7 142 24.6
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 6.7e-07 59.7 128 25.8
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 6.7e-07 59.7 169 27.2
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 1.1e-06 58.9 128 25.0
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 1.1e-06 58.9 128 25.8
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.1e-06 58.9 142 29.6
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 1.5e-06 58.5 128 25.0
CSS0037820 Camellia sinensis var. sinensis HOM05D000526 ORTHO05D000956 1.5e-06 58.5 319 22.6
SalBow7G0942 Salvia bowleyana HOM05D001610 ORTHO05D001585 1.9e-06 58.2 268 25.0
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 3.3e-06 57.4 153 25.5
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 4.3e-06 57.0 123 27.6
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 4.3e-06 57.0 214 24.3
ECA236G4836 Erigeron canadensis HOM05D000347 ORTHO05D001997 4.3e-06 57.0 169 27.2
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 4.3e-06 57.0 118 26.3
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 5.7e-06 56.6 243 24.3
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 5.7e-06 56.6 128 25.8
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 7.4e-06 56.2 412 23.5
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 9.6e-06 55.8 153 25.5


User provided reference genes

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