Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 3.9e-70 268.5 187 98.4
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.9e-70 268.5 187 100.0
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.9e-70 268.5 187 100.0
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.0e-69 266.2 187 99.5
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 8.5e-65 250.8 151 97.4
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 9.1e-59 230.7 149 87.2
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 2.0e-58 229.6 148 82.4
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 6.5e-57 224.6 147 90.5
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.1e-56 223.8 154 86.4
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.1e-56 223.8 135 94.8
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.7e-55 219.2 163 77.9
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 2.7e-55 219.2 149 84.6
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.7e-55 218.4 150 78.0
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 4.7e-55 218.4 155 86.5
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.0e-54 215.7 155 85.8
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 3.0e-54 215.7 167 80.2
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 4.0e-54 215.3 141 90.8
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 5.2e-54 214.9 158 83.5
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 6.8e-54 214.5 145 86.9
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 6.8e-54 214.5 151 76.2
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 6.8e-54 214.5 151 84.1
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 6.8e-54 214.5 147 80.3
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 8.8e-54 214.2 148 88.5
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 1.2e-53 213.8 153 84.3
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.0e-53 213.0 160 80.6
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.0e-53 213.0 148 83.1
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 3.4e-53 212.2 147 86.4
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 3.4e-53 212.2 140 90.0
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 5.7e-53 211.5 156 82.7
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 5.7e-53 211.5 157 80.3
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 7.5e-53 211.1 157 80.3
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 7.5e-53 211.1 157 80.3
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.7e-52 209.9 157 81.5
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.7e-52 209.9 157 81.5
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.7e-52 209.9 151 82.8
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.2e-52 209.5 148 79.1
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 2.2e-52 209.5 146 84.2
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 3.7e-52 208.8 152 85.5
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 6.3e-52 208.0 146 83.6
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 8.3e-52 207.6 150 84.0
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-51 207.2 166 78.9
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.1e-51 207.2 146 78.1
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.8e-51 206.5 154 81.8
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 2.4e-51 206.1 152 80.9
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.4e-51 206.1 152 74.3
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 3.1e-51 205.7 157 80.3
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 3.1e-51 205.7 148 83.1
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 3.1e-51 205.7 152 76.3
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 4.1e-51 205.3 149 79.2
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 5.4e-51 204.9 152 80.9
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.4e-51 204.9 139 87.1
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 5.4e-51 204.9 139 87.1
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 5.4e-51 204.9 153 84.3
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 5.4e-51 204.9 167 77.8
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 5.4e-51 204.9 154 81.2
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 7.0e-51 204.5 146 83.6
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 7.0e-51 204.5 155 77.4
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 7.0e-51 204.5 161 79.5
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 9.1e-51 204.1 145 84.1
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 9.1e-51 204.1 146 82.2
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.2e-50 203.8 156 76.9
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 1.2e-50 203.8 159 76.7
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.6e-50 203.4 151 76.2
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 1.6e-50 203.4 159 74.8
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.6e-50 203.4 148 80.4
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 1.6e-50 203.4 152 78.3
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.6e-50 203.4 166 70.5
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 2.0e-50 203.0 173 73.4
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.0e-50 203.0 139 86.3
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 2.0e-50 203.0 140 86.4
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 2.7e-50 202.6 151 84.8
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 2.7e-50 202.6 139 82.0
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 3.5e-50 202.2 173 66.5
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.5e-50 202.2 139 85.6
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 3.5e-50 202.2 139 85.6
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 4.5e-50 201.8 156 80.1
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 5.9e-50 201.4 153 81.7
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 7.7e-50 201.1 164 78.7
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 7.7e-50 201.1 159 78.6
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 7.7e-50 201.1 160 74.4
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.0e-49 200.7 148 75.7
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 1.0e-49 200.7 164 74.4
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 1.0e-49 200.7 164 74.4
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.0e-49 200.7 139 84.9
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.3e-49 200.3 171 66.7
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.3e-49 200.3 171 66.7
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.3e-49 200.3 168 75.0
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 1.3e-49 200.3 151 80.1
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.3e-49 200.3 151 82.1
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 1.7e-49 199.9 160 77.5
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.7e-49 199.9 158 79.1
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 2.2e-49 199.5 151 75.5
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 2.2e-49 199.5 165 75.2
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 2.2e-49 199.5 162 75.9
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 2.2e-49 199.5 160 74.4
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.9e-49 199.1 147 76.2
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 3.8e-49 198.7 152 79.6
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 3.8e-49 198.7 154 81.8
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 5.0e-49 198.4 153 77.1
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 5.0e-49 198.4 151 76.2
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 6.5e-49 198.0 159 78.0
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 6.5e-49 198.0 159 78.0
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 6.5e-49 198.0 159 78.0
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 8.5e-49 197.6 164 73.2
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 8.5e-49 197.6 101 92.1
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.1e-48 197.2 154 80.5
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 1.1e-48 197.2 140 85.0
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.1e-48 197.2 151 80.8
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 1.1e-48 197.2 161 77.0
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.1e-48 197.2 146 83.6
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 1.5e-48 196.8 159 78.6
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.5e-48 196.8 142 82.4
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 3.2e-48 195.7 148 82.4
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 3.2e-48 195.7 148 82.4
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 3.2e-48 195.7 101 88.1
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 4.2e-48 195.3 154 78.6
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 5.5e-48 194.9 154 74.7
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 7.2e-48 194.5 162 77.2
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 7.2e-48 194.5 165 70.9
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 7.2e-48 194.5 155 78.7
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.6e-47 193.4 139 85.6
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.6e-47 193.4 146 80.1
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.6e-47 193.4 147 81.0
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 2.1e-47 193.0 141 85.1
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.1e-47 193.0 153 75.2
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 4.7e-47 191.8 159 79.2
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.0e-46 190.7 184 66.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 2.3e-46 189.5 150 80.0
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 2.3e-46 189.5 113 78.8
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 3.0e-46 189.1 180 68.9
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 4.0e-46 188.7 113 78.8
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.5e-45 186.8 165 73.9
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 2.6e-45 186.0 154 72.7
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 5.7e-45 184.9 138 84.1
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 5.7e-45 184.9 138 84.1
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 7.5e-45 184.5 107 79.4
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 7.5e-45 184.5 153 75.2
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 2.2e-44 183.0 153 75.8
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.8e-44 182.6 151 77.5
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 8.3e-44 181.0 91 92.3
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 9.1e-43 177.6 104 85.6
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 9.1e-43 177.6 148 73.0
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.0e-41 174.1 148 72.3
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 1.3e-41 173.7 112 73.2
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 6.6e-41 171.4 116 72.4
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 8.6e-41 171.0 89 89.9
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.5e-40 169.5 107 80.4
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 4.3e-40 168.7 89 88.8
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.3e-36 157.1 80 88.8
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 3.5e-34 149.1 94 68.1
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 4.6e-34 148.7 148 67.6
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 3.9e-33 145.6 126 63.5
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 4.7e-31 138.7 80 78.8
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 8.9e-30 134.4 103 68.9
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 9.2e-27 124.4 60 96.7
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 6.0e-26 121.7 76 67.1
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 3.6e-23 112.5 57 93.0
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 8.1e-23 111.3 92 62.0
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.7e-20 103.6 111 47.7
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 1.4e-19 100.5 96 55.2
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 2.4e-19 99.8 96 55.2
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 3.2e-19 99.4 109 50.5
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.7e-18 96.3 49 85.7
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 3.2e-11 72.8 45 77.8
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 4.1e-11 72.4 44 79.5
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 4.1e-11 72.4 44 79.5
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 4.1e-11 72.4 137 36.5
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 2.7e-10 69.7 153 49.0
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 3.5e-10 69.3 44 77.3
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 3.5e-10 69.3 44 77.3
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 3.5e-10 69.3 44 77.3
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 4.7e-07 58.9 35 74.3


User provided reference genes

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