Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.6e-126 456.1 223 100.0
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.7e-110 402.1 223 91.0
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.0e-88 330.5 193 88.6
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.0e-77 293.9 185 82.7
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.8e-75 285.8 193 75.1
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 9.8e-68 260.8 189 69.8
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 3.7e-67 258.8 186 69.4
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.1e-66 257.3 184 70.1
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.1e-66 257.3 193 67.9
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.8e-66 256.5 189 66.7
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 3.2e-66 255.8 189 69.8
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 7.0e-66 254.6 186 69.4
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 7.0e-66 254.6 186 69.4
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.0e-65 253.1 186 68.3
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 4.6e-65 251.9 219 59.8
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 5.9e-65 251.5 186 67.2
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 7.8e-65 251.1 189 64.6
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.0e-64 250.8 186 67.2
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.0e-64 250.8 189 66.7
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.0e-64 250.8 191 65.4
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.3e-64 250.4 194 63.9
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 3.0e-64 249.2 189 67.2
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 3.0e-64 249.2 186 67.2
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.9e-64 248.8 193 64.8
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 5.0e-64 248.4 193 64.2
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 5.0e-64 248.4 187 65.8
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.6e-64 248.1 186 65.1
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 6.6e-64 248.1 189 66.1
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 8.6e-64 247.7 194 63.4
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.1e-63 247.3 193 63.2
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.5e-63 246.9 189 65.6
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.9e-63 246.5 189 64.6
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 2.5e-63 246.1 194 63.4
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 4.3e-63 245.4 189 64.0
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 4.3e-63 245.4 190 63.7
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.2e-62 243.8 187 63.6
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.6e-62 243.4 186 63.4
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.7e-62 241.9 186 63.4
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 6.2e-62 241.5 223 58.3
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 6.2e-62 241.5 223 58.3
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 6.2e-62 241.5 189 61.9
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 8.0e-62 241.1 180 67.8
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.8e-61 240.0 186 64.5
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.1e-61 239.2 189 63.5
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 8.9e-61 237.7 187 62.0
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.9e-61 237.7 186 63.4
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.9e-61 237.7 186 63.4
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.5e-60 236.9 189 62.4
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.6e-60 236.1 190 62.6
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.6e-60 236.1 186 62.9
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.8e-60 235.0 190 62.1
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 5.8e-60 235.0 183 63.4
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 5.8e-60 235.0 183 63.4
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 9.8e-60 234.2 188 63.3
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.3e-59 233.8 190 61.6
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.9e-59 232.6 189 61.9
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.7e-59 232.3 190 61.1
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 6.4e-59 231.5 189 61.4
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 6.4e-59 231.5 190 61.6
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 8.3e-59 231.1 180 64.4
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.1e-58 230.7 190 61.1
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.1e-58 230.7 189 60.3
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.9e-58 229.9 180 65.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 5.4e-58 228.4 201 57.2
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.6e-57 226.9 184 61.4
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 2.0e-57 226.5 186 59.7
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.0e-57 226.5 189 58.2
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 4.6e-57 225.3 189 57.7
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.8e-57 224.6 189 60.3
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.1e-55 220.7 190 58.4
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.1e-55 220.7 186 60.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.9e-55 219.9 186 59.7
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.9e-55 219.9 186 59.7
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 2.5e-55 219.5 186 59.1
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 2.5e-55 219.5 185 59.5
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 4.3e-55 218.8 185 58.4
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 5.6e-55 218.4 190 57.4
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 9.5e-55 217.6 236 50.4
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.2e-54 217.2 178 60.1
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 2.1e-54 216.5 186 58.6
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.6e-54 215.7 189 57.1
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 8.1e-54 214.5 188 56.9
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.1e-53 214.2 188 56.9
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.4e-53 213.8 177 59.9
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.4e-53 213.8 192 56.8
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.4e-53 213.8 210 53.8
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 2.3e-53 213.0 182 59.9
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 6.8e-53 211.5 192 56.2
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 6.8e-53 211.5 190 55.8
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-52 210.7 190 54.7
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-52 210.7 190 53.7
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 3.4e-52 209.1 185 57.3
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 3.4e-52 209.1 184 54.3
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 4.4e-52 208.8 184 54.9
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 7.5e-52 208.0 185 55.7
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 7.5e-52 208.0 185 55.7
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 7.5e-52 208.0 185 55.7
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.2e-51 206.5 185 57.3
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.2e-51 206.5 204 53.9
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 2.9e-51 206.1 185 54.6
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.9e-51 205.3 184 55.4
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.2e-50 202.6 188 54.3
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 7.1e-50 201.4 178 57.3
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.2e-49 200.7 185 54.1
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 4.6e-49 198.7 184 54.9
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 6.0e-49 198.4 186 51.6
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.0e-49 198.4 189 50.3
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.5e-47 193.7 219 48.9
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.5e-47 193.0 190 53.7
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 3.3e-47 192.6 177 52.0
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 4.3e-47 192.2 179 53.1
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-46 190.3 185 50.3
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.3e-45 186.4 147 64.6
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 2.3e-45 186.4 173 52.6
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.1e-45 186.0 188 48.9
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.1e-45 186.0 186 50.0
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 8.9e-45 184.5 176 49.4
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-43 180.3 192 46.9
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.9e-42 176.8 166 53.6
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-41 172.2 186 47.3
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.3e-40 170.6 189 43.9
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.9e-40 169.1 151 56.3
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.6e-38 163.7 146 60.3
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 4.7e-38 162.2 185 43.2
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 8.1e-38 161.4 107 68.2
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.4e-37 160.6 154 51.9
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 8.9e-37 157.9 181 48.1
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.2e-36 157.5 144 52.8
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.7e-35 153.7 170 42.4
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.2e-35 153.3 186 44.1
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.9e-34 150.2 170 42.9
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 7.1e-34 148.3 188 39.9
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 7.1e-34 148.3 140 52.9
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-33 147.5 203 41.4
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-33 147.5 156 46.8
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.7e-32 141.4 152 47.4
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.9e-31 140.2 182 42.9
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-31 140.2 154 44.8
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.3e-31 138.3 137 50.4
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 6.2e-30 135.2 101 60.4
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 9.9e-28 127.9 112 59.8
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.9e-28 127.9 145 44.8
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 2.2e-27 126.7 112 59.8
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 1.9e-26 123.6 113 58.4
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.2e-25 120.9 184 30.4
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 5.6e-23 112.1 76 65.8
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.1e-21 106.3 179 35.8
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.2e-19 100.1 82 59.8
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.2e-19 100.1 114 45.6
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 5.5e-18 95.5 76 52.6
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.6e-17 92.4 70 62.9
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 4.6e-17 92.4 109 45.9
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.8e-11 72.8 64 51.6
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 2.7e-09 66.6 182 27.5
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 4.8e-06 55.8 109 34.9


User provided reference genes

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