Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 0.0e+00 1378.6 707 100.0
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 0.0e+00 1378.6 707 100.0
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 0.0e+00 1329.7 707 95.8
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 0.0e+00 1316.6 707 94.9
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 0.0e+00 1312.7 707 94.6
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 2.1e-249 865.9 504 85.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.0e-248 863.6 504 85.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.4e-237 825.9 679 65.2
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 4.4e-231 805.1 676 63.6
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 3.0e-203 712.6 699 57.8
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 3.8e-190 669.1 734 53.5
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 3.8e-190 669.1 734 53.5
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 7.9e-188 661.4 681 52.4
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.6e-185 653.7 730 52.2
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 2.3e-179 633.3 855 47.1
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 3.7e-177 625.9 623 55.9
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 4.1e-176 622.5 689 52.5
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 4.5e-175 619.0 645 54.3
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 8.5e-174 614.8 745 48.1
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 5.5e-173 612.1 703 50.2
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.6e-172 610.5 686 52.6
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 6.1e-172 608.6 649 51.0
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.3e-169 600.9 696 50.0
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 4.8e-169 599.0 700 50.0
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 8.2e-169 598.2 714 49.0
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 5.0e-166 589.0 698 49.9
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.4e-165 587.4 689 48.6
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.9e-165 587.0 701 48.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.2e-164 584.3 736 47.6
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 3.6e-164 582.8 698 49.0
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.7e-161 573.9 683 48.2
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 6.3e-161 572.0 735 47.1
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.8e-160 570.5 704 48.4
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.4e-160 570.1 616 51.8
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 3.1e-160 569.7 732 47.3
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 2.6e-159 566.6 678 48.1
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.3e-158 564.3 695 48.1
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.5e-158 561.6 691 49.3
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.1e-157 561.2 730 47.4
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.1e-157 561.2 730 47.4
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.2e-156 557.8 693 49.8
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 3.3e-154 549.7 678 48.2
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.1e-152 543.1 679 47.3
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.7e-151 540.0 700 46.1
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.5e-151 539.3 679 47.3
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.5e-151 539.3 698 46.4
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 5.0e-150 535.8 730 46.3
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 3.2e-149 533.1 708 46.3
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 5.5e-149 532.3 681 47.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 7.2e-149 531.9 689 46.9
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.2e-148 531.2 709 46.1
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 8.0e-148 528.5 682 46.9
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 5.7e-146 522.3 685 46.6
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 3.7e-145 519.6 708 45.8
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 4.8e-145 519.2 674 46.7
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 6.3e-145 518.8 678 46.9
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 4.1e-144 516.2 677 46.7
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 5.4e-144 515.8 692 45.5
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 5.9e-143 512.3 684 45.5
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.3e-142 510.4 674 45.7
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 3.8e-142 509.6 682 44.9
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 6.6e-142 508.8 676 45.4
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.6e-140 504.2 678 45.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.3e-139 500.4 679 45.2
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.0e-139 500.0 680 45.1
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.2e-139 499.2 673 43.5
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.2e-138 498.0 718 43.9
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.2e-138 498.0 501 55.5
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 2.6e-138 496.9 687 45.3
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 7.5e-138 495.4 679 45.1
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.7e-137 494.2 674 45.1
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 2.8e-137 493.4 670 44.2
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.8e-136 490.7 682 45.5
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.7e-135 486.9 589 48.0
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.7e-135 486.9 589 48.2
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 4.7e-132 476.1 675 43.4
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.1e-128 464.9 665 44.5
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.1e-128 463.0 670 43.4
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.1e-128 463.0 645 43.9
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 2.0e-127 460.7 674 43.3
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 2.0e-127 460.7 694 42.9
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 6.0e-127 459.1 678 41.2
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.3e-125 453.0 642 43.8
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.6e-124 451.1 472 52.5
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.2e-124 449.1 692 40.6
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 8.0e-124 448.7 683 41.6
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.7e-121 441.0 661 42.8
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 4.9e-121 439.5 499 49.3
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 6.4e-121 439.1 703 41.1
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 3.5e-119 433.3 700 41.7
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.3e-118 431.4 703 40.4
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.5e-117 427.9 679 39.0
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 4.3e-117 426.4 695 39.4
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.2e-116 424.9 601 42.4
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 4.4e-114 416.4 581 41.5
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.0e-110 405.2 687 40.3
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 5.6e-109 399.4 418 52.9
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 5.2e-107 392.9 374 57.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.2e-106 391.7 695 39.7
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.3e-105 388.3 679 38.0
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.6e-103 381.3 674 37.7
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 2.1e-103 380.9 683 38.7
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.1e-103 380.9 688 38.8
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.0e-102 378.6 696 38.2
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.7e-102 377.9 392 51.8
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 5.1e-102 376.3 693 38.7
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 5.1e-102 376.3 693 38.4
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.6e-100 371.3 661 36.6
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 2.4e-99 367.5 504 44.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.0e-99 366.7 582 41.9
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 6.9e-99 365.9 659 36.0
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.4e-98 363.2 501 43.9
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.9e-93 347.8 596 39.1
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 7.3e-93 345.9 363 52.1
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.6e-87 326.6 671 34.9
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 4.3e-85 320.1 581 35.1
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.4e-85 319.3 428 44.4
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.8e-84 316.6 678 33.5
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.0e-78 298.9 303 52.8
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 6.5e-73 279.6 408 42.4
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.2e-72 276.9 665 33.4
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.8e-67 261.5 728 31.3
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.2e-66 258.8 389 41.4
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 3.7e-60 237.3 644 29.5
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.0e-57 229.2 404 36.9
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 2.9e-57 227.6 667 29.2
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 8.5e-57 226.1 177 63.3
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.8e-52 211.1 624 26.6
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 4.8e-52 210.3 136 76.5
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.7e-49 201.8 136 75.0
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.5e-40 171.4 229 44.5
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 9.7e-37 159.5 147 56.5
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 7.7e-34 149.8 511 27.4
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-33 149.4 584 24.8
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.5e-29 135.6 479 25.7
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.7e-29 133.7 228 37.7
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.3e-25 121.7 108 53.7
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.9e-24 118.6 337 29.7
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 4.2e-24 117.5 161 41.0
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.8e-22 112.1 166 44.6
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.2e-22 110.5 189 38.6
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.8e-19 102.1 198 31.3
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 6.1e-15 87.0 173 37.6
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.8e-14 83.6 203 29.1
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.2e-12 78.6 76 52.6
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.9e-12 78.2 82 54.9
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 3.2e-11 74.7 76 51.3
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.0e-11 73.6 239 31.4
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.7e-10 71.6 152 34.2
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 1.7e-09 68.9 110 33.6
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 6.6e-09 67.0 54 53.7
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-08 66.2 163 28.8
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 4.7e-07 60.8 326 22.7
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 2.3e-06 58.5 107 37.4
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 5.2e-06 57.4 150 33.3


User provided reference genes

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