Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.8e-263 911.4 449 100.0
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 3.1e-262 907.9 449 99.3
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 3.2e-259 897.9 449 97.8
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.7e-257 892.1 449 97.6
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 8.7e-257 889.8 449 96.4
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 3.9e-249 864.4 449 93.3
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 2.8e-231 805.1 450 86.2
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 4.6e-226 787.7 451 86.0
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 3.1e-214 748.4 459 79.5
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 3.4e-213 745.0 451 80.0
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 2.2e-212 742.3 451 80.3
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 5.0e-212 741.1 454 77.3
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 1.9e-211 739.2 459 78.2
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 9.4e-211 736.9 436 80.5
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 1.2e-210 736.5 451 78.7
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 8.0e-210 733.8 459 77.1
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 1.0e-209 733.4 450 80.0
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.8e-209 732.6 454 78.0
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 1.1e-208 729.9 451 77.6
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 1.1e-208 729.9 486 74.3
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.0e-208 729.2 451 78.0
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 3.3e-208 728.4 459 76.0
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 9.7e-208 726.9 451 78.7
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 9.7e-208 726.9 451 77.6
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 4.8e-207 724.5 453 77.0
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 2.6e-205 718.8 436 78.4
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 2.3e-201 705.7 450 75.6
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 6.7e-201 704.1 450 76.2
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 2.0e-200 702.6 455 74.1
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 2.6e-200 702.2 459 76.0
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 5.7e-200 701.0 458 74.2
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 2.2e-199 699.1 447 74.9
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.1e-198 696.8 438 76.5
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.8e-198 696.0 454 73.6
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 9.1e-198 693.7 460 73.9
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 9.1e-198 693.7 458 74.9
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 1.2e-197 693.3 456 74.8
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 2.7e-197 692.2 451 75.6
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 3.2e-195 685.3 457 71.8
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 3.2e-195 685.3 454 72.5
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 7.2e-195 684.1 401 82.8
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 7.2e-195 684.1 450 74.0
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 9.4e-195 683.7 456 73.5
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 9.4e-195 683.7 454 72.2
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.6e-194 682.9 441 76.0
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 2.1e-194 682.6 450 73.3
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 2.1e-194 682.6 436 75.9
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 2.7e-194 682.2 454 72.0
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 4.7e-194 681.4 454 73.6
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 4.7e-194 681.4 458 72.5
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.0e-193 680.2 435 73.8
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 1.0e-193 680.2 453 73.7
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 4.0e-193 678.3 458 71.8
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 5.2e-193 677.9 451 73.2
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 1.2e-192 676.8 449 73.3
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 2.0e-192 676.0 451 72.5
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 2.6e-192 675.6 413 78.7
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 9.8e-192 673.7 450 72.9
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 1.7e-191 672.9 449 73.3
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 1.1e-190 670.2 451 71.6
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 1.4e-190 669.8 458 71.4
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 1.4e-190 669.8 450 73.1
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 4.1e-190 668.3 457 70.9
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 2.7e-189 665.6 418 75.8
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 5.9e-189 664.5 452 71.0
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 1.3e-188 663.3 452 72.1
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 2.3e-188 662.5 453 71.7
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 2.5e-187 659.1 460 70.2
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 7.2e-187 657.5 456 71.1
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 7.2e-187 657.5 515 64.7
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 1.6e-186 656.4 456 70.4
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 3.6e-186 655.2 459 71.0
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 1.0e-185 653.7 455 71.2
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.4e-182 643.3 454 70.0
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 9.2e-182 640.6 455 69.9
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 1.7e-180 636.3 453 70.2
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 2.9e-180 635.6 435 72.9
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 2.9e-180 635.6 456 70.0
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 3.3e-179 632.1 456 66.9
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 7.3e-179 630.9 411 74.0
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 2.6e-176 622.5 453 68.4
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 4.4e-176 621.7 456 69.5
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 4.4e-176 621.7 457 68.7
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 3.7e-175 618.6 453 67.5
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 3.7e-175 618.6 383 78.6
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 2.4e-174 615.9 457 68.1
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 9.2e-174 614.0 455 66.8
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 3.5e-173 612.1 488 64.8
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 6.0e-173 611.3 385 77.1
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.7e-172 609.8 459 66.4
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 5.0e-172 608.2 458 64.6
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 4.0e-169 598.6 450 66.9
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.4e-166 590.1 440 66.8
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.6e-165 586.6 452 66.2
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 6.2e-162 574.7 459 62.7
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 5.6e-155 551.6 372 73.4
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 2.7e-149 532.7 371 73.3
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 1.1e-134 484.2 458 52.2
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 1.9e-134 483.4 443 54.4
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 9.3e-126 454.5 460 56.5
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 4.6e-125 452.2 338 68.6
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 1.5e-123 447.2 459 48.4
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.5e-123 447.2 299 72.9
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 2.9e-119 433.0 455 48.4
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 1.7e-111 407.1 312 67.0
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 1.7e-103 380.6 514 41.2
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 3.2e-102 376.3 386 51.8
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 9.7e-91 338.2 462 41.6
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 8.5e-87 325.1 247 71.7
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.0e-79 301.6 207 66.7
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.8e-74 283.5 224 60.3
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 1.8e-68 264.2 441 36.7
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 4.9e-66 256.1 191 66.0
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 3.5e-40 170.2 107 73.8
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 3.0e-39 167.2 435 28.3
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 6.6e-39 166.0 304 34.5
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 2.4e-20 104.4 121 40.5
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 3.8e-10 70.5 335 24.8
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.9e-09 68.2 341 23.2
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 4.2e-09 67.0 336 23.8
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 5.5e-09 66.6 334 22.5
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 4.6e-08 63.5 338 20.7
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 1.3e-07 62.0 181 25.4
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 3.0e-07 60.8 128 26.6
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 3.0e-07 60.8 128 26.6
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 3.0e-07 60.8 251 21.9
SalBow7G0942 Salvia bowleyana HOM05D001610 ORTHO05D001585 3.9e-07 60.5 253 26.9
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 6.7e-07 59.7 142 25.4
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 6.7e-07 59.7 142 25.4
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 6.7e-07 59.7 128 26.6
CSS0037820 Camellia sinensis var. sinensis HOM05D000526 ORTHO05D000956 8.7e-07 59.3 319 22.3
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 1.1e-06 58.9 128 25.8
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 1.1e-06 58.9 214 24.8
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 1.1e-06 58.9 128 26.6
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 1.5e-06 58.5 128 25.8
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.9e-06 58.2 171 25.1
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 3.3e-06 57.4 338 23.1
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 3.3e-06 57.4 169 26.6
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 4.3e-06 57.0 243 24.7
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 4.3e-06 57.0 118 27.1
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 5.7e-06 56.6 415 22.9
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 5.7e-06 56.6 142 28.2
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 7.4e-06 56.2 289 24.6
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 9.6e-06 55.8 123 26.8
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 9.6e-06 55.8 128 25.0
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 9.6e-06 55.8 153 24.8


User provided reference genes

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