Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2404 Fragaria x ananassa HOM05D001937 ORTHO05D003828 0.0e+00 1198.0 619 100.0
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 0.0e+00 1142.9 617 96.4
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 0.0e+00 1139.8 617 96.4
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 0.0e+00 1139.0 595 96.6
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 2.3e-284 981.9 626 84.3
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 2.3e-215 752.7 609 68.1
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 7.3e-214 747.7 597 68.8
FAN26G2897 Fragaria x ananassa HOM05D001937 ORTHO05D003828 4.9e-202 708.4 359 96.7
RcHm_v2.0_Chr5g0013481 Rosa chinensis HOM05D001937 ORTHO05D003828 4.9e-194 681.8 602 62.3
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 8.5e-178 627.9 614 56.7
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 9.4e-169 597.8 610 55.7
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 2.1e-168 596.7 604 57.5
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 1.5e-166 590.5 614 55.4
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.4e-164 583.9 604 56.5
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 2.4e-164 583.2 604 56.6
Dinv15990 Davidia involucrata HOM05D001937 ORTHO05D003828 5.0e-162 575.5 610 55.4
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 5.5e-161 572.0 613 53.3
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 6.1e-160 568.5 615 53.2
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 8.8e-159 564.7 621 52.7
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 3.3e-158 562.8 607 55.0
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 2.8e-157 559.7 609 52.7
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 4.1e-156 555.8 612 52.1
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 7.2e-153 545.0 610 51.6
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 1.4e-151 540.8 612 52.3
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 3.4e-150 536.2 613 52.0
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 7.5e-150 535.0 632 50.2
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 4.8e-149 532.3 614 52.3
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 4.8e-149 532.3 614 52.3
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 4.8e-149 532.3 616 51.5
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 6.3e-149 531.9 621 51.2
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 8.3e-149 531.6 617 50.9
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 4.1e-148 529.3 644 50.0
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 2.0e-147 526.9 612 50.5
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 4.5e-147 525.8 588 52.2
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 2.3e-146 523.5 679 47.7
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 8.6e-146 521.5 610 50.3
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 1.1e-145 521.2 614 50.5
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 1.5e-145 520.8 679 47.4
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 4.7e-144 515.8 617 50.1
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 1.0e-143 514.6 616 50.6
Sed0011905 Sechium edule HOM05D001937 ORTHO05D003828 1.8e-143 513.8 612 49.0
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 2.6e-142 510.0 614 50.2
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 3.4e-142 509.6 622 49.5
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 7.5e-142 508.4 607 50.9
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 4.9e-141 505.8 610 49.5
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 1.8e-140 503.8 606 50.3
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 3.1e-140 503.1 619 48.5
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 2.7e-139 500.0 613 49.3
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 7.8e-139 498.4 614 49.3
Solyc07g006820.4 Solanum lycopersicum HOM05D001937 ORTHO05D003828 2.9e-138 496.5 600 49.8
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 5.0e-138 495.7 602 50.3
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 6.6e-138 495.4 613 50.6
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 8.6e-138 495.0 617 46.7
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 3.6e-136 489.6 646 47.7
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 6.1e-136 488.8 608 49.0
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 8.0e-136 488.4 608 49.7
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 4.0e-135 486.1 610 50.8
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 9.8e-134 481.5 605 48.4
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 1.7e-133 480.7 617 47.0
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 1.1e-132 478.0 719 43.3
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 1.2e-131 474.6 604 48.7
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 1.5e-129 467.6 629 46.9
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 1.8e-127 460.7 557 49.9
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 5.8e-126 455.7 651 44.9
Migut.B00560 Erythranthe guttata HOM05D001937 ORTHO05D003828 5.8e-126 455.7 607 47.8
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 6.4e-125 452.2 613 47.0
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 1.2e-123 448.0 645 44.8
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 7.3e-121 438.7 608 46.4
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 9.5e-121 438.3 648 44.4
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 4.7e-120 436.0 614 45.9
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 2.2e-117 427.2 643 44.9
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 1.4e-116 424.5 617 43.8
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 2.7e-115 420.2 611 45.2
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 2.7e-115 420.2 610 43.3
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 1.0e-114 418.3 620 43.7
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 6.6e-114 415.6 708 40.8
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 2.8e-112 410.2 635 42.2
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 2.6e-110 403.7 613 42.4
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 4.9e-109 399.4 618 43.7
Prupe.1G009900 Prunus persica HOM05D001937 ORTHO05D003828 6.4e-109 399.1 608 47.4
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 2.4e-108 397.1 413 53.0
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 4.6e-107 392.9 491 49.1
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 1.0e-106 391.7 586 43.5
HPP92_017203 Vanilla planifolia HOM05D001937 ORTHO05D003828 1.0e-106 391.7 613 42.7
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 6.6e-106 389.0 623 40.6
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 3.6e-104 383.3 618 42.1
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 5.2e-103 379.4 619 39.3
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 2.6e-102 377.1 601 40.9
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 7.6e-102 375.6 625 40.2
CDE08G0555 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 7.6e-102 375.6 664 39.9
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 9.9e-102 375.2 609 40.7
Aqoxy3G01595 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 2.2e-101 374.0 618 41.3
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 4.9e-101 372.9 617 40.7
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 1.4e-100 371.3 609 41.5
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 1.9e-100 370.9 619 40.2
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 3.2e-100 370.2 620 39.2
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 2.1e-99 367.5 617 40.4
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 1.3e-98 364.8 630 38.6
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 3.3e-97 360.1 789 34.3
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 3.6e-96 356.7 614 40.6
Cpa.g.sc471.1 Carica papaya HOM05D001937 ORTHO05D003828 1.4e-95 354.8 476 46.2
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 1.5e-94 351.3 609 39.7
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 2.9e-93 347.1 415 47.7
Zm00001eb386900 Zea mays HOM05D001937 ORTHO05D003828 2.9e-93 347.1 604 40.4
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 3.8e-93 346.7 600 41.2
Atru.chr8.1123 Acer truncatum HOM05D001937 ORTHO05D003828 1.3e-90 338.2 552 41.7
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 1.4e-84 318.2 613 38.0
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 2.4e-84 317.4 613 38.2
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 2.4e-84 317.4 613 38.2
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 3.5e-83 313.5 614 37.9
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 1.5e-81 308.1 607 37.1
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 7.4e-81 305.8 618 37.2
Aqoxy3G01486 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 1.1e-79 302.0 588 38.1
Atru.chr3.3792 Acer truncatum HOM05D001937 ORTHO05D003828 2.2e-77 294.3 366 48.9
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 1.0e-69 268.9 571 35.6
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 7.2e-68 262.7 617 33.7
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 1.8e-63 248.1 606 34.0
Mapoly0010s0177 Marchantia polymorpha HOM05D001937 ORTHO05D003828 6.9e-63 246.1 668 32.0
SEGI_13781 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 1.0e-61 242.3 557 34.3
Pp3c14_1870 Physcomitrium patens HOM05D001937 ORTHO05D003828 3.6e-59 233.8 669 31.5
Atru.chr3.3791 Acer truncatum HOM05D001937 ORTHO05D003828 3.0e-58 230.7 248 51.6
AL3G32430 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 7.4e-57 226.1 543 33.3
CARHR094480 Cardamine hirsuta HOM05D001937 ORTHO05D003828 1.2e-54 218.8 554 31.9
Hma1.2p1_1093F.1_g256120 Hydrangea macrophylla HOM05D001937 ORTHO05D003828 1.6e-51 208.4 291 49.1
Os06g0645901 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 3.9e-50 203.8 360 36.7
Pp3c10_350 Physcomitrium patens HOM05D001937 ORTHO05D003828 6.5e-45 186.4 659 28.2
VMungo1215G2376 Vigna mungo HOM05D001937 ORTHO05D003828 2.2e-40 171.4 133 69.2
AagrBONN_evm.TU.Sc2ySwM_117.3403 Anthoceros agrestis HOM05D001937 ORTHO05D003828 8.5e-37 159.5 674 26.7
Lsat_1_v5_gn_0_31600 Lactuca sativa HOM05D001937 ORTHO05D003828 1.3e-32 145.6 139 54.0
MBI02_g44614_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D003828 1.6e-30 138.7 171 49.7
QL11p024034 Quercus lobata HOM05D001937 ORTHO05D003828 4.5e-30 137.1 226 42.9
SMO118G0440 Selaginella moellendorffii HOM05D001937 ORTHO05D003828 5.9e-30 136.7 649 26.8
QL11p024040 Quercus lobata HOM05D001937 ORTHO05D003828 1.9e-28 131.7 127 60.6
Lsat_1_v5_gn_4_144240 Lactuca sativa HOM05D001937 ORTHO05D003828 6.1e-27 126.7 120 56.7
vmacro17328 Vaccinium macrocarpon HOM05D000907 ORTHO05D000753 2.0e-25 121.7 121 57.0
Lsat_1_v5_gn_5_102200 Lactuca sativa HOM05D001937 ORTHO05D003828 8.3e-24 116.3 106 61.3
CDE09G0131 Ceratophyllum demersum HOM05D001937 ORTHO05D000005 5.4e-23 113.6 130 53.1
Cpa.g.sc471.3 Carica papaya HOM05D001937 ORTHO05D003828 4.3e-20 104.0 145 46.2
Lsat_1_v5_gn_7_27720 Lactuca sativa HOM05D001937 ORTHO05D003828 8.9e-18 96.3 105 51.4
Oeu001825.1 Olea europaea HOM05D001937 ORTHO05D003828 2.2e-16 91.7 61 75.4
Aa31LG7G15330 Aethionema arabicum HOM05D001937 ORTHO05D003828 1.2e-14 85.9 108 41.7
Haze_10547 Corylus avellana HOM05D001937 ORTHO05D003828 1.7e-13 82.0 96 53.1
SEGI_13098 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 3.9e-13 80.9 60 68.3
Aa31LG7G15340 Aethionema arabicum HOM05D001937 ORTHO05D003828 2.3e-10 71.6 134 41.0
CBR_g2821 Chara braunii HOM05D001937 ORTHO05D003828 3.4e-09 67.8 164 36.0
Lsat_1_v5_gn_4_137320 Lactuca sativa HOM05D000154 ORTHO05D000092 4.9e-08 63.9 51 64.7
Aa31LG7G15320 Aethionema arabicum HOM05D001937 ORTHO05D003828 2.7e-06 58.2 76 44.7


User provided reference genes

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