Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.8e-217 756.5 383 100.0
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.1e-204 716.5 362 100.0
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.0e-201 705.7 363 98.9
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.1e-196 689.9 363 95.9
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 3.3e-196 688.3 363 96.7
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 6.2e-195 684.1 363 95.3
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 8.9e-194 680.2 363 94.8
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.0e-178 628.2 381 87.4
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 4.9e-176 621.3 363 85.1
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 3.3e-172 608.6 363 84.0
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 4.0e-162 575.1 364 81.0
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 6.4e-160 567.8 364 79.9
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 8.4e-160 567.4 364 78.3
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.8e-157 559.7 364 78.8
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 3.9e-157 558.5 364 76.1
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 3.9e-157 558.5 364 78.3
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.9e-156 556.2 357 78.2
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 2.5e-156 555.8 362 77.6
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 3.3e-156 555.4 363 78.0
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 3.3e-156 555.4 380 74.5
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 3.3e-156 555.4 363 77.4
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 4.3e-156 555.1 374 74.6
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 9.6e-156 553.9 364 79.1
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 4.8e-155 551.6 363 76.6
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 2.4e-154 549.3 374 75.9
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 9.0e-154 547.4 385 71.9
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.0e-153 546.2 368 75.8
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 2.2e-152 542.7 367 75.2
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 6.5e-152 541.2 366 76.0
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 1.9e-151 539.7 371 72.2
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 9.3e-151 537.3 387 72.4
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.0e-149 533.9 366 75.7
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.8e-149 533.1 364 75.8
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 1.8e-149 533.1 364 75.0
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 2.5e-148 529.3 364 74.2
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 2.1e-147 526.2 363 73.6
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 2.0e-145 519.6 364 73.4
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 5.8e-145 518.1 363 71.9
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 7.6e-145 517.7 365 74.0
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.3e-144 516.9 364 72.5
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 1.7e-144 516.5 365 74.5
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 3.8e-144 515.4 367 72.5
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 5.0e-144 515.0 364 73.6
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.4e-144 514.2 376 74.5
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 8.4e-144 514.2 363 71.1
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 8.4e-144 514.2 364 73.4
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.1e-143 513.8 372 72.3
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.4e-143 513.5 364 73.4
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.5e-143 512.7 364 73.1
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 3.2e-143 512.3 372 72.0
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 4.2e-143 511.9 363 70.2
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 5.5e-143 511.5 363 70.5
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 9.3e-143 510.8 363 70.2
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 9.3e-143 510.8 363 70.2
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 1.6e-142 510.0 365 72.1
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 2.7e-142 509.2 363 73.0
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 4.6e-142 508.4 362 71.3
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 6.1e-142 508.1 369 71.3
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 5.1e-141 505.0 365 70.7
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.1e-140 503.8 361 72.0
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 1.5e-140 503.4 365 72.3
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.5e-140 502.7 361 72.0
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 2.2e-139 499.6 365 70.7
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 6.3e-139 498.0 356 71.6
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 6.3e-139 498.0 364 70.9
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 1.4e-138 496.9 307 80.8
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.4e-138 496.9 364 72.0
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.5e-137 493.4 337 72.4
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.4e-137 492.3 366 69.7
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 3.4e-137 492.3 364 70.1
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 4.5e-137 491.9 363 68.3
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 3.8e-136 488.8 363 70.8
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 8.5e-136 487.6 365 68.5
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 9.4e-135 484.2 363 69.7
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.4e-133 480.3 366 66.9
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 5.1e-133 478.4 365 70.1
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.0e-132 476.5 394 62.7
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 2.5e-132 476.1 364 68.7
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 3.3e-132 475.7 365 69.0
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 5.7e-132 474.9 364 69.5
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 7.4e-132 474.6 366 69.4
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.3e-131 473.8 363 68.9
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 3.7e-131 472.2 365 68.5
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 6.3e-131 471.5 365 68.5
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 6.3e-131 471.5 363 68.0
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 5.9e-129 464.9 364 68.1
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.0e-128 464.2 363 67.2
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 2.2e-128 463.0 390 64.1
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 6.5e-128 461.5 371 66.8
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 7.2e-127 458.0 364 68.4
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.1e-126 454.9 362 66.6
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 6.7e-125 451.4 319 73.4
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 7.0e-122 441.4 333 69.7
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 3.6e-118 429.1 361 62.0
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.1e-116 424.1 302 72.8
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 9.7e-116 421.0 376 60.1
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 2.8e-115 419.5 277 75.8
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 3.7e-115 419.1 363 63.6
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 4.5e-113 412.1 359 60.2
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 8.5e-112 407.9 378 59.0
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 7.5e-108 394.8 367 58.6
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 1.7e-107 393.7 378 57.9
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.2e-107 393.3 340 60.9
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 8.5e-104 381.3 356 57.9
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 4.0e-101 372.5 384 51.6
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 9.8e-100 367.9 308 60.7
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 8.3e-99 364.8 244 75.8
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 3.6e-94 349.4 363 56.5
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 5.8e-84 315.5 277 61.0
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 4.9e-83 312.4 369 46.3
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 7.8e-81 305.1 359 46.8
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.6e-78 297.4 215 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.2e-73 281.2 408 43.4
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.2e-70 271.2 307 52.1
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.2e-70 271.2 213 63.4
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 1.4e-66 257.7 198 67.7
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.6e-65 254.2 196 66.8
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 4.6e-65 252.7 173 75.1
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 5.6e-63 245.7 167 76.6
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 2.0e-60 237.3 160 72.5
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 7.6e-60 235.3 308 49.7
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 1.9e-58 230.7 170 72.9
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 9.9e-52 208.4 199 53.8
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.2e-50 203.0 148 71.6
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 8.1e-46 188.7 122 79.5
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 1.8e-45 187.6 139 69.1
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.0e-44 184.1 122 77.9
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 8.4e-43 178.7 165 61.2
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 2.7e-41 173.7 250 43.6
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 2.0e-36 157.5 139 61.2
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.7e-35 154.5 122 70.5
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.8e-35 153.3 176 45.5
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.1e-34 151.8 141 60.3
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.2e-28 131.7 114 61.4
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.3e-22 109.4 72 76.4
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.1e-21 107.1 87 65.5
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 9.1e-21 105.5 388 26.3
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 5.0e-19 99.8 72 72.2
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.8e-16 91.3 77 61.0
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-11 73.9 140 33.6
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 8.2e-06 55.8 147 29.9


User provided reference genes

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