Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2913.3 1488 100.0
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2908.2 1488 99.7
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2899.4 1488 99.6
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2876.3 1488 98.5
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2850.5 1483 98.2
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2767.3 1488 94.5
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2536.5 1492 86.0
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2444.1 1491 83.9
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2430.6 1490 81.8
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2379.4 1498 79.9
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2369.7 1490 80.3
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2357.0 1500 78.5
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2354.3 1498 78.8
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2352.8 1497 79.1
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2350.9 1498 79.0
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2344.3 1498 78.7
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2342.0 1497 78.6
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2338.5 1498 79.0
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2338.5 1498 78.9
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2336.6 1493 78.3
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2336.6 1499 78.2
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2330.8 1492 78.1
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2330.1 1492 78.3
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2329.3 1496 77.5
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2326.6 1494 78.9
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2322.4 1487 78.3
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2315.4 1492 77.8
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2309.6 1498 77.2
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2309.3 1498 77.9
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2302.7 1492 77.3
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2301.6 1493 76.9
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2300.4 1492 77.2
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2292.7 1492 77.3
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2292.7 1493 77.0
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2275.4 1533 75.0
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2272.3 1481 77.0
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2263.8 1484 76.0
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2262.6 1494 76.3
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2260.0 1498 76.1
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2258.4 1490 75.4
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2249.9 1495 76.1
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2234.5 1555 73.3
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2226.1 1449 77.8
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2213.7 1495 73.8
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2202.6 1489 74.0
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2201.8 1489 74.1
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2197.5 1530 72.5
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2184.8 1485 73.9
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2179.4 1569 71.1
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2176.0 1497 73.6
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2174.1 1490 73.7
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2169.8 1485 73.5
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2167.5 1491 73.4
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2166.7 1498 73.5
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2166.0 1496 73.3
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2165.6 1492 73.3
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2164.4 1482 73.5
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2161.3 1496 73.2
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2154.4 1502 73.6
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2132.5 1495 72.8
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2125.5 1492 72.5
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2125.1 1497 71.7
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2114.3 1493 71.5
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2108.2 1492 71.6
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2097.8 1497 70.7
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2097.8 1553 69.9
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2097.0 1482 71.5
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2091.6 1493 71.5
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2087.8 1488 72.0
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2085.8 1492 71.5
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2072.4 1493 71.2
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2067.7 1301 80.9
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2064.3 1486 71.0
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2063.9 1486 71.0
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2061.2 1490 70.7
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2060.8 1496 70.8
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2060.8 1488 71.0
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2059.3 1480 70.6
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2056.2 1496 70.5
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2051.2 1487 70.4
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2048.5 1487 70.7
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2046.9 1306 79.9
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2042.7 1495 70.4
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2041.2 1497 70.1
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2040.8 1496 70.1
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2036.9 1500 70.2
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2033.1 1496 70.2
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2028.8 1490 70.3
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2024.6 1587 68.1
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2023.4 1492 69.2
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2022.3 1475 70.0
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2015.4 1495 68.6
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2013.0 1574 66.6
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2000.3 1309 78.2
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1978.8 1463 69.9
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1976.4 1277 77.4
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1930.6 1506 66.5
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1886.3 1391 71.2
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1861.7 1303 73.5
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1851.6 1485 64.2
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1840.1 1225 75.6
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1828.9 1473 62.8
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1817.4 1366 69.2
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1783.8 1443 65.3
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1783.5 1665 58.3
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1742.6 1434 61.5
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1597.0 1512 55.8
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1596.3 1536 55.7
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1590.5 988 79.3
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1473.8 1087 71.8
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1466.4 1417 57.8
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1384.8 1370 56.7
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1369.0 1204 58.3
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1329.3 1294 54.1
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1322.8 1372 55.0
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1165.2 746 78.4
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1135.2 739 79.6
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1116.7 1282 51.7
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.1e-303 1047.3 848 63.2
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.7e-262 909.8 782 62.9
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.5e-252 877.5 710 64.1
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 1.3e-248 864.4 924 54.7
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.4e-231 807.7 579 68.9
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.1e-207 728.4 597 64.0
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 1.1e-207 728.4 606 61.6
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 2.8e-187 660.6 892 44.4
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 3.2e-183 647.1 479 74.1
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.4e-178 631.7 363 79.9
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.0e-173 615.5 442 75.6
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 2.3e-168 597.8 742 46.0
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.2e-158 563.1 469 63.1
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 2.6e-148 531.2 581 54.6
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.2e-123 448.4 774 39.5
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 6.5e-99 367.1 218 86.2
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.2e-94 352.1 351 56.4
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 8.2e-94 350.1 1763 24.6
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 4.5e-92 344.4 1591 26.3
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.5e-90 337.4 445 44.7
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 4.1e-85 321.2 1609 24.9
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 7.2e-82 310.5 153 96.1
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.4e-80 306.2 224 68.3
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.5e-74 286.2 230 63.5
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 4.0e-72 278.1 238 63.0
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 4.8e-70 271.2 271 56.8
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.9e-66 259.2 195 66.7
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 4.2e-66 258.1 152 75.0
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 5.8e-47 194.5 102 86.3
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 2.7e-44 185.7 190 54.2
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.9e-42 179.5 190 55.3
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 3.1e-40 172.2 223 52.0
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 3.7e-38 165.2 159 54.1
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 3.6e-33 148.7 129 58.1
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.8e-32 146.4 343 33.2
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 4.0e-32 145.2 121 63.6
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 2.3e-27 129.4 103 65.0
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 3.9e-27 128.6 123 55.3
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 4.3e-26 125.2 747 24.1
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 4.3e-26 125.2 101 67.3
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 3.6e-25 122.1 56 92.9
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.7e-22 113.2 65 76.9
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 8.4e-22 110.9 67 77.6
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.3e-18 99.0 183 38.3
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.2e-15 90.5 61 80.3
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.3e-14 87.0 70 58.6
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.3e-11 76.3 53 62.3
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.3e-11 76.3 53 62.3
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 3.3e-10 72.4 34 94.1
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 3.4e-07 62.4 40 75.0
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 1.7e-06 60.1 151 32.5
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 2.9e-06 59.3 43 60.5


User provided reference genes

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