Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2150 Fragaria x ananassa HOM05D004601 ORTHO05D005806 0.0e+00 1904.0 951 100.0
FvH4_4g07160 Fragaria vesca HOM05D004601 ORTHO05D005806 0.0e+00 1175.6 658 90.9
FAN17G2239 Fragaria x ananassa HOM05D004601 ORTHO05D005806 0.0e+00 1144.4 658 89.2
RcHm_v2.0_Chr4g0399311 Rosa chinensis HOM05D004601 ORTHO05D005806 5.5e-301 1037.7 659 82.1
FAN12G1367 Fragaria x ananassa HOM05D004601 ORTHO05D005806 3.8e-294 1015.0 658 80.9
MD16G1247900 Malus domestica HOM05D004601 ORTHO05D005806 7.7e-263 911.0 661 71.1
Prupe.1G074600 Prunus persica HOM05D004601 ORTHO05D005806 1.3e-257 893.6 662 69.9
Cfa013456 Carpinus fangiana HOM05D004601 ORTHO05D005806 6.4e-225 785.0 663 64.1
CiPaw.08G032200 Carya illinoinensis HOM05D004601 ORTHO05D005806 2.3e-219 766.5 660 62.9
GSVIVG01029314001 Vitis vinifera HOM05D004601 ORTHO05D005806 1.1e-216 757.7 661 60.8
Potri.018G141900 Populus trichocarpa HOM05D004601 ORTHO05D005806 5.4e-216 755.4 629 62.5
CSS0021444 Camellia sinensis var. sinensis HOM05D004601 ORTHO05D005806 1.9e-213 746.9 665 58.6
Ciclev10007283m.g Citrus clementina HOM05D004601 ORTHO05D005806 5.6e-213 745.3 656 59.9
Sabra18G0116000 Salix brachista HOM05D004601 ORTHO05D005806 2.8e-212 743.0 638 61.3
Dinv25455 Davidia involucrata HOM05D004601 ORTHO05D005806 8.9e-211 738.0 685 58.7
Thecc.09G186600 Theobroma cacao HOM05D004601 ORTHO05D005806 3.0e-206 723.0 660 57.4
CANSAT11G0507 Cannabis sativa HOM05D004601 ORTHO05D005806 4.0e-203 712.6 614 62.5
Gohir.A13G208300 Gossypium hirsutum HOM05D004601 ORTHO05D005806 4.0e-203 712.6 664 55.1
Gorai.013G243100 Gossypium raimondii HOM05D004601 ORTHO05D005806 2.6e-202 709.9 664 55.0
Actinidia02499 Actinidia chinensis HOM05D004601 ORTHO05D005806 3.4e-202 709.5 660 57.0
Glyma.15G166700 Glycine max HOM05D004601 ORTHO05D005806 1.1e-200 704.5 653 57.9
Duzib150G1331 Durio zibethinus HOM05D004601 ORTHO05D005806 1.2e-199 701.0 672 55.1
Ca_02111_v3 Cicer arietinum L. HOM05D004601 ORTHO05D005806 5.6e-197 692.2 653 55.7
Cpa.g.sc95.10 Carica papaya HOM05D004601 ORTHO05D005806 3.1e-195 686.4 597 59.6
Nn8g40736 Nelumbo nucifera HOM05D004601 ORTHO05D005806 4.0e-195 686.0 643 56.9
TWI63G1718 Tripterygium wilfordii HOM05D004601 ORTHO05D005806 2.0e-194 683.7 630 57.0
MELO3C003972.2 Cucumis melo HOM05D004601 ORTHO05D005806 3.4e-194 682.9 618 58.9
TPR.G7576 Trifolium pratense HOM05D004601 ORTHO05D000001 3.4e-194 682.9 653 56.2
Migut.J00793 Erythranthe guttata HOM05D004601 ORTHO05D005806 5.8e-194 682.2 626 58.5
Lj6g0004756 Lotus japonicus HOM05D004601 ORTHO05D005806 1.3e-193 681.0 657 56.5
Gohir.D13G212700 Gossypium hirsutum HOM05D004601 ORTHO05D005806 3.8e-193 679.5 561 59.9
PSO170G3696 Papaver somniferum HOM05D004601 ORTHO05D005806 6.4e-193 678.7 649 54.9
Sed0026596 Sechium edule HOM05D004601 ORTHO05D005806 8.4e-193 678.3 605 59.3
CsaV3_2G008760 Cucumis sativus L. HOM05D004601 ORTHO05D005806 2.4e-192 676.8 617 58.2
Psat1g144400 Pisum sativum HOM05D004601 ORTHO05D005806 4.2e-192 676.0 653 54.7
Phvul.009G235800 Phaseolus vulgaris HOM05D004601 ORTHO05D005806 2.1e-191 673.7 655 56.2
VMungo1309G1314 Vigna mungo HOM05D004601 ORTHO05D005806 6.0e-191 672.2 655 55.3
Lalb_Chr08g0231931 Lupinus albus HOM05D004601 ORTHO05D005806 1.3e-190 671.0 651 55.8
Cc06_g20790 Coffea canephora HOM05D004601 ORTHO05D005806 5.6e-189 665.6 655 55.9
ECA236G0938 Erigeron canadensis HOM05D004601 ORTHO05D005806 1.3e-188 664.5 632 54.9
PSO063G2966 Papaver somniferum HOM05D004601 ORTHO05D005806 3.7e-188 662.9 649 53.6
arahy.Tifrunner.gnm1.ann1.BQ8TF8 Arachis hypogaea HOM05D004601 ORTHO05D005806 3.1e-187 659.8 644 55.3
HanXRQChr05g0141031 Helianthus annuus HOM05D004601 ORTHO05D005806 3.4e-186 656.4 624 55.1
Eucgr.C00108 Eucalyptus grandis HOM05D004601 ORTHO05D005806 4.2e-184 649.4 642 55.0
MSTRG.5939 Avicennia marina HOM05D004601 ORTHO05D005806 3.5e-183 646.4 621 55.1
Aqoxy7G02847 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 4.6e-183 646.0 653 53.9
PGR142G4125 Punica granatum HOM05D004601 ORTHO05D005806 1.8e-182 644.0 663 54.1
PGR142G2375 Punica granatum HOM05D004601 ORTHO05D005806 8.7e-182 641.7 663 54.0
EL10Ac4g10170 Beta vulgaris HOM05D004601 ORTHO05D005806 3.1e-179 633.3 651 52.2
Sc16g0011160 Simmondsia chinensis HOM05D004601 ORTHO05D005806 6.9e-179 632.1 648 53.7
THA.LOC104817773 Tarenaya hassleriana HOM05D004601 ORTHO05D005806 1.0e-177 628.2 605 54.7
Manes.14G159112 Manihot esculenta HOM05D004601 ORTHO05D005806 1.3e-177 627.9 456 67.3
CAN.G285.4 Capsicum annuum HOM05D004601 ORTHO05D005806 6.5e-177 625.5 652 50.3
A10p14520 Brassica napus HOM05D004601 ORTHO05D005806 1.2e-175 621.3 508 60.6
AL8G33090 Arabidopsis lyrata HOM05D004601 ORTHO05D005806 2.7e-175 620.2 710 48.7
AT5G57160 Arabidopsis thaliana HOM05D004601 ORTHO05D005806 4.6e-175 619.4 637 52.1
BolC9t57749H Brassica oleracea HOM05D004601 ORTHO05D005806 1.1e-173 614.8 707 49.2
C09p48970 Brassica napus HOM05D004601 ORTHO05D005806 1.5e-173 614.4 700 49.7
Carub.0008s1767 Capsella rubella HOM05D004601 ORTHO05D005806 2.5e-173 613.6 640 51.4
CARHR270950 Cardamine hirsuta HOM05D004601 ORTHO05D005806 2.5e-173 613.6 643 50.9
Hma1.2p1_0235F.1_g098690 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 2.5e-173 613.6 612 55.6
BcaC04g19995 Brassica carinata HOM05D004601 ORTHO05D005806 9.7e-173 611.7 700 49.6
BraA10t43541Z Brassica rapa HOM05D004601 ORTHO05D005806 1.6e-172 610.9 702 50.1
AUR62039835 Chenopodium quinoa HOM05D004601 ORTHO05D005806 2.2e-172 610.5 590 54.7
Rhsim03G0267200 Rhododendron simsii HOM05D004601 ORTHO05D005806 2.2e-172 610.5 645 51.5
Ah.06g194430 Amaranthus hybridus HOM05D004601 ORTHO05D005806 5.3e-171 605.9 677 49.9
AUR62000175 Chenopodium quinoa HOM05D004601 ORTHO05D005806 9.0e-171 605.1 611 53.4
Sp6g18890 Schrenkiella parvula HOM05D004601 ORTHO05D005806 9.0e-171 605.1 637 51.3
Medtr2g038030 Medicago truncatula HOM05D004601 ORTHO05D005806 3.4e-170 603.2 467 62.1
Thhalv10012474m.g Eutrema salsugineum HOM05D004601 ORTHO05D005806 5.9e-170 602.4 702 48.1
MBI16_g47869_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 1.9e-168 597.4 475 62.9
vmacro05994 Vaccinium macrocarpon HOM05D004601 ORTHO05D005806 4.6e-167 592.8 655 50.5
Aa31LG3G13060 Aethionema arabicum HOM05D004601 ORTHO05D005806 5.3e-163 579.3 601 51.9
ClCG11G011720 Citrullus lanatus HOM05D004601 ORTHO05D005806 1.2e-162 578.2 637 52.4
CDE07G0894 Ceratophyllum demersum HOM05D004601 ORTHO05D005806 2.4e-155 553.9 630 48.6
Zm00001eb071490 Zea mays HOM05D004601 ORTHO05D005806 1.5e-154 551.2 597 47.4
HPP92_021964 Vanilla planifolia HOM05D004601 ORTHO05D005806 5.0e-153 546.2 646 46.1
Sopen07g006920 Solanum pennellii HOM05D004601 ORTHO05D005806 9.4e-152 542.0 592 48.6
COL.COLO4_06398 Corchorus olitorius HOM05D004601 ORTHO05D005806 1.5e-149 534.6 664 46.5
TAR383G0412 Trochodendron aralioides HOM05D004601 ORTHO05D005806 2.9e-145 520.4 360 70.8
Hma1.2p1_0235F.1_g098680 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 3.7e-140 503.4 360 70.8
ATR0626G236 Amborella trichopoda HOM05D004601 ORTHO05D005806 1.2e-135 488.4 606 46.0
Lsat_1_v5_gn_8_69120 Lactuca sativa HOM05D004601 ORTHO05D005806 2.1e-135 487.6 533 50.7
BcaC04g19998 Brassica carinata HOM05D004601 ORTHO05D005806 1.5e-133 481.5 460 53.7
DCAR_020147 Daucus carota HOM05D004601 ORTHO05D005806 1.3e-129 468.4 477 52.0
Lj7A622G14 Lonicera japonica HOM05D004601 ORTHO05D005806 6.3e-124 449.5 504 50.4
SGA_v2.0_scaffold112G31593 Striga asiatica HOM05D004601 ORTHO05D005806 1.2e-122 445.3 622 43.4
Pp3c14_5920 Physcomitrium patens HOM05D004601 ORTHO05D005806 6.6e-121 439.5 606 42.2
BcaB08g35989 Brassica carinata HOM05D004601 ORTHO05D005806 2.5e-120 437.6 676 42.3
Mapoly0001s0137 Marchantia polymorpha HOM05D004601 ORTHO05D005806 1.2e-117 428.7 500 44.2
Atru.chr7.956 Acer truncatum HOM05D004601 ORTHO05D005806 3.4e-117 427.2 658 40.4
MBI16_g10345_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 3.7e-116 423.7 685 39.3
Glyma.09G060132 Glycine max HOM05D004601 ORTHO05D005806 8.6e-113 412.5 338 60.4
SHI03064 Sapria himalayana HOM05D004601 ORTHO05D005806 1.8e-110 404.8 477 48.0
Nitab4.5_0000056g0060 Nicotiana tabacum HOM05D004601 ORTHO05D005806 2.6e-109 401.0 522 43.7
AagrBONN_evm.TU.Sc2ySwM_228.1820 Anthoceros agrestis HOM05D004601 ORTHO05D005806 6.4e-108 396.4 414 49.5
Solyc07g018000.3 Solanum lycopersicum HOM05D004601 ORTHO05D005806 7.0e-107 392.9 469 45.2
SMO144G0133 Selaginella moellendorffii HOM05D004601 ORTHO05D005806 1.5e-101 375.2 545 39.6
arahy.Tifrunner.gnm1.ann1.LL4FRQ Arachis hypogaea HOM05D004601 ORTHO05D005806 1.7e-100 371.7 437 48.7
Peaxi162Scf00231g01115 Petunia axillaris HOM05D004601 ORTHO05D005806 2.7e-98 364.4 458 44.5
SalBow6G1386 Salvia bowleyana HOM05D004601 ORTHO05D005806 5.2e-94 350.1 432 45.1
Aqoxy295s002 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 8.1e-87 326.2 301 56.5
arahy.Tifrunner.gnm1.ann1.8TE3EA Arachis hypogaea HOM05D004601 ORTHO05D005806 5.8e-85 320.1 248 66.9
Oeu019558.1 Olea europaea HOM05D004601 ORTHO05D005806 5.8e-85 320.1 248 67.3
FAN26G1365 Fragaria x ananassa HOM05D015739 ORTHO05D025347 8.4e-76 289.7 249 68.7
SEGI_28566 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 7.1e-75 286.6 242 56.6
FvH4_4g00220 Fragaria vesca HOM05D015739 ORTHO05D025347 8.7e-73 279.6 174 82.8
Aqoxy295s003 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 6.2e-71 273.5 191 69.1
AagrBONN_evm.TU.Sc2ySwM_228.3225 Anthoceros agrestis HOM05D004601 ORTHO05D005806 7.6e-69 266.5 626 28.3
FAN07G1924 Fragaria x ananassa HOM05D015739 ORTHO05D025347 5.5e-67 260.4 159 81.8
Psat5g051520 Pisum sativum HOM05D004601 ORTHO05D005806 1.5e-56 225.7 169 64.5
ECA236G2032 Erigeron canadensis HOM05D004601 ORTHO05D005806 3.8e-52 211.1 314 40.8
Rhsim01G0115200 Rhododendron simsii HOM05D004601 ORTHO05D005806 6.5e-44 183.7 509 30.5
Solyc07g017990.3 Solanum lycopersicum HOM05D004601 ORTHO05D005806 1.9e-43 182.2 101 81.2
SEGI_29133 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 2.6e-37 161.8 105 69.5
FAN17G0925 Fragaria x ananassa HOM05D015739 ORTHO05D005806 1.0e-36 159.8 92 89.1
PRCOL_00001076 Prasinoderma coloniale HOM05D004601 ORTHO05D005806 1.1e-35 156.4 399 27.3
FAN07G2319 Fragaria x ananassa HOM05D015739 ORTHO05D025347 3.6e-34 151.4 84 90.5
Rhsim01G0114900 Rhododendron simsii HOM05D004601 ORTHO05D005806 3.6e-34 151.4 115 67.8
RhsimUnG0137600 Rhododendron simsii HOM05D004601 ORTHO05D005806 2.0e-32 145.6 330 33.6
Cre10.g433550 Chlamydomonas reinhardtii HOM05D004601 ORTHO05D005806 2.5e-27 128.6 200 37.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 3.0e-25 121.7 71 74.6
Peaxi162Scf00231g01116 Petunia axillaris HOM05D004601 ORTHO05D005806 1.5e-24 119.4 92 62.0
Haze_22030 Corylus avellana HOM05D004601 ORTHO05D005806 6.5e-20 104.0 274 32.8
Cfa023642 Carpinus fangiana HOM05D004601 ORTHO05D005806 1.9e-19 102.4 399 26.3
SalBow7G2616 Salvia bowleyana HOM05D005568 ORTHO05D006940 5.2e-17 94.4 64 64.1
CBR_g50206 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-13 81.3 276 24.3
SEGI_06603 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 5.9e-13 80.9 54 61.1
FAN26G1045 Fragaria x ananassa HOM05D015739 ORTHO05D025347 2.9e-12 78.6 38 92.1
vmacro22649 Vaccinium macrocarpon HOM05D007372 ORTHO05D009318 2.9e-12 78.6 45 75.6
vmacro22532 Vaccinium macrocarpon HOM05D007372 ORTHO05D009318 5.0e-12 77.8 42 81.0
MD11G1147600 Malus domestica HOM05D001934 ORTHO05D002139 8.6e-12 77.0 201 30.8
arahy.Tifrunner.gnm1.ann1.E6T32I Arachis hypogaea HOM05D001934 ORTHO05D002139 1.5e-11 76.3 193 29.5
Cre07.g325716 Chlamydomonas reinhardtii HOM05D001934 ORTHO05D002139 2.5e-11 75.5 99 35.4
MD03G1127000 Malus domestica HOM05D001934 ORTHO05D002139 7.2e-11 73.9 185 30.3
MCO11G338 Micromonas commoda HOM05D001934 ORTHO05D002139 2.1e-10 72.4 100 34.0
Lj7A622G13 Lonicera japonica HOM05D004601 ORTHO05D005806 3.6e-10 71.6 77 48.1
Duzib150G0588 Durio zibethinus HOM05D001934 ORTHO05D002139 4.7e-10 71.2 200 29.5
arahy.Tifrunner.gnm1.ann1.489L6Z Arachis hypogaea HOM05D001934 ORTHO05D002139 1.0e-09 70.1 208 28.4
arahy.Tifrunner.gnm1.ann1.CF9NWX Arachis hypogaea HOM05D001934 ORTHO05D002139 1.0e-09 70.1 208 28.4
arahy.Tifrunner.gnm1.ann1.Z70S0B Arachis hypogaea HOM05D001934 ORTHO05D002139 1.4e-09 69.7 92 40.2
PRCOL_00004276 Prasinoderma coloniale HOM05D001934 ORTHO05D002139 2.0e-08 65.9 103 34.0
AagrBONN_evm.TU.Sc2ySwM_362.157 Anthoceros agrestis HOM05D001934 ORTHO05D002139 4.4e-08 64.7 98 35.7
SHI06224 Sapria himalayana HOM05D001934 ORTHO05D002139 5.7e-08 64.3 99 34.3
VMungo1383G1252 Vigna mungo HOM05D001934 ORTHO05D002139 5.7e-08 64.3 184 28.8
Ca_08099_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 9.8e-08 63.5 184 28.3
Medtr7g082860 Medicago truncatula HOM05D001934 ORTHO05D002139 2.2e-07 62.4 88 38.6
Glyma.18G292900 Glycine max HOM05D001934 ORTHO05D002139 2.8e-07 62.0 113 33.6
SEGI_03765 Sequoiadendron giganteum HOM05D004601 ORTHO05D387201 3.7e-07 61.6 75 36.0
EL10Ac8g19431 Beta vulgaris HOM05D001934 ORTHO05D002139 4.9e-07 61.2 129 34.9
Nitab4.5_0006199g0020 Nicotiana tabacum HOM05D004601 ORTHO05D005806 8.3e-07 60.5 180 29.4
PRCOL_00006882 Prasinoderma coloniale HOM05D001934 ORTHO05D002139 8.3e-07 60.5 113 31.0
MCO09G458 Micromonas commoda HOM05D001934 ORTHO05D002139 1.1e-06 60.1 90 40.0
arahy.Tifrunner.gnm1.ann1.Q72QFH Arachis hypogaea HOM05D001934 ORTHO05D002139 1.4e-06 59.7 88 37.5
arahy.Tifrunner.gnm1.ann1.TBH1BX Arachis hypogaea HOM05D001934 ORTHO05D002139 1.4e-06 59.7 88 37.5
AagrBONN_evm.TU.Sc2ySwM_340.41 Anthoceros agrestis HOM05D001934 ORTHO05D002139 2.4e-06 58.9 167 29.3
ECA232G4925 Erigeron canadensis HOM05D001934 ORTHO05D002139 3.2e-06 58.5 88 37.5
AagrBONN_evm.TU.Sc2ySwM_368.3079 Anthoceros agrestis HOM05D001934 ORTHO05D002139 7.0e-06 57.4 84 38.1


User provided reference genes

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