Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 0.0e+00 1376.7 1041 100.0
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 0.0e+00 1288.5 1041 89.0
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 0.0e+00 1286.2 1041 89.0
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 0.0e+00 1277.7 1041 87.7
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 0.0e+00 1268.4 1041 88.0
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 0.0e+00 1093.2 1047 79.8
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.4e-236 823.9 1066 68.0
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 2.7e-216 756.5 1068 62.9
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 1.0e-204 718.0 650 72.2
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 8.6e-199 698.4 573 77.3
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.1e-198 698.0 676 70.0
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 1.8e-196 690.6 582 75.9
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 2.3e-196 690.3 686 68.1
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 3.1e-196 689.9 712 66.9
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.2e-195 688.0 490 80.6
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.2e-195 688.0 690 67.0
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 4.4e-195 686.0 490 80.6
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 4.4e-195 686.0 645 70.5
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 5.8e-195 685.6 675 66.7
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 9.8e-195 684.9 647 68.8
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 4.1e-193 679.5 646 70.3
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 2.0e-192 677.2 661 68.4
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 2.0e-192 677.2 670 67.5
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 7.8e-192 675.2 673 68.6
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 1.3e-191 674.5 627 72.6
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 3.0e-191 673.3 624 70.8
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 3.9e-191 672.9 668 68.0
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 8.6e-191 671.8 666 68.8
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 1.1e-190 671.4 599 74.1
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 1.1e-188 664.8 622 68.3
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.4e-188 664.5 601 69.6
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 3.1e-188 663.3 573 69.8
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-187 661.4 622 70.9
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.0e-187 660.6 622 68.5
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 4.4e-187 659.4 702 63.8
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 7.5e-187 658.7 666 69.4
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 2.9e-186 656.8 665 65.6
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 3.7e-186 656.4 663 65.2
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.1e-185 654.8 688 62.5
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 3.2e-185 653.3 568 72.4
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.5e-184 649.8 660 65.8
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 5.1e-183 646.0 616 68.2
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 5.6e-182 642.5 540 77.0
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 5.6e-182 642.5 490 78.4
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.4e-180 637.9 617 65.8
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 2.3e-180 637.1 666 65.3
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 2.6e-179 633.6 616 70.9
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.9e-178 630.2 644 64.8
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 3.7e-178 629.8 634 65.1
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.7e-175 620.9 670 65.1
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 7.3e-174 615.5 625 68.8
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.8e-173 613.6 690 63.5
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.4e-172 611.3 490 75.1
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.4e-172 610.5 649 65.5
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 2.4e-172 610.5 630 61.0
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 3.1e-172 610.1 649 65.2
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.5e-171 607.8 609 70.3
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 2.0e-171 607.4 491 74.5
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 9.9e-171 605.1 685 58.5
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.9e-169 600.9 703 58.5
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 7.8e-168 595.5 678 57.1
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 3.9e-167 593.2 627 69.7
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 6.6e-167 592.4 583 64.0
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 1.5e-166 591.3 627 69.7
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.5e-166 590.5 489 72.2
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 2.5e-166 590.5 624 62.5
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.5e-166 590.5 646 65.3
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 4.3e-166 589.7 529 70.9
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 7.3e-166 589.0 626 63.4
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 9.6e-166 588.6 653 61.6
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 2.8e-165 587.0 603 64.0
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 9.9e-163 578.6 575 62.4
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.7e-162 577.8 607 65.2
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 1.2e-160 571.6 674 57.6
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 3.5e-160 570.1 521 64.7
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 7.9e-160 568.9 610 62.1
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.3e-159 568.2 689 60.5
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.7e-159 567.8 642 59.3
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 8.7e-159 565.5 521 64.3
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.1e-158 565.1 640 61.4
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 2.5e-158 563.9 617 63.7
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.3e-158 563.1 626 62.6
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 5.6e-158 562.8 667 60.6
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 7.4e-158 562.4 629 61.2
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.3e-157 561.6 667 56.5
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 3.6e-157 560.1 644 61.8
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 8.1e-157 558.9 617 59.5
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 3.4e-155 553.5 676 58.0
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 5.8e-155 552.7 608 57.4
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 6.4e-154 549.3 620 59.7
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 6.4e-154 549.3 620 59.7
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.9e-153 547.7 620 59.5
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 9.3e-153 545.4 650 62.2
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.6e-152 544.7 603 63.0
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 2.3e-151 540.8 715 58.0
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.3e-149 535.0 597 59.0
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.1e-148 531.9 600 64.2
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 2.4e-148 530.8 642 59.8
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 5.3e-148 529.6 642 59.7
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 6.9e-140 502.7 491 61.3
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 1.5e-126 458.4 477 67.9
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 3.3e-118 430.6 509 64.2
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 2.6e-110 404.4 497 53.3
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 7.7e-107 392.9 495 54.1
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 4.2e-105 387.1 601 52.9
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 3.1e-100 370.9 299 66.6
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.5e-99 367.1 333 66.1
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.6e-88 332.0 532 46.6
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 8.0e-88 329.7 260 67.7
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 4.4e-86 323.9 501 49.1
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 9.2e-76 289.7 502 46.2
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 9.5e-73 279.6 502 45.4
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 5.8e-70 270.4 442 45.2
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 2.4e-68 265.0 187 72.2
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 4.6e-67 260.8 285 58.6
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.0e-63 247.7 288 64.6
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 6.8e-63 246.9 330 61.2
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 1.5e-62 245.7 299 49.5
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 7.6e-62 243.4 330 63.6
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 2.3e-58 231.9 275 58.2
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 2.3e-58 231.9 179 68.7
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 3.1e-55 221.5 198 64.6
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.5e-25 122.1 144 56.2
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 2.2e-21 109.0 89 61.8
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 1.4e-20 106.3 85 63.5
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 4.2e-20 104.8 71 74.6
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 3.7e-16 91.7 425 29.2
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 4.8e-16 91.3 67 67.2
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 1.1e-15 90.1 100 54.0
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 1.4e-15 89.7 89 64.0
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 3.4e-14 85.1 94 54.3
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 2.9e-13 82.0 100 54.0
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 6.5e-13 80.9 66 71.2
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 3.2e-12 78.6 459 27.5
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 6.7e-10 70.9 71 70.4
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 4.1e-07 61.6 47 68.1
A01p24780 Brassica napus HOM05D001023 ORTHO05D000912 6.9e-07 60.8 91 38.5
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 1.2e-06 60.1 101 48.5
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 1.5e-06 59.7 92 39.1
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 1.5e-06 59.7 92 39.1
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.5e-06 59.7 103 35.9
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 1.5e-06 59.7 103 35.9
ECA232G0760 Erigeron canadensis HOM05D001023 ORTHO05D000912 2.0e-06 59.3 91 41.8
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 2.0e-06 59.3 103 35.0
Gohir.A11G291200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 2.0e-06 59.3 103 35.9
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 2.0e-06 59.3 103 35.0
Gohir.D11G301400 Gossypium hirsutum HOM05D001023 ORTHO05D000912 2.0e-06 59.3 103 35.9
Gorai.007G335300 Gossypium raimondii HOM05D001023 ORTHO05D000912 2.0e-06 59.3 103 35.9
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 2.0e-06 59.3 103 35.0
Lsat_1_v5_gn_9_50120 Lactuca sativa HOM05D001023 ORTHO05D000912 2.0e-06 59.3 91 40.7
BcaB04g19823 Brassica carinata HOM05D001023 ORTHO05D000912 2.6e-06 58.9 96 37.5
BcaC04g23542 Brassica carinata HOM05D001023 ORTHO05D000912 2.6e-06 58.9 84 41.7
C09p07240 Brassica napus HOM05D001023 ORTHO05D000912 2.6e-06 58.9 84 41.7
CDE11G0185 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 2.6e-06 58.9 91 39.6
HanXRQChr05g0139321 Helianthus annuus HOM05D001023 ORTHO05D000912 2.6e-06 58.9 104 36.5
TWI81G0940 Tripterygium wilfordii HOM05D001023 ORTHO05D000912 2.6e-06 58.9 103 36.9
THA.LOC104810411 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 3.4e-06 58.5 96 35.4
Aa31LG10G1640 Aethionema arabicum HOM05D001023 ORTHO05D000912 4.5e-06 58.2 103 35.9
Cpa.g.sc3.149 Carica papaya HOM05D001023 ORTHO05D000912 4.5e-06 58.2 103 37.9
CDE02G1390 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 4.5e-06 58.2 91 39.6
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 4.5e-06 58.2 104 36.5
Solyc06g053300.3 Solanum lycopersicum HOM05D001023 ORTHO05D000912 4.5e-06 58.2 91 39.6
Sopen06g018360 Solanum pennellii HOM05D001023 ORTHO05D000912 4.5e-06 58.2 91 39.6
BcaC09g49946 Brassica carinata HOM05D001023 ORTHO05D000912 5.9e-06 57.8 103 33.0
BolC1t03026H Brassica oleracea HOM05D001023 ORTHO05D000912 5.9e-06 57.8 103 33.0
Lalb_Chr23g0271881 Lupinus albus HOM05D001023 ORTHO05D000912 5.9e-06 57.8 98 37.8
Phvul.009G046200 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 5.9e-06 57.8 89 39.3
BcaB05g23100 Brassica carinata HOM05D001023 ORTHO05D000912 7.7e-06 57.4 91 37.4
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 7.7e-06 57.4 295 32.2
Potri.001G448800 Populus trichocarpa HOM05D001023 ORTHO05D000912 7.7e-06 57.4 103 36.9
Sabra16G0302900 Salix brachista HOM05D001023 ORTHO05D000912 7.7e-06 57.4 103 36.9


User provided reference genes

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