Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 0.0e+00 1484.5 744 100.0
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 0.0e+00 1441.8 744 97.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 0.0e+00 1437.9 744 97.2
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 0.0e+00 1408.3 744 95.8
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 0.0e+00 1322.8 707 95.8
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 4.7e-276 954.5 541 87.1
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 6.2e-276 954.1 541 86.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 4.5e-258 894.8 720 65.7
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.1e-251 873.6 714 64.3
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.7e-225 786.6 745 58.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 5.3e-211 738.4 771 54.9
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 5.3e-211 738.4 771 54.9
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.4e-203 713.8 719 53.0
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 5.9e-202 708.4 892 48.4
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.5e-200 703.0 763 52.8
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.1e-190 669.5 776 50.6
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.5e-189 667.2 721 53.1
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 5.8e-189 665.2 725 53.0
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 4.9e-188 662.1 778 50.1
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 2.4e-187 659.8 710 50.1
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 5.4e-187 658.7 736 50.8
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.3e-185 653.3 739 49.8
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 5.6e-184 648.7 748 50.0
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.2e-183 647.5 727 49.8
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 5.2e-182 642.1 593 58.5
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.2e-181 641.0 766 48.8
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 1.5e-181 640.6 735 50.2
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.7e-180 637.1 736 49.2
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.2e-180 636.7 731 50.1
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 4.6e-178 629.0 736 49.5
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 3.0e-177 626.3 763 48.2
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 3.9e-177 625.9 766 47.8
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 4.3e-176 622.5 735 49.1
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.1e-175 620.2 725 48.1
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.1e-174 616.3 729 48.8
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 5.2e-174 615.5 728 50.5
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.4e-171 607.4 760 48.2
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.4e-171 607.4 760 48.2
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 3.2e-171 606.3 751 47.8
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.1e-170 603.6 751 47.7
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 7.8e-170 601.7 707 49.5
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 3.9e-169 599.4 740 46.9
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.9e-168 597.0 732 48.8
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 4.7e-167 592.4 751 46.9
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 7.6e-165 585.1 713 48.0
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 9.9e-165 584.7 714 48.0
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.9e-163 580.5 761 47.3
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.9e-163 580.5 711 48.1
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.9e-163 580.5 713 48.0
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.2e-163 579.7 730 47.0
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.6e-162 577.4 736 46.1
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 4.6e-162 575.9 715 48.0
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.9e-160 570.5 618 52.6
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 2.8e-159 566.6 709 47.7
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.4e-158 564.3 731 46.1
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 4.4e-157 559.3 731 46.2
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 5.8e-157 558.9 707 47.5
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 3.8e-156 556.2 718 45.8
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 4.9e-156 555.8 704 46.6
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 3.2e-155 553.1 705 46.1
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 5.4e-155 552.4 698 47.3
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.2e-154 551.2 708 45.9
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.6e-154 549.3 705 46.5
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 6.0e-154 548.9 731 44.6
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.9e-154 548.5 706 46.9
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 8.7e-153 545.0 716 45.9
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.1e-152 544.7 753 44.8
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.5e-152 544.3 706 46.9
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 4.3e-152 542.7 713 46.8
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.6e-152 542.3 718 44.6
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.1e-150 538.1 701 45.4
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 9.0e-150 535.0 710 45.6
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 6.4e-148 528.9 700 45.1
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.1e-142 511.5 700 44.6
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 4.0e-142 509.6 723 43.7
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.5e-141 506.1 695 45.2
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 5.8e-141 505.8 513 55.2
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.3e-140 504.6 704 44.3
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.2e-139 500.0 707 42.7
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 7.1e-139 498.8 713 42.9
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 3.0e-137 493.4 721 42.9
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 6.7e-137 492.3 702 43.3
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.5e-136 491.1 718 41.5
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.5e-133 481.1 732 41.9
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 5.8e-133 479.2 733 42.4
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 5.0e-132 476.1 726 41.9
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.5e-132 475.7 717 41.3
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 7.2e-131 472.2 716 40.5
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 6.1e-130 469.2 672 43.3
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.8e-129 467.6 722 40.6
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.2e-125 454.9 724 39.5
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.5e-125 454.5 473 53.1
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.0e-124 451.8 405 57.8
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.3e-124 451.4 718 39.7
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.1e-123 448.4 515 49.1
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 8.8e-121 438.7 717 40.4
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.2e-115 420.2 730 39.6
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 5.5e-115 419.5 715 38.5
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 9.4e-115 418.7 712 38.9
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 9.4e-115 418.7 424 52.6
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.7e-114 417.2 717 39.1
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 7.9e-114 415.6 580 42.1
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 2.3e-113 414.1 691 38.8
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 3.0e-113 413.7 722 38.9
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.9e-113 413.3 722 38.9
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.0e-112 411.0 724 38.4
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 7.0e-110 402.5 426 53.1
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.6e-109 401.4 691 40.4
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 8.5e-108 395.6 688 36.6
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.3e-105 387.5 686 36.2
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 5.0e-100 369.8 705 36.9
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-99 368.6 502 43.6
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.1e-99 368.6 510 43.9
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 9.8e-96 355.5 717 34.9
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.2e-95 354.4 363 53.4
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.2e-89 333.2 712 34.4
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.7e-87 328.2 702 32.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.9e-84 317.4 428 44.2
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.5e-83 314.3 759 32.8
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.1e-78 298.9 306 52.6
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.4e-72 276.9 407 41.5
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.4e-70 270.0 659 32.5
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.7e-66 256.9 384 41.9
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 5.8e-64 250.0 729 28.8
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 9.5e-59 232.6 823 26.6
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.8e-58 231.1 136 83.1
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.8e-57 228.4 177 63.3
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 9.9e-56 222.6 136 81.6
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.3e-55 222.2 397 36.5
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 9.2e-54 216.1 806 25.6
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.4e-40 171.0 229 45.4
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.9e-38 165.2 254 39.0
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.6e-37 162.2 147 56.5
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 4.8e-34 150.6 494 28.9
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-33 149.1 766 23.5
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 8.4e-31 139.8 203 43.3
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 4.2e-30 137.5 515 25.0
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.5e-30 137.1 247 37.7
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.1e-25 121.3 337 30.3
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.3e-25 120.6 108 53.7
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 7.6e-24 116.7 236 36.0
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.7e-23 115.5 161 40.4
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.7e-20 103.6 198 31.3
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.8e-18 97.4 192 30.7
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.6e-16 91.7 129 42.6
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.5e-16 90.9 378 25.7
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 1.3e-15 89.4 154 38.3
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-12 78.6 239 31.0
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 6.7e-12 77.0 76 51.3
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.7e-12 77.0 82 54.9
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 1.1e-11 76.3 62 53.2
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 7.4e-11 73.6 152 34.9
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 9.7e-11 73.2 76 50.0
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.8e-09 68.9 57 52.6
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 2.4e-09 68.6 110 33.6
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.2e-08 66.2 99 39.4
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 1.5e-08 65.9 175 29.1
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.3e-07 62.8 322 23.3
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.9e-07 61.6 150 32.0


User provided reference genes

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