Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1381.7 713 100.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1306.2 713 95.0
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1298.9 703 95.6
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1286.6 713 93.7
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1242.6 713 90.0
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1230.3 711 90.0
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1217.2 709 89.1
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1203.0 707 87.8
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1199.9 706 87.3
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1199.9 707 87.3
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1191.8 713 85.8
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1189.5 703 86.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1186.0 713 86.5
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 705 86.5
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 710 86.3
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1181.8 703 86.9
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1181.8 713 86.0
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1181.0 713 86.3
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1180.2 713 86.3
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1178.7 709 86.2
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1172.1 703 86.6
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 709 84.2
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 698 86.0
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 698 86.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 689 86.6
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 689 86.6
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 689 86.6
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 690 87.8
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 698 85.8
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1164.4 713 84.9
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 713 83.6
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 713 84.7
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1162.9 713 84.7
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 689 86.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1159.8 698 85.5
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 699 85.7
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 719 83.9
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 703 85.1
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 713 85.1
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 699 85.8
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1149.8 675 87.4
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 709 84.2
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 736 82.2
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 741 81.0
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 698 85.2
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 692 85.4
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 724 83.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 698 84.0
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 692 84.7
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1140.9 692 84.5
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1140.9 713 82.7
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 696 84.8
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1134.4 703 82.4
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1134.4 703 82.1
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 698 83.5
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 697 84.6
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 700 84.3
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1131.7 703 82.1
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 706 81.7
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 692 85.3
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 703 81.8
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 703 81.8
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1129.0 703 81.8
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1129.0 691 84.7
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1128.2 703 81.7
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1128.2 695 82.9
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1127.9 718 82.6
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 703 81.7
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 699 82.5
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 699 82.5
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 704 81.5
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 702 83.6
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 695 83.0
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 730 80.1
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 713 82.9
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 702 83.6
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 707 80.6
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1113.2 699 81.0
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 700 82.1
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1109.4 696 81.6
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 688 82.4
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1107.0 703 80.5
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1104.4 701 80.2
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 672 83.5
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 696 81.0
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1096.3 774 75.1
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1095.9 690 82.0
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1090.9 701 80.2
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1086.6 742 76.7
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1077.0 745 76.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.9e-312 1074.3 698 77.9
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 4.9e-312 1073.5 687 80.2
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.3e-311 1070.1 708 79.1
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.5e-306 1055.8 700 77.4
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 4.0e-304 1047.7 742 75.1
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.8e-301 1038.9 670 80.9
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 5.3e-301 1037.3 694 76.9
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.0e-296 1023.1 724 73.6
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 5.7e-295 1017.3 751 70.8
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 3.3e-282 974.9 595 83.2
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.1e-281 972.2 635 80.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.5e-279 966.1 624 79.5
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.8e-276 953.7 693 69.4
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.8e-276 953.7 693 69.4
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.5e-271 937.2 588 80.3
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.7e-270 936.0 699 67.1
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 2.2e-262 909.1 698 66.5
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.9e-261 906.0 687 72.2
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 5.1e-259 897.9 592 78.5
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 6.6e-259 897.5 695 66.0
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 4.0e-256 888.3 570 78.6
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 5.8e-255 884.4 558 81.0
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 2.5e-250 869.0 516 87.8
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.2e-244 850.1 679 69.1
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.9e-236 820.8 499 85.4
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.6e-220 768.5 685 57.2
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 3.1e-208 729.2 677 54.8
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 5.5e-205 718.4 423 83.9
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.7e-193 680.2 475 78.5
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.2e-153 547.0 328 81.7
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 6.6e-150 535.4 736 43.3
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.3e-137 494.6 761 37.6
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.7e-134 484.2 280 85.7
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.8e-130 469.2 273 85.3
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.0e-122 444.1 269 83.6
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.4e-114 416.8 372 58.6
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.9e-112 411.0 253 81.0
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 9.3e-112 408.7 233 85.8
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 9.3e-112 408.7 748 35.2
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.5e-111 406.8 237 86.1
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.5e-104 384.0 265 77.7
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.0e-98 364.4 255 78.4
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.2e-80 303.9 182 79.1
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 4.7e-79 300.1 197 85.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 5.3e-75 286.6 215 68.4
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.2e-73 281.2 148 91.2
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 9.4e-72 275.8 195 72.8
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.7e-63 247.7 196 74.5
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-59 235.7 155 65.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.5e-56 225.3 165 72.1
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 2.5e-56 224.6 156 72.4
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 4.1e-51 207.2 492 29.5
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 9.2e-51 206.1 179 65.9
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 5.0e-49 200.3 221 54.8
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.2e-44 184.9 114 85.1
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.1e-43 182.6 122 78.7
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.0e-41 176.0 110 86.4
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.1e-38 166.0 104 79.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.4e-35 153.7 115 69.6
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.3e-30 138.3 100 71.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.5e-29 135.6 100 69.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.5e-29 135.6 100 69.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.4e-27 127.1 81 79.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.6e-26 125.6 151 51.7
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.2e-23 115.9 69 88.4
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.2e-21 109.4 93 67.7
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 5.8e-21 107.1 69 72.5
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.8e-20 104.4 63 79.4
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.2e-19 101.3 57 86.0
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.2e-18 99.4 118 50.8
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 2.1e-18 98.6 59 81.4
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.0e-17 96.3 93 55.9
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.3e-17 95.9 62 74.2
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.1e-15 88.6 65 72.3
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.1e-11 76.3 78 51.3
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.1e-11 76.3 46 78.3
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.6e-10 72.4 61 65.6
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.6e-09 67.0 61 63.9
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 6.6e-09 67.0 40 85.0


User provided reference genes

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