Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.0e-246 854.7 441 100.0
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 5.4e-235 817.4 441 97.1
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.6e-231 805.8 441 95.5
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.5e-226 788.1 454 91.9
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.4e-219 766.1 444 91.4
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 5.3e-190 667.9 451 79.4
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 2.0e-181 639.4 458 76.6
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.9e-179 632.9 458 73.8
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 9.3e-179 630.6 464 74.6
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 3.5e-178 628.6 465 74.2
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.0e-177 627.1 404 82.4
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.3e-177 626.7 463 74.1
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 3.0e-177 625.5 463 74.1
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 6.7e-177 624.4 457 74.2
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 6.7e-177 624.4 465 73.5
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.5e-176 622.5 460 74.1
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.6e-175 619.8 461 71.8
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.8e-175 619.0 465 73.8
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 2.8e-175 619.0 468 73.1
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 2.8e-175 619.0 462 72.3
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 6.2e-175 617.8 464 73.9
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.1e-174 617.1 468 72.9
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.4e-174 616.7 461 72.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.8e-174 616.3 456 72.6
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.4e-174 615.9 458 72.7
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 2.6e-173 612.5 471 71.3
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.2e-172 609.4 456 71.3
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.8e-172 608.6 463 72.6
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.2e-171 605.5 464 71.1
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.5e-170 602.1 464 71.8
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 3.5e-170 602.1 457 71.1
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.3e-169 600.1 464 71.8
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 5.1e-169 598.2 452 71.2
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 8.7e-169 597.4 462 70.3
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 1.5e-168 596.7 450 73.1
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 2.8e-167 592.4 456 71.3
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 3.7e-167 592.0 499 67.1
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 6.3e-167 591.3 462 70.3
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.4e-166 590.1 456 70.8
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 2.4e-166 589.3 470 70.9
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 9.0e-166 587.4 455 70.1
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 1.2e-165 587.0 462 69.9
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.5e-165 585.1 455 69.9
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.0e-164 583.9 463 69.1
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 2.2e-164 582.8 462 67.5
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 2.2e-164 582.8 454 69.4
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 2.9e-164 582.4 441 71.9
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 2.9e-164 582.4 447 71.1
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 6.5e-164 581.3 460 69.6
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 8.5e-164 580.9 460 70.2
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 1.9e-163 579.7 457 69.4
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 4.2e-163 578.6 441 71.2
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 4.2e-163 578.6 464 70.3
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 7.2e-163 577.8 447 69.8
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 4.6e-162 575.1 430 73.0
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 7.9e-162 574.3 460 67.8
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.4e-161 573.5 447 70.7
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.8e-161 573.2 473 66.8
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 2.3e-161 572.8 451 69.4
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 3.0e-161 572.4 457 69.1
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 5.1e-161 571.6 463 67.2
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 5.7e-160 568.2 462 67.3
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 5.7e-160 568.2 462 68.2
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 9.7e-160 567.4 456 68.4
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 6.3e-159 564.7 467 69.6
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 2.4e-158 562.8 470 65.5
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 4.1e-158 562.0 455 66.4
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 9.1e-158 560.8 448 66.7
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 5.9e-157 558.1 448 67.0
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 5.9e-157 558.1 448 67.0
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.0e-156 557.4 462 68.0
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.3e-156 557.0 448 66.7
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 2.2e-156 556.2 455 66.6
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.2e-156 556.2 454 67.8
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 5.0e-156 555.1 455 66.4
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 6.5e-156 554.7 453 67.3
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-155 553.9 461 65.9
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 2.5e-155 552.7 454 66.5
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 2.5e-155 552.7 452 65.5
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.2e-155 552.4 448 65.8
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 5.5e-155 551.6 458 65.1
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 7.2e-155 551.2 452 67.5
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.2e-154 550.4 508 63.0
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 7.9e-154 547.7 462 66.0
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.8e-153 546.6 480 65.6
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.3e-153 546.2 457 63.9
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 6.7e-153 544.7 436 69.0
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.5e-152 543.5 440 69.8
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 5.7e-152 541.6 478 62.6
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 7.4e-152 541.2 459 64.5
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.7e-151 540.0 460 64.3
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 6.3e-151 538.1 462 64.7
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.4e-150 537.0 454 65.0
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 1.8e-150 536.6 462 64.5
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 4.1e-150 535.4 460 63.3
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.0e-149 533.1 447 67.6
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 5.9e-149 531.6 455 63.7
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 7.7e-149 531.2 459 65.8
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 7.7e-149 531.2 463 63.5
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.7e-148 530.0 423 69.3
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 7.2e-147 524.6 466 65.7
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 7.2e-147 524.6 431 67.5
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 2.7e-146 522.7 480 61.5
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 2.7e-146 522.7 453 64.2
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 6.1e-146 521.5 455 63.1
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.8e-145 520.0 463 63.5
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 7.4e-144 514.6 457 63.5
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 6.3e-143 511.5 462 62.8
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 1.4e-137 493.8 459 63.8
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.8e-137 493.4 465 61.3
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 2.2e-135 486.5 459 62.7
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 4.8e-135 485.3 373 68.1
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.0e-133 479.9 431 63.1
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 5.0e-132 475.3 435 61.8
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.1e-126 457.6 413 61.7
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 2.4e-126 456.4 421 62.2
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 5.4e-126 455.3 378 66.7
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 1.4e-121 440.7 482 57.9
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 8.9e-121 438.0 517 52.0
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 4.9e-119 432.2 481 52.8
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 2.5e-115 419.9 429 57.8
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 5.6e-115 418.7 464 54.7
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 9.5e-115 417.9 406 58.1
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 1.2e-112 411.0 342 65.8
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.5e-112 410.6 348 66.7
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 9.8e-112 407.9 484 49.2
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 8.6e-108 394.8 511 46.2
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 2.0e-104 383.6 442 51.4
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 6.2e-98 362.1 502 44.0
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-97 361.3 467 49.5
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 1.3e-92 344.4 264 66.7
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 4.3e-91 339.3 377 53.3
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 5.4e-86 322.4 346 54.3
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 5.3e-81 305.8 563 37.8
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 2.2e-79 300.4 490 43.5
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 1.3e-74 284.6 365 50.4
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.4e-73 281.2 378 45.2
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 8.4e-71 271.9 527 37.2
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 4.1e-57 226.5 251 57.4
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 9.0e-57 225.3 390 36.9
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 5.0e-55 219.5 183 63.4
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 1.0e-52 211.8 187 59.9
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 3.3e-51 206.8 188 59.6
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 3.3e-51 206.8 130 78.5
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 2.0e-48 197.6 181 59.1
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.6e-45 188.0 263 47.5
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 2.3e-44 184.1 268 40.7
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.3e-42 178.3 387 35.1
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 5.3e-41 172.9 235 47.2
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 5.7e-35 152.9 110 63.6
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 8.5e-31 139.0 362 32.3
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.4e-28 131.7 150 46.0
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 2.3e-28 131.0 134 59.0
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 4.4e-27 126.7 90 65.6
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 7.0e-25 119.4 149 54.4
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.0e-24 117.9 138 57.2
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 7.7e-24 115.9 133 57.9
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 1.2e-21 108.6 181 42.0
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 6.3e-18 96.3 76 53.9
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 8.3e-18 95.9 82 65.9
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.6e-16 91.7 109 47.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.0e-15 89.0 169 45.0
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 1.5e-14 85.1 318 25.2
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 1.2e-13 82.0 64 68.8
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 6.8e-12 76.3 103 42.7
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 3.4e-11 73.9 209 33.5
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 9.8e-11 72.4 119 43.7
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 2.5e-06 57.8 42 61.9
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 7.3e-06 56.2 32 81.2
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 9.5e-06 55.8 127 39.4
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 9.5e-06 55.8 40 67.5


User provided reference genes

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