Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.0e-198 693.7 347 100.0
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.6e-128 462.6 302 80.8
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.7e-123 444.9 296 79.4
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.8e-121 439.9 296 78.7
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.4e-121 439.5 296 78.4
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.1e-118 430.6 295 77.3
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 8.5e-111 404.4 270 79.3
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 5.0e-103 378.6 287 69.0
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.6e-99 366.3 287 65.5
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.6e-99 366.3 287 66.9
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.4e-99 365.9 289 66.1
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 4.4e-99 365.5 287 65.5
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.8e-98 362.8 291 66.3
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.1e-97 360.9 287 64.8
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 5.9e-96 355.1 287 64.1
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.3e-95 354.0 287 64.5
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 2.3e-95 353.2 286 64.0
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 3.9e-95 352.4 285 63.9
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 3.9e-95 352.4 326 58.0
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.5e-94 350.5 284 65.1
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 9.5e-94 347.8 284 63.7
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.6e-93 347.1 287 63.4
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.1e-93 346.7 284 64.8
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 2.1e-93 346.7 284 63.7
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 6.1e-93 345.1 285 63.9
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.8e-92 343.6 287 64.1
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.8e-92 343.6 290 61.4
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 2.3e-92 343.2 284 63.4
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 2.3e-92 343.2 284 63.4
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 2.3e-92 343.2 320 58.4
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 2.3e-92 343.2 294 61.9
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 2.3e-92 343.2 284 63.7
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 5.2e-92 342.0 285 63.2
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 5.2e-92 342.0 284 63.0
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.5e-91 340.5 289 61.6
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 2.0e-91 340.1 286 60.8
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.4e-91 339.3 283 63.3
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 7.5e-91 338.2 290 60.3
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 7.5e-91 338.2 284 62.7
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 7.5e-91 338.2 288 62.8
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 9.8e-91 337.8 283 62.9
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.7e-90 337.0 285 62.1
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 2.2e-90 336.7 287 61.0
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.2e-90 336.7 295 61.0
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 3.7e-90 335.9 291 61.2
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 4.9e-90 335.5 288 61.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 6.4e-90 335.1 288 63.2
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.4e-89 334.0 286 60.5
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.9e-89 333.6 266 66.5
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.1e-89 332.4 289 60.2
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.1e-89 332.4 289 60.2
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 5.4e-89 332.0 289 60.6
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 5.4e-89 332.0 266 65.4
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 7.0e-89 331.6 284 59.9
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 9.2e-89 331.3 286 59.8
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.2e-88 330.9 285 60.4
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.6e-88 330.5 289 60.9
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 1.6e-88 330.5 287 60.6
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.6e-88 330.5 285 61.1
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 2.7e-88 329.7 288 59.4
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 2.7e-88 329.7 285 60.0
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.5e-88 329.3 280 62.5
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.6e-88 328.9 287 59.9
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 6.0e-88 328.6 289 59.9
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 7.8e-88 328.2 286 58.7
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 7.8e-88 328.2 282 61.3
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 3.0e-87 326.2 287 59.2
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 3.9e-87 325.9 286 58.7
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.9e-87 325.9 284 58.8
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 6.6e-87 325.1 288 59.4
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 8.6e-87 324.7 287 58.9
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.5e-86 323.9 290 59.7
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.5e-86 323.2 287 60.3
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 3.3e-86 322.8 287 59.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 3.3e-86 322.8 292 58.6
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.2e-85 320.9 340 52.6
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.6e-85 320.5 290 59.0
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 2.1e-85 320.1 290 60.7
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 2.8e-85 319.7 290 57.9
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.1e-84 317.8 290 59.3
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.1e-84 317.8 290 59.3
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.1e-84 317.8 290 59.3
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.1e-84 316.2 291 57.4
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 3.1e-84 316.2 342 52.0
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 5.2e-84 315.5 304 56.6
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.5e-83 313.9 289 57.4
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 2.0e-83 313.5 288 58.0
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.6e-83 313.2 248 66.1
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 3.4e-83 312.8 290 58.6
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.4e-83 312.8 286 57.3
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 3.4e-83 312.8 387 48.1
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 5.8e-83 312.0 289 57.4
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 7.5e-83 311.6 284 56.0
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 2.2e-82 310.1 290 58.6
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.9e-81 307.0 290 58.6
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.1e-80 303.5 281 57.3
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 4.6e-80 302.4 288 56.6
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.9e-79 299.3 246 63.0
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 6.6e-79 298.5 290 55.5
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 6.6e-79 298.5 251 62.9
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 2.1e-77 293.5 262 56.9
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 3.4e-75 286.2 328 49.7
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 5.8e-75 285.4 260 58.1
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.2e-72 277.7 252 57.9
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.7e-71 273.9 287 53.3
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 9.6e-70 268.1 247 58.3
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 4.7e-69 265.8 224 61.2
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 6.4e-66 255.4 217 61.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.9e-65 253.8 289 50.9
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.0e-63 248.1 282 47.5
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.4e-60 237.7 215 57.2
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 1.8e-60 237.3 280 45.4
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 4.4e-59 232.6 277 44.8
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 3.9e-55 219.5 190 60.0
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.3e-52 209.1 206 55.3
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.9e-49 200.7 112 84.8
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 4.6e-48 196.1 115 81.7
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 5.1e-47 192.6 246 44.7
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 3.4e-43 179.9 121 74.4
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.3e-42 177.9 152 63.2
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.7e-42 177.6 236 44.1
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 3.8e-42 176.4 135 68.9
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-41 174.9 194 50.0
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-41 174.9 194 50.0
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.9e-41 174.1 278 35.6
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 9.3e-41 171.8 217 48.4
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.1e-40 170.6 144 61.1
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 1.8e-39 167.5 118 69.5
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 3.0e-39 166.8 185 50.8
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 7.1e-33 145.6 282 34.0
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.2e-32 144.8 127 62.2
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 5.1e-31 139.4 121 60.3
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 1.1e-28 131.7 141 51.1
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.2e-27 128.3 80 77.5
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.7e-26 124.4 99 61.6
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 2.9e-26 123.6 81 74.1
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.4e-25 118.6 79 62.0
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 2.0e-22 110.9 242 33.1
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 2.0e-22 110.9 91 56.0
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.7e-22 109.4 166 42.8
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 6.9e-20 102.4 80 62.5
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.9e-18 97.1 100 58.0
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.1e-17 95.1 54 81.5
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 2.5e-17 94.0 293 28.3
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 3.2e-17 93.6 50 84.0
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.2e-17 93.2 161 39.8
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.8e-15 87.8 70 62.9
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.7e-13 81.3 239 26.8
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 8.5e-10 68.9 162 34.6
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.6e-08 64.7 34 85.3
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 8.0e-08 62.4 49 59.2
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.4e-06 56.6 108 35.2
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 7.5e-06 55.8 30 83.3


User provided reference genes

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