Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.9e-137 491.5 252 100.0
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.5e-128 460.3 256 94.1
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-127 459.5 255 94.1
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.3e-124 447.2 258 90.7
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.2e-122 443.4 257 91.4
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 2.7e-106 389.0 254 80.7
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 5.1e-105 384.8 256 81.6
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.6e-103 379.8 252 80.2
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 6.2e-95 351.3 265 74.3
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 8.1e-95 350.9 253 75.1
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 6.4e-92 341.3 259 71.0
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 8.4e-92 340.9 257 72.0
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.9e-91 339.7 250 73.2
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 4.2e-91 338.6 261 72.4
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.5e-91 338.2 259 70.3
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-90 337.0 259 69.9
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-90 337.0 259 69.9
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.1e-90 336.3 259 69.9
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.1e-90 336.3 255 71.4
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 3.5e-90 335.5 254 72.4
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.6e-90 335.1 256 70.3
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.3e-89 333.6 260 69.6
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.3e-89 333.6 255 70.6
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 8.7e-89 330.9 251 70.9
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.5e-88 330.1 250 70.0
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 9.6e-88 327.4 257 68.9
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 9.6e-88 327.4 247 69.2
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.3e-87 327.0 246 71.5
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.3e-87 327.0 267 68.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.6e-87 326.6 256 68.0
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.8e-87 325.9 257 70.0
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 3.7e-87 325.5 254 68.9
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 4.8e-87 325.1 250 70.4
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.2e-87 324.7 246 69.1
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.2e-87 324.7 239 70.7
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.8e-86 323.2 248 71.0
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.4e-86 322.8 248 71.4
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.4e-86 322.8 246 67.9
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 5.3e-86 321.6 252 68.3
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 6.9e-86 321.2 249 71.1
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.2e-85 320.5 254 68.9
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.2e-85 320.5 249 68.3
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.5e-85 320.1 250 68.8
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 2.0e-85 319.7 235 70.2
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.6e-85 319.3 262 68.7
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 3.4e-85 318.9 256 66.8
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 3.4e-85 318.9 247 68.8
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 3.4e-85 318.9 261 67.8
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 7.6e-85 317.8 240 69.6
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 2.2e-84 316.2 249 68.7
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 3.8e-84 315.5 250 67.2
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 4.9e-84 315.1 233 71.7
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 6.5e-84 314.7 251 66.9
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-83 313.9 259 67.2
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.9e-83 313.2 253 68.8
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.9e-83 313.2 252 67.5
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 4.2e-83 312.0 247 69.2
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 9.3e-83 310.8 187 82.9
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.2e-82 310.5 264 64.0
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.6e-82 310.1 257 66.5
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.5e-82 308.9 251 67.3
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 4.6e-82 308.5 255 67.5
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.6e-82 308.5 232 70.7
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.6e-82 308.5 256 67.6
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 4.6e-82 308.5 261 67.4
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 6.0e-82 308.1 251 68.5
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 6.0e-82 308.1 250 64.8
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 7.9e-82 307.8 180 83.9
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.0e-81 307.4 254 63.4
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.8e-81 306.6 254 66.1
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.3e-81 306.2 244 67.2
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.3e-81 306.2 250 66.8
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.5e-80 303.5 248 66.5
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.5e-80 303.5 237 68.8
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.9e-80 303.1 244 65.2
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.9e-80 303.1 259 64.9
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 2.5e-80 302.8 258 63.6
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 5.7e-80 301.6 257 66.9
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 9.7e-80 300.8 257 65.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 9.7e-80 300.8 250 67.2
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.2e-79 299.7 238 68.5
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.7e-79 298.9 256 64.8
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 3.7e-79 298.9 251 66.9
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 4.8e-79 298.5 255 64.7
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 8.2e-79 297.7 246 66.3
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 8.2e-79 297.7 255 64.7
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.1e-78 297.4 252 65.5
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.4e-78 297.0 221 70.1
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-78 295.8 260 64.6
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.1e-78 295.4 255 63.9
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 9.0e-78 294.3 228 71.5
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.2e-77 293.9 244 64.8
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.2e-77 293.9 253 64.8
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.2e-77 293.9 261 63.2
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 2.6e-77 292.7 248 66.1
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.4e-77 292.4 256 65.2
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.3e-76 290.4 239 64.9
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 8.5e-76 287.7 221 67.4
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 7.2e-75 284.6 240 63.8
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.7e-74 282.7 199 72.4
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 3.0e-73 279.3 202 70.3
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.9e-73 278.9 253 62.5
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 8.8e-73 277.7 245 60.8
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.7e-71 273.5 257 61.1
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 8.2e-71 271.2 169 80.5
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.1e-70 270.8 240 61.7
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.1e-70 270.8 255 60.8
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 2.4e-70 269.6 252 61.1
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.4e-70 269.6 258 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.1e-70 269.2 197 68.0
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 3.1e-70 269.2 183 72.7
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.1e-70 269.2 198 68.2
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 3.1e-70 269.2 185 68.6
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 4.1e-70 268.9 183 73.2
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 5.3e-70 268.5 260 60.4
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-69 267.3 244 60.2
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.2e-69 267.3 244 59.8
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.2e-69 267.3 244 59.8
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.2e-69 267.3 248 58.5
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.6e-69 266.2 248 58.5
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.6e-69 266.2 243 63.8
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.4e-69 265.8 248 59.7
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 4.5e-69 265.4 253 60.1
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.9e-69 265.0 254 59.1
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 7.7e-69 264.6 221 65.2
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.9e-67 260.0 247 59.5
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.9e-67 260.0 174 71.8
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 4.2e-67 258.8 248 58.1
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.2e-66 257.3 248 56.9
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.2e-66 257.3 174 70.7
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 2.7e-66 256.1 247 56.7
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.0e-65 254.2 249 61.8
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 2.0e-64 250.0 155 80.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-62 244.2 226 61.1
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 4.1e-62 242.3 150 76.0
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 7.0e-62 241.5 190 63.2
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.5e-61 238.8 267 56.6
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 4.1e-54 215.7 185 64.9
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 2.0e-53 213.4 121 86.8
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 2.6e-53 213.0 132 75.0
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.9e-51 206.8 205 59.0
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 4.2e-51 205.7 184 59.2
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.2e-49 198.7 118 83.9
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.3e-47 194.1 176 65.3
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.8e-47 193.0 223 50.2
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 8.3e-47 191.4 227 51.5
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.0e-45 186.8 187 60.4
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 2.2e-44 183.3 235 51.1
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 6.5e-44 181.8 171 64.3
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.5e-43 180.6 227 50.7
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 5.5e-43 178.7 125 74.4
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.1e-42 175.3 202 48.5
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.8e-41 173.7 262 46.9
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-30 137.5 99 68.7
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.3e-28 130.2 106 63.2
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 5.0e-28 129.0 75 81.3
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.3e-25 120.2 80 72.5
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 3.1e-25 119.8 76 75.0
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 3.7e-23 112.8 73 74.0
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.4e-22 110.9 125 51.2
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.4e-22 110.9 112 55.4
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 7.0e-22 108.6 105 60.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.1e-19 101.3 201 38.3
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.7e-13 80.1 198 35.4
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.6e-12 75.5 50 76.0
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.6e-10 70.9 156 35.3
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.1e-09 68.2 151 31.1
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 2.3e-09 67.0 151 32.5
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 7.6e-08 62.0 54 53.7
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 7.6e-08 62.0 105 35.2
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.2e-07 60.5 54 57.4
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.9e-07 60.1 153 30.7
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 2.4e-06 57.0 96 39.6


User provided reference genes

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