Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 0.0e+00 1443.3 725 100.0
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 0.0e+00 1305.8 682 96.0
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 0.0e+00 1287.3 682 96.3
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 0.0e+00 1219.1 683 87.4
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 3.5e-308 1061.2 687 75.7
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 1.3e-297 1026.2 684 73.4
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 8.1e-297 1023.5 709 77.9
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 1.5e-271 939.5 682 68.0
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 2.6e-263 912.1 682 66.1
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 2.7e-260 902.1 743 62.6
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 6.1e-252 874.4 691 62.7
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 9.1e-248 860.5 684 63.5
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 2.2e-246 855.9 689 62.8
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 2.9e-246 855.5 689 62.7
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 1.6e-244 849.7 690 61.6
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 2.7e-244 849.0 697 61.8
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 6.7e-243 844.3 685 61.3
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 2.0e-242 842.8 702 61.5
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 4.8e-241 838.2 697 62.7
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 2.7e-239 832.4 694 62.2
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 5.9e-239 831.2 695 61.9
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 5.9e-239 831.2 697 62.3
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 5.5e-237 824.7 705 61.4
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 5.5e-237 824.7 683 61.8
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 1.6e-236 823.2 700 62.1
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 1.6e-236 823.2 695 61.7
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 6.8e-235 817.8 724 57.2
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.5e-234 816.6 717 58.6
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 2.6e-234 815.8 694 61.7
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 3.4e-234 815.5 722 60.1
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 3.7e-233 812.0 694 59.2
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 8.3e-233 810.8 712 57.6
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 2.4e-232 809.3 693 59.6
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 1.0e-230 803.9 709 58.5
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 8.6e-230 800.8 714 57.3
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 1.1e-229 800.4 691 59.2
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 4.2e-229 798.5 698 57.6
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 1.6e-228 796.6 726 57.9
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 2.1e-228 796.2 701 57.8
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 3.6e-228 795.4 690 58.4
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 6.1e-228 794.7 700 57.6
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 3.0e-227 792.3 695 57.4
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 3.0e-227 792.3 741 57.6
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 1.7e-225 786.6 739 56.0
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 4.1e-224 781.9 690 59.6
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 1.2e-223 780.4 697 56.7
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.6e-223 780.0 642 63.1
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 1.6e-223 780.0 682 57.9
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 3.5e-223 778.9 693 57.0
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 5.9e-223 778.1 691 59.2
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 5.0e-222 775.0 688 58.7
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 1.1e-221 773.9 687 59.7
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 3.3e-221 772.3 688 58.4
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 4.3e-221 771.9 716 55.6
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 7.3e-221 771.2 689 59.2
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 1.2e-220 770.4 689 58.9
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 8.9e-219 764.2 692 55.6
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 3.4e-218 762.3 688 58.0
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 4.4e-218 761.9 691 59.8
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 4.1e-216 755.4 691 57.7
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 7.0e-216 754.6 697 58.8
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 1.6e-215 753.4 692 56.9
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 2.7e-215 752.7 724 54.6
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 1.3e-214 750.4 699 57.5
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 1.2e-212 743.8 511 70.6
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 1.1e-211 740.7 697 55.4
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 2.6e-210 736.1 702 53.6
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 2.2e-209 733.0 699 55.7
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 1.2e-207 727.2 728 53.7
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 2.7e-207 726.1 688 56.5
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 2.7e-207 726.1 692 53.2
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 1.0e-206 724.2 704 53.4
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 1.9e-205 719.9 697 55.4
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 4.7e-204 715.3 706 52.5
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 3.1e-203 712.6 697 52.5
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 2.6e-202 709.5 700 52.1
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 7.8e-199 698.0 696 51.9
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 2.5e-197 693.0 698 50.7
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 3.6e-196 689.1 688 53.5
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.5e-181 639.8 712 50.3
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 1.3e-180 637.5 618 54.2
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 5.3e-179 632.1 514 60.5
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 6.4e-169 598.6 503 59.2
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 2.5e-157 560.1 549 57.2
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 4.3e-149 532.7 487 57.5
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 5.3e-147 525.8 477 57.9
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 1.9e-144 517.3 660 43.0
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 3.9e-142 509.6 654 43.4
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 5.2e-118 429.5 363 60.6
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 1.4e-115 421.4 772 34.5
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 2.8e-95 354.0 814 33.5
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 3.9e-73 280.4 247 61.1
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 3.3e-48 197.6 186 55.4
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 6.9e-46 189.9 280 41.8
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 1.0e-41 176.0 129 62.0
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 8.7e-41 172.9 168 57.1
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.1e-40 172.6 182 55.5
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 3.4e-37 161.0 165 52.7
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 1.3e-36 159.1 96 74.0
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 3.2e-35 154.5 142 59.9
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 4.2e-35 154.1 163 49.1
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 6.3e-31 140.2 108 60.2
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 6.3e-31 140.2 420 28.8
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 6.1e-26 123.6 75 66.7
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 6.1e-18 97.1 82 65.9
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.4e-14 85.1 67 62.7
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 7.0e-14 83.6 67 61.2
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 2.6e-13 81.6 70 57.1
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 7.7e-13 80.1 59 61.0
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 1.5e-11 75.9 56 55.4
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 3.6e-10 71.2 45 64.4
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 1.8e-09 68.9 195 27.7
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 8.8e-09 66.6 193 25.9
Lsat_1_v5_gn_6_20981 Lactuca sativa HOM05D000442 ORTHO05D001242 1.5e-08 65.9 59 50.8
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 2.0e-08 65.5 196 28.1
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 2.6e-08 65.1 198 26.3
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 3.4e-08 64.7 169 29.6
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 3.4e-08 64.7 194 26.3
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 4.4e-08 64.3 194 26.3
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 5.7e-08 63.9 195 27.2
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 5.7e-08 63.9 124 33.1
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 9.8e-08 63.2 194 25.3
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 9.8e-08 63.2 197 25.4
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 9.8e-08 63.2 198 26.3
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 1.3e-07 62.8 196 25.5
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.7e-07 62.4 198 25.8
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 1.7e-07 62.4 198 25.8
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 1.7e-07 62.4 193 24.9
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 1.7e-07 62.4 195 26.2
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 1.7e-07 62.4 193 25.9
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 2.2e-07 62.0 193 26.4
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 2.2e-07 62.0 193 25.9
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 2.2e-07 62.0 188 26.6
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 2.2e-07 62.0 193 23.8
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 2.8e-07 61.6 196 24.0
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 3.7e-07 61.2 198 24.7
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 3.7e-07 61.2 197 24.4
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 4.8e-07 60.8 148 32.4
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 4.8e-07 60.8 116 33.6
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 4.8e-07 60.8 193 25.9
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 6.3e-07 60.5 193 24.9
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 6.3e-07 60.5 197 26.4
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 8.3e-07 60.1 192 24.0
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 8.3e-07 60.1 192 24.0
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 8.3e-07 60.1 190 26.3
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 8.3e-07 60.1 197 24.9
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 1.4e-06 59.3 125 29.6
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 1.4e-06 59.3 194 25.3
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 1.8e-06 58.9 124 29.0
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 1.8e-06 58.9 197 25.4
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 1.8e-06 58.9 193 24.4
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 1.8e-06 58.9 196 26.5
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 1.8e-06 58.9 191 25.1
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 1.8e-06 58.9 146 29.5
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 1.8e-06 58.9 198 25.3
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 2.4e-06 58.5 198 27.8
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 2.4e-06 58.5 195 23.6
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 2.4e-06 58.5 119 29.4
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 2.4e-06 58.5 190 25.8
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 2.4e-06 58.5 119 29.4
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 3.1e-06 58.2 124 28.2
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 3.1e-06 58.2 193 24.4
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 3.1e-06 58.2 193 23.3
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 3.1e-06 58.2 192 23.4
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 4.1e-06 57.8 193 25.4
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 4.1e-06 57.8 122 30.3
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 4.1e-06 57.8 193 24.9
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 5.4e-06 57.4 194 24.2
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 5.4e-06 57.4 193 24.9
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 5.4e-06 57.4 120 28.3
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 5.4e-06 57.4 197 23.9
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 5.4e-06 57.4 198 24.7
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 7.0e-06 57.0 193 24.4
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 7.0e-06 57.0 123 33.3
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 7.0e-06 57.0 123 33.3
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 7.0e-06 57.0 197 24.4
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 7.0e-06 57.0 196 24.0
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 9.1e-06 56.6 120 30.0
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 9.1e-06 56.6 195 25.1
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 9.1e-06 56.6 193 24.9
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 9.1e-06 56.6 197 23.9


User provided reference genes

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