Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2078 Fragaria x ananassa HOM05D003261 ORTHO05D014021 2.0e-65 253.4 288 100.0
BcaC07g40009 Brassica carinata HOM05D000211 ORTHO05D004230 5.8e-20 102.4 58 75.9
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 3.2e-18 96.7 58 77.6
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 7.0e-18 95.5 69 66.7
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 6.0e-17 92.4 82 58.5
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.3e-16 91.3 64 67.2
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 3.0e-16 90.1 58 70.7
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 1.1e-15 88.2 55 74.5
PGSC0003DMG400008918 Solanum tuberosum HOM05D003261 ORTHO05D004230 4.3e-15 86.3 57 68.4
Peaxi162Scf00321g00017 Petunia axillaris HOM05D003261 ORTHO05D014021 2.3e-13 80.5 57 64.9
Medtr2g019400 Medicago truncatula HOM05D003261 ORTHO05D004230 5.2e-13 79.3 57 68.4
PSO017G1819 Papaver somniferum HOM05D003261 ORTHO05D004230 2.0e-12 77.4 47 68.1
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 2.6e-12 77.0 50 68.0
FvH4_4g23450 Fragaria vesca HOM05D003261 ORTHO05D004230 5.8e-12 75.9 44 77.3
FAN12G3743 Fragaria x ananassa HOM05D003261 ORTHO05D004230 5.8e-12 75.9 44 77.3
HanXRQChr11g0341891 Helianthus annuus HOM05D003261 ORTHO05D024582 2.2e-11 73.9 42 71.4
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
ECA234G3111 Erigeron canadensis HOM05D001191 ORTHO05D000979 1.9e-10 70.9 40 75.0
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 1.9e-10 70.9 35 88.6
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 3.2e-10 70.1 35 85.7
FAN07G0835 Fragaria x ananassa HOM05D003261 ORTHO05D004230 3.2e-10 70.1 45 73.3
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 3.2e-10 70.1 35 88.6
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 4.1e-10 69.7 35 85.7
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 4.1e-10 69.7 35 85.7
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 4.1e-10 69.7 35 85.7
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 4.1e-10 69.7 35 85.7
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 4.1e-10 69.7 35 85.7
SMO240G0024 Selaginella moellendorffii HOM05D003261 ORTHO05D004230 4.1e-10 69.7 47 68.1
SMO340G0096 Selaginella moellendorffii HOM05D003261 ORTHO05D010935 4.1e-10 69.7 47 68.1
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 4.1e-10 69.7 35 85.7
A09p49870 Brassica napus HOM05D003261 ORTHO05D004230 5.4e-10 69.3 44 75.0
BraA09t40438Z Brassica rapa HOM05D003261 ORTHO05D004230 5.4e-10 69.3 44 75.0
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 5.4e-10 69.3 35 85.7
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 5.4e-10 69.3 35 85.7
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 5.4e-10 69.3 35 85.7
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 5.4e-10 69.3 35 85.7
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 5.4e-10 69.3 35 85.7
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 85.7
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 7.1e-10 68.9 53 60.4
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 85.7
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 85.7
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 85.7
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 82.9
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 7.1e-10 68.9 35 85.7
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 9.2e-10 68.6 35 82.9
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 9.2e-10 68.6 35 85.7
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 9.2e-10 68.6 35 80.0
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 9.2e-10 68.6 35 82.9
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 1.2e-09 68.2 35 82.9
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 1.2e-09 68.2 35 85.7
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 1.2e-09 68.2 34 88.2
MD00G1184900 Malus domestica HOM05D003261 ORTHO05D004230 1.2e-09 68.2 34 88.2
AagrBONN_evm.TU.Sc2ySwM_228.4942 Anthoceros agrestis HOM05D003261 ORTHO05D004230 1.6e-09 67.8 35 82.9
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 1.6e-09 67.8 35 85.7
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 1.6e-09 67.8 35 82.9
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 1.6e-09 67.8 35 82.9
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 1.6e-09 67.8 35 82.9
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 2.1e-09 67.4 35 82.9
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 2.1e-09 67.4 35 82.9
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 2.1e-09 67.4 35 82.9
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 2.1e-09 67.4 35 82.9
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 2.1e-09 67.4 35 82.9
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 2.1e-09 67.4 35 82.9
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 2.1e-09 67.4 34 85.3
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.1e-09 67.4 34 85.3
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.1e-09 67.4 34 85.3
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.1e-09 67.4 34 85.3
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.1e-09 67.4 34 85.3
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 2.1e-09 67.4 35 82.9
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 2.1e-09 67.4 35 82.9
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 2.1e-09 67.4 35 80.0
C08p32230 Brassica napus HOM05D000211 ORTHO05D041739 2.7e-09 67.0 35 80.0
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 2.7e-09 67.0 41 73.2
FAN07G0399 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.7e-09 67.0 33 97.0
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 2.7e-09 67.0 35 82.9
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 2.7e-09 67.0 35 82.9
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 2.7e-09 67.0 35 80.0
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 2.7e-09 67.0 35 82.9
Prupe.6G318200 Prunus persica HOM05D003261 ORTHO05D004230 2.7e-09 67.0 35 82.9
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 2.7e-09 67.0 35 82.9
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 3.5e-09 66.6 35 82.9
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 3.5e-09 66.6 34 82.4
Lalb_Chr18g0051601 Lupinus albus HOM05D003261 ORTHO05D004230 3.5e-09 66.6 40 75.0
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 3.5e-09 66.6 34 85.3
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 3.5e-09 66.6 34 85.3
MD16G1081900 Malus domestica HOM05D003261 ORTHO05D004230 4.6e-09 66.2 35 80.0
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 4.6e-09 66.2 33 87.9
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 4.6e-09 66.2 35 80.0
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 6.0e-09 65.9 35 80.0
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 6.0e-09 65.9 35 80.0
MD05G1262800 Malus domestica HOM05D003261 ORTHO05D004230 6.0e-09 65.9 34 82.4
PSO478G1326 Papaver somniferum HOM05D003261 ORTHO05D004230 6.0e-09 65.9 34 88.2
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 7.8e-09 65.5 35 80.0
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 7.8e-09 65.5 35 77.1
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 7.8e-09 65.5 35 80.0
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 7.8e-09 65.5 35 80.0
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 1.0e-08 65.1 35 80.0
Haze_18316 Corylus avellana HOM05D003261 ORTHO05D014021 1.0e-08 65.1 58 60.3
DCAR_030163 Daucus carota HOM05D003261 ORTHO05D004230 1.0e-08 65.1 30 86.7
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 1.0e-08 65.1 35 77.1
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 1.0e-08 65.1 35 77.1
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 1.3e-08 64.7 35 77.1
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 1.3e-08 64.7 35 77.1
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 1.3e-08 64.7 35 77.1
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 1.3e-08 64.7 35 80.0
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.3e-08 64.7 35 77.1
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.3e-08 64.7 35 77.1
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 1.3e-08 64.7 35 77.1
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 1.3e-08 64.7 35 77.1
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 1.3e-08 64.7 35 77.1
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 1.3e-08 64.7 35 77.1
AL6G53110 Arabidopsis lyrata HOM05D000915 ORTHO05D001662 1.7e-08 64.3 89 41.6
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 1.7e-08 64.3 35 77.1
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 1.7e-08 64.3 35 74.3
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 1.7e-08 64.3 35 77.1
Hma1.2p1_1807F.1_g303320 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 2.3e-08 63.9 38 73.7
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 2.3e-08 63.9 41 68.3
Sopen09g005330 Solanum pennellii HOM05D003261 ORTHO05D014021 2.3e-08 63.9 45 66.7
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 2.3e-08 63.9 35 80.0
Cfa002537 Carpinus fangiana HOM05D003261 ORTHO05D004230 3.0e-08 63.5 35 77.1
CBR_g46444 Chara braunii HOM05D003261 ORTHO05D004230 3.0e-08 63.5 35 80.0
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 3.0e-08 63.5 35 80.0
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 3.0e-08 63.5 35 77.1
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 3.9e-08 63.2 35 77.1
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 3.9e-08 63.2 35 80.0
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 3.9e-08 63.2 35 77.1
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 3.9e-08 63.2 35 77.1
Aqoxy3G03984 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 5.1e-08 62.8 34 79.4
DCAR_030161 Daucus carota HOM05D003261 ORTHO05D004230 5.1e-08 62.8 30 83.3
DCAR_030165 Daucus carota HOM05D003261 ORTHO05D004230 5.1e-08 62.8 30 83.3
TPR.G21926 Trifolium pratense HOM05D003261 ORTHO05D014021 5.1e-08 62.8 38 73.7
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 6.6e-08 62.4 35 77.1
DCAR_003343 Daucus carota HOM05D003261 ORTHO05D004230 6.6e-08 62.4 46 60.9
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 8.6e-08 62.0 35 74.3
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 8.6e-08 62.0 35 74.3
Nitab4.5_0014715g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 8.6e-08 62.0 35 71.4
Aqoxy7G03551 Aquilegia oxysepala HOM05D003261 ORTHO05D014021 1.1e-07 61.6 38 76.3
Cre10.g446900 Chlamydomonas reinhardtii HOM05D003261 ORTHO05D004230 1.9e-07 60.8 33 78.8
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 2.5e-07 60.5 35 77.1
TAR365G1013 Trochodendron aralioides HOM05D003261 ORTHO05D004230 2.5e-07 60.5 60 50.0
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 4.3e-07 59.7 35 74.3
MCO14G267 Micromonas commoda HOM05D003261 ORTHO05D004230 4.3e-07 59.7 34 73.5
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 4.3e-07 59.7 35 74.3
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 4.3e-07 59.7 35 74.3
Aqoxy3G03983 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 7.3e-07 58.9 40 67.5
Nitab4.5_0000593g0280 Nicotiana tabacum HOM05D003261 ORTHO05D285224 7.3e-07 58.9 34 76.5
PRCOL_00003913 Prasinoderma coloniale HOM05D003261 ORTHO05D004230 7.3e-07 58.9 32 75.0
Nitab4.5_0000244g0390 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.6e-06 57.8 33 78.8
HanXRQChr15g0490951 Helianthus annuus HOM05D003261 ORTHO05D004230 8.1e-06 55.5 33 75.8


User provided reference genes

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