Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 3060.0 1558 100.0
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2882.4 1488 98.7
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2877.4 1488 98.5
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2870.5 1488 98.4
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2838.5 1483 97.6
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2758.8 1488 94.0
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2529.6 1492 85.7
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2437.1 1491 83.6
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2412.1 1490 81.1
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2362.0 1498 79.2
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2359.7 1490 79.9
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2342.4 1497 78.7
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2338.1 1498 78.2
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2337.8 1500 77.8
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2334.3 1498 78.2
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2325.1 1498 78.0
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2322.7 1497 77.9
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2320.8 1493 77.7
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2320.4 1498 78.3
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2319.3 1498 78.2
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2318.1 1499 77.6
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2317.0 1496 77.1
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2315.8 1520 76.6
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2314.7 1492 77.5
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2306.2 1487 77.7
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2303.9 1494 78.0
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2300.8 1492 77.2
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2295.4 1498 76.7
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2295.0 1498 77.3
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2289.6 1492 76.7
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2288.1 1492 76.7
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2283.4 1494 76.2
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2276.5 1492 76.7
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2274.2 1494 76.2
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2258.8 1533 74.4
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2253.0 1481 76.2
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2248.4 1484 75.5
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2245.7 1494 75.6
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2244.9 1498 75.6
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2244.5 1490 75.0
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2243.0 1495 75.9
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2222.2 1449 77.6
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2222.2 1555 72.9
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2199.5 1499 73.2
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2191.0 1489 73.7
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2189.8 1493 73.5
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2181.0 1530 72.0
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2179.1 1485 73.6
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2164.0 1485 73.1
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2164.0 1569 70.6
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2160.6 1494 73.0
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2157.1 1497 72.9
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2156.7 1491 72.8
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2155.9 1490 72.8
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2154.4 1492 72.7
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2146.3 1496 72.6
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2144.8 1496 72.7
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2144.0 1498 72.8
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2132.1 1502 73.0
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2117.8 1496 72.3
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2116.7 1492 72.3
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2112.4 1497 71.3
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2100.1 1493 70.9
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2096.6 1493 71.2
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2090.1 1493 71.3
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2087.4 1553 69.7
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2087.0 1492 71.5
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2082.8 1488 71.8
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2081.2 1482 70.9
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2080.4 1497 70.3
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2065.8 1493 70.9
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2060.0 1486 70.7
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2059.6 1486 70.7
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2059.6 1490 70.6
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2056.6 1496 70.5
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2056.2 1488 70.8
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2051.9 1496 70.3
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2048.1 1301 80.0
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2046.2 1487 70.6
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2044.6 1481 70.1
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2040.4 1495 70.3
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2038.8 1497 70.1
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2038.8 1487 70.0
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2036.2 1496 69.9
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2034.6 1500 70.1
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2030.8 1496 70.1
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2027.3 1490 70.1
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2026.5 1306 78.9
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2019.6 1495 69.0
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2012.7 1475 69.7
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2011.1 1498 68.4
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2008.4 1587 67.4
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1998.8 1575 66.2
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1985.3 1309 77.5
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1974.5 1463 69.9
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1961.8 1277 76.7
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1931.8 1506 66.4
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1878.6 1391 70.7
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1847.4 1303 73.0
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1843.2 1485 63.8
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1836.6 1225 75.3
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1829.7 1473 62.7
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1815.0 1366 69.0
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1773.1 1665 57.8
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1769.6 1443 64.8
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1743.4 1434 61.4
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1590.1 1536 55.3
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1588.9 1512 55.4
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1579.7 988 78.5
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1455.7 1417 57.4
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1454.1 1087 70.8
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1374.4 1370 56.2
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1371.7 1203 58.2
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1326.6 1294 54.1
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1308.9 1372 54.4
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1158.7 746 77.7
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1127.1 739 79.2
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1106.7 1282 51.2
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 8.1e-302 1041.2 850 62.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.3e-259 901.0 782 62.3
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.3e-251 874.4 710 63.7
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 4.8e-246 855.9 924 54.1
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.3e-231 806.6 579 68.6
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.0e-207 727.6 597 64.0
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 5.8e-207 726.1 623 60.4
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 9.2e-189 665.6 892 44.6
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 1.5e-183 648.3 479 74.5
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.3e-178 630.6 363 79.6
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 3.8e-174 617.1 442 75.8
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.7e-166 591.7 742 45.4
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.7e-158 565.1 469 63.1
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 6.1e-148 530.0 581 54.2
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.8e-123 448.7 774 39.7
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 6.1e-100 370.5 218 86.7
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 8.6e-94 350.1 1763 24.6
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.1e-93 349.7 336 58.0
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 7.3e-93 347.1 1606 26.3
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.8e-90 337.4 445 44.5
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 1.2e-82 313.2 1609 24.8
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 8.3e-81 307.0 153 94.8
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.4e-80 305.4 224 67.9
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.6e-74 283.9 230 63.0
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.1e-71 275.8 238 62.6
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.9e-70 271.6 271 56.8
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 2.6e-66 258.8 195 66.7
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 1.7e-65 256.1 152 74.3
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 2.3e-46 192.6 102 85.3
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 6.2e-44 184.5 190 53.7
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.3e-41 176.8 190 54.7
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 2.5e-40 172.6 223 52.0
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 8.7e-38 164.1 159 53.5
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.5e-34 151.8 343 33.8
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 1.9e-32 146.4 129 57.4
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 7.2e-32 144.4 121 63.6
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 9.0e-27 127.5 103 64.1
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 9.0e-27 127.5 806 23.3
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.5e-26 126.7 123 54.5
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 3.4e-26 125.6 101 67.3
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 1.4e-24 120.2 56 91.1
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 6.7e-22 111.3 65 75.4
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 8.8e-22 110.9 67 77.6
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.5e-18 100.1 183 38.8
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 9.4e-16 90.9 61 80.3
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.3e-14 86.3 70 58.6
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 3.1e-11 75.9 53 62.3
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 3.1e-11 75.9 53 62.3
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 3.5e-10 72.4 34 94.1
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 1.0e-06 60.8 40 72.5
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 3.0e-06 59.3 43 60.5


User provided reference genes

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