Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1699 Fragaria x ananassa HOM05D003365 ORTHO05D003899 3.7e-125 451.8 218 100.0
FAN12G0224 Fragaria x ananassa HOM05D003365 ORTHO05D003899 9.3e-44 181.4 83 95.2
FAN12G1463 Fragaria x ananassa HOM05D003365 ORTHO05D003899 9.3e-44 181.4 83 95.2
FvH4_4g00570 Fragaria vesca HOM05D003365 ORTHO05D003899 2.3e-42 176.8 83 92.8
FAN22G2379 Fragaria x ananassa HOM05D003365 ORTHO05D003899 1.8e-39 167.2 98 79.6
RcHm_v2.0_Chr4g0386021 Rosa chinensis HOM05D003365 ORTHO05D003899 6.2e-32 142.1 83 77.1
Prupe.1G006100 Prunus persica HOM05D003365 ORTHO05D003899 1.1e-28 131.3 83 72.3
MD04G1005700 Malus domestica HOM05D003365 ORTHO05D003899 3.2e-28 129.8 84 66.7
FAN17G2156 Fragaria x ananassa HOM05D003365 ORTHO05D003899 1.2e-27 127.9 76 86.8
FAN02G1792 Fragaria x ananassa HOM05D003365 ORTHO05D003899 4.6e-27 125.9 90 76.7
Ciclev10004856m.g Citrus clementina HOM05D003365 ORTHO05D003899 3.3e-25 119.8 79 64.6
FAN20G0576 Fragaria x ananassa HOM05D003365 ORTHO05D003899 1.6e-24 117.5 69 88.4
Gohir.A09G204300 Gossypium hirsutum HOM05D003365 ORTHO05D003899 2.8e-24 116.7 88 59.1
Gohir.D09G198000 Gossypium hirsutum HOM05D003365 ORTHO05D003899 2.8e-24 116.7 88 59.1
Gorai.006G221600 Gossypium raimondii HOM05D003365 ORTHO05D003899 2.8e-24 116.7 88 59.1
CSS0049236 Camellia sinensis var. sinensis HOM05D003365 ORTHO05D003899 4.8e-24 115.9 75 69.3
Atru.chr4.1724 Acer truncatum HOM05D003365 ORTHO05D003899 8.2e-24 115.2 63 74.6
Duzib151G0831 Durio zibethinus HOM05D003365 ORTHO05D003899 8.2e-24 115.2 80 62.5
Solyc09g091790.3 Solanum lycopersicum HOM05D003365 ORTHO05D003899 1.4e-23 114.4 74 63.5
Gohir.A03G094000 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.8e-23 114.0 63 69.8
Gohir.D02G123200 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.8e-23 114.0 63 69.8
Gorai.005G131100 Gossypium raimondii HOM05D003365 ORTHO05D003899 1.8e-23 114.0 63 69.8
Sopen09g034680 Solanum pennellii HOM05D003365 ORTHO05D003899 1.8e-23 114.0 74 62.2
COL.COLO4_10278 Corchorus olitorius HOM05D003365 ORTHO05D003899 3.1e-23 113.2 88 56.8
PGSC0003DMG400029661 Solanum tuberosum HOM05D003365 ORTHO05D003899 3.1e-23 113.2 74 62.2
CAN.G500.11 Capsicum annuum HOM05D003365 ORTHO05D003899 4.1e-23 112.8 63 68.3
Nitab4.5_0002428g0050 Nicotiana tabacum HOM05D003365 ORTHO05D003899 5.3e-23 112.5 65 66.2
Oeu006726.3 Olea europaea HOM05D003365 ORTHO05D003899 1.5e-22 110.9 63 68.3
Potri.003G178700 Populus trichocarpa HOM05D003365 ORTHO05D003899 2.6e-22 110.2 72 66.7
HanXRQChr01g0022241 Helianthus annuus HOM05D003365 ORTHO05D003899 3.4e-22 109.8 68 69.1
Potri.001G049300 Populus trichocarpa HOM05D003365 ORTHO05D003899 7.6e-22 108.6 65 66.2
Sabra03G0131000 Salix brachista HOM05D003365 ORTHO05D003899 1.3e-21 107.8 72 65.3
SGA_v2.0_scaffold216G42379 Striga asiatica HOM05D003365 ORTHO05D003899 1.3e-21 107.8 83 57.8
RcHm_v2.0_Chr6g0284931 Rosa chinensis HOM05D003365 ORTHO05D003899 2.9e-21 106.7 68 63.2
Thecc.04G205700 Theobroma cacao HOM05D003365 ORTHO05D003899 2.9e-21 106.7 76 61.8
Oeu022364.1 Olea europaea HOM05D003365 ORTHO05D003899 3.8e-21 106.3 74 58.1
Migut.N00374 Erythranthe guttata HOM05D003365 ORTHO05D003899 5.0e-21 105.9 70 61.4
HanXRQChr01g0022261 Helianthus annuus HOM05D003365 ORTHO05D003899 6.5e-21 105.5 68 64.7
Manes.12G045750 Manihot esculenta HOM05D003365 ORTHO05D003899 8.5e-21 105.1 63 65.1
CiPaw.03G149600 Carya illinoinensis HOM05D003365 ORTHO05D003899 1.1e-20 104.8 83 59.0
Ciclev10023514m.g Citrus clementina HOM05D003365 ORTHO05D003899 1.4e-20 104.4 65 64.6
DCAR_018569 Daucus carota HOM05D003365 ORTHO05D003899 1.4e-20 104.4 74 59.5
MBI10_g18941_MAGBIO Magnolia biondii HOM05D003365 ORTHO05D003899 1.4e-20 104.4 68 60.3
Os02g0621500 Oryza sativa ssp. japonica HOM05D003365 ORTHO05D003899 1.4e-20 104.4 63 71.4
EL10Ac7g17831 Beta vulgaris HOM05D003365 ORTHO05D003899 3.2e-20 103.2 65 63.1
Potri.002G241900 Populus trichocarpa HOM05D003365 ORTHO05D003899 3.2e-20 103.2 63 63.5
MSTRG.24620 Avicennia marina HOM05D003365 ORTHO05D003899 4.2e-20 102.8 65 63.1
Phvul.008G125500 Phaseolus vulgaris HOM05D003365 ORTHO05D003899 7.2e-20 102.1 67 62.7
Rhsim09G0055000 Rhododendron simsii HOM05D003365 ORTHO05D003899 7.2e-20 102.1 78 59.0
Aa31sc154G60 Aethionema arabicum HOM05D003365 ORTHO05D003899 9.3e-20 101.7 63 66.7
Aqoxy2G03887 Aquilegia oxysepala HOM05D003365 ORTHO05D003899 9.3e-20 101.7 68 64.7
Carub.0003s2521 Capsella rubella HOM05D003365 ORTHO05D003899 9.3e-20 101.7 67 62.7
Gohir.A11G137500 Gossypium hirsutum HOM05D003365 ORTHO05D003899 9.3e-20 101.7 66 62.1
Gorai.007G154100 Gossypium raimondii HOM05D003365 ORTHO05D003899 9.3e-20 101.7 66 62.1
Medtr4g022320 Medicago truncatula HOM05D003365 ORTHO05D003899 9.3e-20 101.7 83 53.0
TPR.G5559 Trifolium pratense HOM05D003365 ORTHO05D003899 1.6e-19 100.9 72 58.3
HPP92_012644 Vanilla planifolia HOM05D003365 ORTHO05D003899 1.6e-19 100.9 63 63.5
Psat0s1248g0040 Pisum sativum HOM05D003365 ORTHO05D003899 2.1e-19 100.5 73 57.5
Cpa.g.sc8.160 Carica papaya HOM05D003365 ORTHO05D003899 2.7e-19 100.1 73 58.9
Nn3g19957 Nelumbo nucifera HOM05D003365 ORTHO05D003899 2.7e-19 100.1 65 63.1
VMungo1383G0959 Vigna mungo HOM05D003365 ORTHO05D003899 2.7e-19 100.1 65 61.5
Actinidia09483 Actinidia chinensis HOM05D003365 ORTHO05D003899 3.6e-19 99.8 65 64.6
Cc01_g17090 Coffea canephora HOM05D003365 ORTHO05D003899 3.6e-19 99.8 83 51.8
Gohir.D11G143900 Gossypium hirsutum HOM05D003365 ORTHO05D003899 3.6e-19 99.8 66 60.6
Sp3g22540 Schrenkiella parvula HOM05D003365 ORTHO05D003899 3.6e-19 99.8 63 63.5
SpUn0027_0020 Schrenkiella parvula HOM05D003365 ORTHO05D003899 3.6e-19 99.8 63 63.5
vmacro14754 Vaccinium macrocarpon HOM05D003365 ORTHO05D003899 4.6e-19 99.4 73 60.3
Sed0009490 Sechium edule HOM05D003365 ORTHO05D003899 6.1e-19 99.0 65 61.5
Hund05541 Selenicereus undatus HOM05D003365 ORTHO05D003899 7.9e-19 98.6 65 60.0
Hund05542 Selenicereus undatus HOM05D003365 ORTHO05D003899 7.9e-19 98.6 65 60.0
CANSAT01G3135 Cannabis sativa HOM05D003365 ORTHO05D003899 1.0e-18 98.2 65 61.5
Glyma.18G171400 Glycine max HOM05D003365 ORTHO05D003899 1.0e-18 98.2 65 61.5
MD10G1165000 Malus domestica HOM05D003365 ORTHO05D003899 1.0e-18 98.2 68 60.3
SHI01314 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-18 98.2 54 72.2
THA.LOC104804607 Tarenaya hassleriana HOM05D003365 ORTHO05D003899 1.0e-18 98.2 63 61.9
THA.LOC104808785 Tarenaya hassleriana HOM05D003365 ORTHO05D003899 1.4e-18 97.8 63 63.5
TPR.G5612 Trifolium pratense HOM05D003365 ORTHO05D003899 1.4e-18 97.8 75 57.3
Ca_30737_v3 Cicer arietinum L. HOM05D003365 ORTHO05D003899 1.8e-18 97.4 65 60.0
Lj2C1132T2 Lonicera japonica HOM05D003365 ORTHO05D003899 1.8e-18 97.4 72 55.6
Lj3g0005766 Lotus japonicus HOM05D003365 ORTHO05D003899 1.8e-18 97.4 82 53.7
PSO017G5557 Papaver somniferum HOM05D003365 ORTHO05D003899 1.8e-18 97.4 83 53.0
TWI36G1690 Tripterygium wilfordii HOM05D003365 ORTHO05D003899 1.8e-18 97.4 65 58.5
Zm00001eb247460 Zea mays HOM05D003365 ORTHO05D003899 1.8e-18 97.4 58 67.2
A07p07410 Brassica napus HOM05D003365 ORTHO05D003899 2.3e-18 97.1 81 56.8
BraA07t28528Z Brassica rapa HOM05D003365 ORTHO05D003899 2.3e-18 97.1 81 56.8
Dinv04652 Davidia involucrata HOM05D003365 ORTHO05D003899 2.3e-18 97.1 65 61.5
Thhalv10002569m.g Eutrema salsugineum HOM05D003365 ORTHO05D003899 2.3e-18 97.1 80 51.2
Sc05g0002210 Simmondsia chinensis HOM05D003365 ORTHO05D003899 2.3e-18 97.1 83 53.0
AT3G24800 Arabidopsis thaliana HOM05D003365 ORTHO05D003899 3.0e-18 96.7 67 59.7
BcaB03g14565 Brassica carinata HOM05D003365 ORTHO05D003899 3.0e-18 96.7 63 61.9
BcaC01g03254 Brassica carinata HOM05D003365 ORTHO05D003899 3.0e-18 96.7 63 61.9
A03p43940 Brassica napus HOM05D003365 ORTHO05D003899 3.0e-18 96.7 63 61.9
C03p54290 Brassica napus HOM05D003365 ORTHO05D003899 3.0e-18 96.7 63 61.9
BolC3t17715H Brassica oleracea HOM05D003365 ORTHO05D003899 3.0e-18 96.7 63 61.9
BraA03t13524Z Brassica rapa HOM05D003365 ORTHO05D003899 3.0e-18 96.7 63 61.9
AUR62008908 Chenopodium quinoa HOM05D003365 ORTHO05D003899 3.9e-18 96.3 63 60.3
Glyma.08G354400 Glycine max HOM05D003365 ORTHO05D003899 3.9e-18 96.3 65 60.0
Psat3g144800 Pisum sativum HOM05D003365 ORTHO05D003899 3.9e-18 96.3 67 56.7
Prupe.8G203400 Prunus persica HOM05D003365 ORTHO05D003899 3.9e-18 96.3 74 54.1
AL3G40570 Arabidopsis lyrata HOM05D003365 ORTHO05D003899 5.1e-18 95.9 67 59.7
CsaV3_7G025900 Cucumis sativus L. HOM05D003365 ORTHO05D003899 5.1e-18 95.9 59 64.4
ClCG09G009060 Citrullus lanatus HOM05D003365 ORTHO05D003899 8.8e-18 95.1 65 58.5
BcaB06g26698 Brassica carinata HOM05D003365 ORTHO05D003899 1.1e-17 94.7 81 54.3
Haze_24791 Corylus avellana HOM05D003365 ORTHO05D003899 1.1e-17 94.7 67 61.2
MELO3C021013.2 Cucumis melo HOM05D003365 ORTHO05D003899 1.1e-17 94.7 65 58.5
Thecc.01G226500 Theobroma cacao HOM05D003365 ORTHO05D003899 1.5e-17 94.4 83 47.0
TPR.G9032 Trifolium pratense HOM05D003365 ORTHO05D003899 1.5e-17 94.4 80 51.2
Lalb_Chr12g0209691 Lupinus albus HOM05D003365 ORTHO05D003899 1.9e-17 94.0 76 52.6
MSTRG.18389 Avicennia marina HOM05D003365 ORTHO05D003899 2.5e-17 93.6 70 55.7
Cc01_g17080 Coffea canephora HOM05D003365 ORTHO05D003899 2.5e-17 93.6 83 51.8
Nitab4.5_0004214g0020 Nicotiana tabacum HOM05D003365 ORTHO05D003899 2.5e-17 93.6 51 68.6
Sed0009580 Sechium edule HOM05D003365 ORTHO05D003899 3.3e-17 93.2 67 58.2
TWI75G0239 Tripterygium wilfordii HOM05D003365 ORTHO05D003899 3.3e-17 93.2 65 56.9
CARHR101150 Cardamine hirsuta HOM05D003365 ORTHO05D003899 5.7e-17 92.4 63 61.9
HanXRQChr15g0468271 Helianthus annuus HOM05D003365 ORTHO05D003899 5.7e-17 92.4 65 56.9
C07p11180 Brassica napus HOM05D003365 ORTHO05D003899 7.4e-17 92.0 81 54.3
Medtr7g058430 Medicago truncatula HOM05D003365 ORTHO05D003899 7.4e-17 92.0 80 50.0
arahy.Tifrunner.gnm1.ann1.2FCG8X Arachis hypogaea HOM05D003365 ORTHO05D003899 9.7e-17 91.7 67 55.2
arahy.Tifrunner.gnm1.ann1.E2CR6D Arachis hypogaea HOM05D003365 ORTHO05D003899 9.7e-17 91.7 67 55.2
Duzib138G0916 Durio zibethinus HOM05D003365 ORTHO05D003899 1.3e-16 91.3 86 47.7
Lj1g0007670 Lotus japonicus HOM05D003365 ORTHO05D003899 1.3e-16 91.3 59 59.3
Medtr7g058450 Medicago truncatula HOM05D003365 ORTHO05D003899 1.3e-16 91.3 80 48.8
BcaC06g35760 Brassica carinata HOM05D003365 ORTHO05D003899 2.2e-16 90.5 81 54.3
BolC7t41590H Brassica oleracea HOM05D003365 ORTHO05D003899 2.2e-16 90.5 81 54.3
Eucgr.K02172 Eucalyptus grandis HOM05D003365 ORTHO05D003899 2.8e-16 90.1 85 52.9
Lalb_Chr19g0125591 Lupinus albus HOM05D003365 ORTHO05D003899 3.7e-16 89.7 65 58.5
Migut.D00534 Erythranthe guttata HOM05D003365 ORTHO05D003899 6.3e-16 89.0 72 51.4
TAR365G1159 Trochodendron aralioides HOM05D003365 ORTHO05D003899 8.2e-16 88.6 50 72.0
QL09p054597 Quercus lobata HOM05D003365 ORTHO05D003899 1.1e-15 88.2 83 50.6
ATR0736G227 Amborella trichopoda HOM05D003365 ORTHO05D003899 1.4e-15 87.8 66 53.0
Pp3c1_21360 Physcomitrium patens HOM05D003365 ORTHO05D003899 3.1e-15 86.7 65 55.4
GSVIVG01028643001 Vitis vinifera HOM05D003365 ORTHO05D003899 4.1e-15 86.3 52 63.5
Aa31LG4G13410 Aethionema arabicum HOM05D003365 ORTHO05D003899 6.9e-15 85.5 59 61.0
HanXRQChr09g0249321 Helianthus annuus HOM05D003365 ORTHO05D003899 9.1e-15 85.1 64 53.1
Lsat_1_v5_gn_5_179340 Lactuca sativa HOM05D003365 ORTHO05D003899 9.1e-15 85.1 64 53.1
SEGI_11490 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 5.9e-14 82.4 68 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1757 Anthoceros agrestis HOM05D003365 ORTHO05D003899 7.7e-14 82.0 59 55.9
SEGI_15541 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 7.7e-14 82.0 68 50.0
CDE01G0789 Ceratophyllum demersum HOM05D003365 ORTHO05D003899 1.0e-13 81.6 52 65.4
SEGI_02131 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 1.0e-13 81.6 69 49.3
Pp3c2_17040 Physcomitrium patens HOM05D003365 ORTHO05D003899 1.7e-13 80.9 59 55.9
Peaxi162Scf00047g00640 Petunia axillaris HOM05D003365 ORTHO05D003899 1.4e-12 77.8 96 43.8
Oeu022255.1 Olea europaea HOM05D003365 ORTHO05D003899 5.5e-12 75.9 52 59.6
Eucgr.L00369 Eucalyptus grandis HOM05D003365 ORTHO05D003899 7.2e-12 75.5 93 45.2
Cre02.g098200 Chlamydomonas reinhardtii HOM05D003365 ORTHO05D003899 2.7e-11 73.6 64 45.3
Lsat_1_v5_gn_1_72781 Lactuca sativa HOM05D003365 ORTHO05D003899 6.1e-11 72.4 44 68.2
FvH4_2g19100 Fragaria vesca HOM05D003365 ORTHO05D003899 2.3e-10 70.5 40 70.0
Pp3c2_34310 Physcomitrium patens HOM05D003365 ORTHO05D003899 3.0e-10 70.1 57 54.4
Pp3c11_26150 Physcomitrium patens HOM05D003365 ORTHO05D003899 5.1e-10 69.3 57 50.9
ECA248G1941 Erigeron canadensis HOM05D003365 ORTHO05D000452 6.7e-10 68.9 62 46.8
MCO16G654 Micromonas commoda HOM05D003365 ORTHO05D003899 6.7e-10 68.9 59 44.1
Pp3c7_700 Physcomitrium patens HOM05D003365 ORTHO05D003899 1.5e-09 67.8 57 49.1
FAN25G0003 Fragaria x ananassa HOM05D003365 ORTHO05D003899 9.7e-09 65.1 44 81.8
CBR_g39028 Chara braunii HOM05D003365 ORTHO05D003899 8.2e-08 62.0 58 43.1


User provided reference genes

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