Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1474 Fragaria x ananassa HOM05D001300 ORTHO05D035827 9.9e-32 139.4 67 100.0
FvH4_1g25310 Fragaria vesca HOM05D001300 ORTHO05D008042 4.3e-19 97.4 48 95.8
FAN19G2852 Fragaria x ananassa HOM05D001300 ORTHO05D008042 4.3e-19 97.4 48 95.8
FAN28G1286 Fragaria x ananassa HOM05D001300 ORTHO05D008042 4.3e-19 97.4 48 95.8
QL12p012112 Quercus lobata HOM05D001300 ORTHO05D008042 1.3e-18 95.9 49 89.8
FAN26G2432 Fragaria x ananassa HOM05D001300 ORTHO05D008042 1.6e-18 95.5 48 93.8
CiPaw.11G079300 Carya illinoinensis HOM05D001300 ORTHO05D008042 2.1e-18 95.1 49 89.8
arahy.Tifrunner.gnm1.ann1.LVQ67B Arachis hypogaea HOM05D001300 ORTHO05D008042 6.2e-18 93.6 48 87.5
arahy.Tifrunner.gnm1.ann1.TF6M8M Arachis hypogaea HOM05D001300 ORTHO05D008042 8.1e-18 93.2 48 85.4
Cfa012720 Carpinus fangiana HOM05D001300 ORTHO05D008042 8.1e-18 93.2 49 85.7
Haze_07912 Corylus avellana HOM05D001300 ORTHO05D008042 8.1e-18 93.2 49 85.7
RcHm_v2.0_Chr2g0123321 Rosa chinensis HOM05D001300 ORTHO05D008042 8.1e-18 93.2 48 91.7
Ah.01g002480 Amaranthus hybridus HOM05D001300 ORTHO05D008042 1.1e-17 92.8 60 73.3
Hma1.2p1_1172F.1_g263620 Hydrangea macrophylla HOM05D001300 ORTHO05D008042 1.8e-17 92.0 48 89.6
CSS0004329 Camellia sinensis var. sinensis HOM05D001300 ORTHO05D008042 2.4e-17 91.7 48 89.6
DCAR_008493 Daucus carota HOM05D001300 ORTHO05D008042 2.4e-17 91.7 48 89.6
Dinv39148 Davidia involucrata HOM05D001300 ORTHO05D008042 2.4e-17 91.7 48 89.6
Actinidia02135 Actinidia chinensis HOM05D001300 ORTHO05D008042 3.1e-17 91.3 48 89.6
MSTRG.25522 Avicennia marina HOM05D001300 ORTHO05D008042 3.1e-17 91.3 48 87.5
Eucgr.D02080 Eucalyptus grandis HOM05D001300 ORTHO05D008042 5.3e-17 90.5 49 85.7
HanXRQChr03g0087741 Helianthus annuus HOM05D001300 ORTHO05D008042 5.3e-17 90.5 48 87.5
Lj2C218G3 Lonicera japonica HOM05D001300 ORTHO05D008042 5.3e-17 90.5 48 87.5
Rhsim06G0183900 Rhododendron simsii HOM05D001300 ORTHO05D008042 5.3e-17 90.5 48 87.5
TAR636G2634 Trochodendron aralioides HOM05D001300 ORTHO05D008042 5.3e-17 90.5 48 87.5
ATR0564G540 Amborella trichopoda HOM05D001300 ORTHO05D008042 6.9e-17 90.1 48 85.4
Migut.A00956 Erythranthe guttata HOM05D001300 ORTHO05D008042 6.9e-17 90.1 48 87.5
Lsat_1_v5_gn_6_90981 Lactuca sativa HOM05D001300 ORTHO05D008042 6.9e-17 90.1 48 85.4
MD06G1059300 Malus domestica HOM05D001300 ORTHO05D008042 6.9e-17 90.1 48 87.5
Duzib136G0002 Durio zibethinus HOM05D001300 ORTHO05D008042 9.0e-17 89.7 48 85.4
Duzib205G1000 Durio zibethinus HOM05D001300 ORTHO05D008042 9.0e-17 89.7 48 85.4
PSO339G5537 Papaver somniferum HOM05D001300 ORTHO05D008042 9.0e-17 89.7 48 83.3
PSO384G2227 Papaver somniferum HOM05D001300 ORTHO05D008042 9.0e-17 89.7 48 83.3
Thecc.03G250800 Theobroma cacao HOM05D001300 ORTHO05D008042 9.0e-17 89.7 48 85.4
Hund14538 Selenicereus undatus HOM05D001300 ORTHO05D008042 1.2e-16 89.4 50 80.0
Sc01g0008430 Simmondsia chinensis HOM05D001300 ORTHO05D008042 1.2e-16 89.4 53 77.4
Atru.chr10.1120 Acer truncatum HOM05D001300 ORTHO05D008042 1.5e-16 89.0 48 85.4
Nitab4.5_0007717g0040 Nicotiana tabacum HOM05D001300 ORTHO05D008042 1.5e-16 89.0 51 78.4
THA.LOC104809571 Tarenaya hassleriana HOM05D001300 ORTHO05D008042 1.5e-16 89.0 49 81.6
TWI60G0922 Tripterygium wilfordii HOM05D001300 ORTHO05D008042 1.5e-16 89.0 48 81.2
TWI81G0455 Tripterygium wilfordii HOM05D001300 ORTHO05D008042 1.5e-16 89.0 48 83.3
ECA240G1278 Erigeron canadensis HOM05D001300 ORTHO05D008042 2.0e-16 88.6 48 85.4
SalBow6G0445 Salvia bowleyana HOM05D001300 ORTHO05D008042 2.0e-16 88.6 48 85.4
vmacro12026 Vaccinium macrocarpon HOM05D001300 ORTHO05D008042 2.0e-16 88.6 48 85.4
Aqoxy5G01840 Aquilegia oxysepala HOM05D001300 ORTHO05D008042 2.6e-16 88.2 48 83.3
EL10Ac9g22659 Beta vulgaris HOM05D001300 ORTHO05D008042 2.6e-16 88.2 48 83.3
CANSAT21G1584 Cannabis sativa HOM05D001300 ORTHO05D008042 4.5e-16 87.4 48 83.3
Glyma.17G142000 Glycine max HOM05D001300 ORTHO05D008042 4.5e-16 87.4 47 80.9
Ciclev10019519m.g Citrus clementina HOM05D001300 ORTHO05D008042 5.8e-16 87.0 48 83.3
AL7G37410 Arabidopsis lyrata HOM05D001300 ORTHO05D008042 7.6e-16 86.7 49 77.6
COL.COLO4_37172 Corchorus olitorius HOM05D001300 ORTHO05D008042 7.6e-16 86.7 48 81.2
Oeu002335.1 Olea europaea HOM05D001300 ORTHO05D008042 7.6e-16 86.7 47 83.0
GSVIVG01004706001 Vitis vinifera HOM05D001300 ORTHO05D008042 7.6e-16 86.7 48 83.3
Oeu040200.1 Olea europaea HOM05D001300 ORTHO05D035827 9.9e-16 86.3 47 85.1
Psat4g072280 Pisum sativum HOM05D001300 ORTHO05D008042 9.9e-16 86.3 51 72.5
Sabra17G0017400 Salix brachista HOM05D001300 ORTHO05D008042 9.9e-16 86.3 48 81.2
TPR.G37633 Trifolium pratense HOM05D001300 ORTHO05D008042 9.9e-16 86.3 51 72.5
BcaC09g50462 Brassica carinata HOM05D001300 ORTHO05D008042 1.7e-15 85.5 49 77.6
A01p20060 Brassica napus HOM05D001300 ORTHO05D008042 1.7e-15 85.5 49 77.6
C01p25200 Brassica napus HOM05D001300 ORTHO05D008042 1.7e-15 85.5 49 77.6
BolC1t02469H Brassica oleracea HOM05D001300 ORTHO05D008042 1.7e-15 85.5 49 77.6
CDE02G2296 Ceratophyllum demersum HOM05D001300 ORTHO05D008042 1.7e-15 85.5 51 72.5
Ca_21967_v3 Cicer arietinum L. HOM05D001300 ORTHO05D008042 1.7e-15 85.5 47 76.6
Lj4g0018864 Lotus japonicus HOM05D001300 ORTHO05D008042 1.7e-15 85.5 50 74.0
Nn6g33956 Nelumbo nucifera HOM05D001300 ORTHO05D008042 1.7e-15 85.5 48 79.2
Phvul.003G220700 Phaseolus vulgaris HOM05D001300 ORTHO05D008042 1.7e-15 85.5 47 80.9
Prupe.5G070100 Prunus persica HOM05D001300 ORTHO05D008042 1.7e-15 85.5 48 83.3
Solyc03g019940.4 Solanum lycopersicum HOM05D001300 ORTHO05D008042 1.7e-15 85.5 48 79.2
Sopen03g029680 Solanum pennellii HOM05D001300 ORTHO05D008042 1.7e-15 85.5 48 79.2
PGSC0003DMG400015215 Solanum tuberosum HOM05D001300 ORTHO05D008042 1.7e-15 85.5 48 79.2
SGA_v2.0_scaffold170G38769 Striga asiatica HOM05D001300 ORTHO05D008042 1.7e-15 85.5 48 81.2
Aa31LG6G70 Aethionema arabicum HOM05D001300 ORTHO05D008042 2.2e-15 85.1 49 75.5
BcaB04g18409 Brassica carinata HOM05D001300 ORTHO05D008042 2.2e-15 85.1 49 75.5
A08p12980 Brassica napus HOM05D001300 ORTHO05D008042 2.2e-15 85.1 49 75.5
BraA08t33281Z Brassica rapa HOM05D001300 ORTHO05D008042 2.2e-15 85.1 49 75.5
Glyma.05G059500 Glycine max HOM05D001300 ORTHO05D008042 2.2e-15 85.1 46 80.4
Medtr4g100920 Medicago truncatula HOM05D001300 ORTHO05D008042 2.2e-15 85.1 51 70.6
Nitab4.5_0001495g0030 Nicotiana tabacum HOM05D001300 ORTHO05D008042 2.2e-15 85.1 50 76.0
PGR031G3009 Punica granatum HOM05D001300 ORTHO05D008042 2.2e-15 85.1 49 75.5
AUR62042796 Chenopodium quinoa HOM05D001300 ORTHO05D008042 2.9e-15 84.7 48 79.2
AUR62044033 Chenopodium quinoa HOM05D001300 ORTHO05D008042 2.9e-15 84.7 48 79.2
ClCG10G002680 Citrullus lanatus HOM05D001300 ORTHO05D008042 2.9e-15 84.7 48 79.2
Gohir.A09G196200 Gossypium hirsutum HOM05D001300 ORTHO05D008042 2.9e-15 84.7 48 81.2
Gorai.006G213600 Gossypium raimondii HOM05D001300 ORTHO05D008042 2.9e-15 84.7 48 81.2
Potri.017G028800 Populus trichocarpa HOM05D001300 ORTHO05D008042 2.9e-15 84.7 48 77.1
CARHR223920 Cardamine hirsuta HOM05D001300 ORTHO05D008042 3.8e-15 84.3 48 77.1
MELO3C013939.2 Cucumis melo HOM05D001300 ORTHO05D008042 3.8e-15 84.3 48 79.2
CsaV3_3G002710 Cucumis sativus L. HOM05D001300 ORTHO05D008042 3.8e-15 84.3 48 79.2
Lalb_Chr09g0330101 Lupinus albus HOM05D001300 ORTHO05D008042 3.8e-15 84.3 47 78.7
Sed0005108 Sechium edule HOM05D001300 ORTHO05D008042 3.8e-15 84.3 48 77.1
BraA01t01930Z Brassica rapa HOM05D001300 ORTHO05D008042 4.9e-15 84.0 49 75.5
Sp7g16870 Schrenkiella parvula HOM05D001300 ORTHO05D008042 4.9e-15 84.0 49 73.5
BcaNung00103 Brassica carinata HOM05D001300 ORTHO05D008042 6.4e-15 83.6 49 75.5
Gohir.D09G190800 Gossypium hirsutum HOM05D001300 ORTHO05D008042 6.4e-15 83.6 48 79.2
Manes.01G080800 Manihot esculenta HOM05D001300 ORTHO05D008042 6.4e-15 83.6 48 79.2
Potri.007G129800 Populus trichocarpa HOM05D001300 ORTHO05D008042 6.4e-15 83.6 48 79.2
Sabra07G0105700 Salix brachista HOM05D001300 ORTHO05D008042 6.4e-15 83.6 48 79.2
AT4G17300 Arabidopsis thaliana HOM05D001300 ORTHO05D008042 8.4e-15 83.2 48 77.1
CAN.G861.31 Capsicum annuum HOM05D001300 ORTHO05D008042 8.4e-15 83.2 48 75.0
unitig_61.g26184 Utricularia gibba HOM05D001300 ORTHO05D008042 8.4e-15 83.2 48 77.1
Carub.0007s2410 Capsella rubella HOM05D001300 ORTHO05D008042 1.1e-14 82.8 48 75.0
BcaC07g38041 Brassica carinata HOM05D001300 ORTHO05D008042 1.4e-14 82.4 49 73.5
BcaC07g38044 Brassica carinata HOM05D001300 ORTHO05D008042 1.4e-14 82.4 49 73.5
BolC8t48447H Brassica oleracea HOM05D001300 ORTHO05D008042 1.4e-14 82.4 49 73.5
Thhalv10024799m.g Eutrema salsugineum HOM05D001300 ORTHO05D008042 1.4e-14 82.4 49 69.4
AUR62007518 Chenopodium quinoa HOM05D001300 ORTHO05D008042 1.9e-14 82.0 48 77.1
Cc08_g12400 Coffea canephora HOM05D001300 ORTHO05D008042 5.5e-14 80.5 48 77.1
FAN15G1547 Fragaria x ananassa HOM05D001300 ORTHO05D035827 1.6e-13 79.0 81 60.5
HPP92_014487 Vanilla planifolia HOM05D001300 ORTHO05D008042 4.6e-13 77.4 51 64.7
MBI04_g46437_MAGBIO Magnolia biondii HOM05D001300 ORTHO05D008042 1.0e-12 76.3 51 72.5
Zm00001eb321560 Zea mays HOM05D001300 ORTHO05D008042 1.8e-12 75.5 47 70.2
MBI04_g09502_MAGBIO Magnolia biondii HOM05D001300 ORTHO05D008042 1.9e-11 72.0 64 59.4
Mapoly0056s0024 Marchantia polymorpha HOM05D001300 ORTHO05D008042 1.9e-11 72.0 48 66.7
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 9.6e-11 69.7 42 76.2
Pp3c1_35170 Physcomitrium patens HOM05D001300 ORTHO05D008042 1.3e-10 69.3 49 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3265 Anthoceros agrestis HOM05D001300 ORTHO05D008042 2.9e-07 58.2 48 47.9
Mapoly0043s0090 Marchantia polymorpha HOM05D001300 ORTHO05D004991 3.2e-06 54.7 46 50.0
VMungo0251G0807 Vigna mungo HOM05D001300 ORTHO05D008042 7.1e-06 53.5 47 55.3


User provided reference genes

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