Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0745 Fragaria x ananassa HOM05D004376 ORTHO05D005304 4.1e-176 621.3 321 100.0
FAN18G3357 Fragaria x ananassa HOM05D004376 ORTHO05D005304 1.3e-41 174.5 120 83.3
FvH4_4g09040 Fragaria vesca HOM05D004376 ORTHO05D005304 6.8e-38 162.2 135 66.7
RcHm_v2.0_Chr6g0303831 Rosa chinensis HOM05D004376 ORTHO05D005304 5.8e-21 105.9 58 84.5
FAN27G0101 Fragaria x ananassa HOM05D004376 ORTHO05D005304 6.4e-20 102.4 56 83.9
vmacro04385 Vaccinium macrocarpon HOM05D004376 ORTHO05D005304 8.4e-20 102.1 51 90.2
MSTRG.25283 Avicennia marina HOM05D004376 ORTHO05D005304 1.1e-19 101.7 52 88.5
CiPaw.07G142200 Carya illinoinensis HOM05D004376 ORTHO05D005304 1.9e-19 100.9 59 78.0
ClCG05G015300 Citrullus lanatus HOM05D004376 ORTHO05D005304 2.4e-19 100.5 52 86.5
Cfa014026 Carpinus fangiana HOM05D004376 ORTHO05D005304 3.2e-19 100.1 59 78.0
Haze_22730 Corylus avellana HOM05D004376 ORTHO05D005304 3.2e-19 100.1 59 78.0
Thecc.10G086100 Theobroma cacao HOM05D004376 ORTHO05D005304 3.2e-19 100.1 59 78.0
arahy.Tifrunner.gnm1.ann1.B15N49 Arachis hypogaea HOM05D004376 ORTHO05D005304 4.2e-19 99.8 51 86.3
arahy.Tifrunner.gnm1.ann1.CAQ3WI Arachis hypogaea HOM05D004376 ORTHO05D005304 4.2e-19 99.8 51 86.3
FAN15G0873 Fragaria x ananassa HOM05D004376 ORTHO05D005304 5.4e-19 99.4 55 83.6
Glyma.19G018000 Glycine max HOM05D004376 ORTHO05D005304 5.4e-19 99.4 51 88.2
Medtr4g131220 Medicago truncatula HOM05D004376 ORTHO05D005304 5.4e-19 99.4 100 57.0
Medtr4g131270 Medicago truncatula HOM05D004376 ORTHO05D005304 5.4e-19 99.4 100 57.0
COL.COLO4_36544 Corchorus olitorius HOM05D004376 ORTHO05D005304 7.1e-19 99.0 59 76.3
VMungo1215G0405 Vigna mungo HOM05D004376 ORTHO05D005304 7.1e-19 99.0 51 88.2
Phvul.003G157400 Phaseolus vulgaris HOM05D004376 ORTHO05D005304 9.3e-19 98.6 51 86.3
SGA_v2.0_scaffold351G49653 Striga asiatica HOM05D004376 ORTHO05D005304 9.3e-19 98.6 52 86.5
Medtr4g131205 Medicago truncatula HOM05D004376 ORTHO05D005304 1.2e-18 98.2 51 88.2
Psat4g008680 Pisum sativum HOM05D004376 ORTHO05D005304 1.6e-18 97.8 51 88.2
Hund17272 Selenicereus undatus HOM05D004376 ORTHO05D005304 1.6e-18 97.8 57 77.2
TPR.G4183 Trifolium pratense HOM05D004376 ORTHO05D005304 1.6e-18 97.8 51 88.2
Migut.C00912 Erythranthe guttata HOM05D004376 ORTHO05D005304 2.1e-18 97.4 52 80.8
Lj4C16G12 Lonicera japonica HOM05D004376 ORTHO05D005304 2.1e-18 97.4 52 82.7
Glyma.02G202300 Glycine max HOM05D004376 ORTHO05D005304 2.7e-18 97.1 47 93.6
Prupe.1G357900 Prunus persica HOM05D004376 ORTHO05D005304 2.7e-18 97.1 54 83.3
Sc19g0001720 Simmondsia chinensis HOM05D004376 ORTHO05D005304 2.7e-18 97.1 57 78.9
unitig_26.g9890 Utricularia gibba HOM05D004376 ORTHO05D005304 2.7e-18 97.1 51 86.3
Oeu021477.1 Olea europaea HOM05D004376 ORTHO05D005304 3.5e-18 96.7 52 84.6
Sabra05G0190800 Salix brachista HOM05D004376 ORTHO05D005304 3.5e-18 96.7 52 82.7
Duzib106G0676 Durio zibethinus HOM05D004376 ORTHO05D005304 4.6e-18 96.3 59 74.6
FvH4_5g07491 Fragaria vesca HOM05D004376 ORTHO05D005304 4.6e-18 96.3 95 65.3
Lsat_1_v5_gn_2_5561 Lactuca sativa HOM05D004376 ORTHO05D005304 4.6e-18 96.3 52 82.7
Lalb_Chr07g0179761 Lupinus albus HOM05D004376 ORTHO05D005304 4.6e-18 96.3 51 86.3
Lalb_Chr12g0198601 Lupinus albus HOM05D004376 ORTHO05D005304 4.6e-18 96.3 51 86.3
Sed0015523 Sechium edule HOM05D004376 ORTHO05D005304 4.6e-18 96.3 59 74.6
SGA_v2.0_scaffold275G46548 Striga asiatica HOM05D004376 ORTHO05D005304 4.6e-18 96.3 52 84.6
CDE06G1859 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 6.0e-18 95.9 58 75.9
Manes.18G008300 Manihot esculenta HOM05D004376 ORTHO05D005304 6.0e-18 95.9 56 78.6
Oeu053188.1 Olea europaea HOM05D004376 ORTHO05D005304 6.0e-18 95.9 52 84.6
Atru.chr13.190 Acer truncatum HOM05D004376 ORTHO05D005304 7.8e-18 95.5 50 86.0
Actinidia37959 Actinidia chinensis HOM05D004376 ORTHO05D005304 7.8e-18 95.5 49 85.7
Eucgr.F01708 Eucalyptus grandis HOM05D004376 ORTHO05D005304 7.8e-18 95.5 59 76.3
Gohir.A06G168500 Gossypium hirsutum HOM05D004376 ORTHO05D005304 7.8e-18 95.5 59 72.9
Gohir.D06G176200 Gossypium hirsutum HOM05D004376 ORTHO05D005304 7.8e-18 95.5 59 72.9
Gorai.010G207100 Gossypium raimondii HOM05D004376 ORTHO05D005304 7.8e-18 95.5 59 72.9
Nn5g30880 Nelumbo nucifera HOM05D004376 ORTHO05D005304 7.8e-18 95.5 47 93.6
Sed0022390 Sechium edule HOM05D004376 ORTHO05D005304 7.8e-18 95.5 51 84.3
TWI36G0200 Tripterygium wilfordii HOM05D004376 ORTHO05D005304 7.8e-18 95.5 49 87.8
TAR628G0340 Trochodendron aralioides HOM05D004376 ORTHO05D005304 7.8e-18 95.5 52 82.7
CDE02G0983 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 1.0e-17 95.1 58 74.1
AUR62019106 Chenopodium quinoa HOM05D004376 ORTHO05D005304 1.0e-17 95.1 49 87.8
Ca_21112_v3 Cicer arietinum L. HOM05D004376 ORTHO05D005304 1.0e-17 95.1 51 84.3
QL02p013385 Quercus lobata HOM05D004376 ORTHO05D005304 1.0e-17 95.1 54 79.6
Aqoxy6G01883 Aquilegia oxysepala HOM05D004376 ORTHO05D005304 1.3e-17 94.7 52 80.8
EL10Ac1g00494 Beta vulgaris HOM05D004376 ORTHO05D005304 1.3e-17 94.7 50 88.0
AUR62014364 Chenopodium quinoa HOM05D004376 ORTHO05D005304 1.3e-17 94.7 49 85.7
MELO3C017001.2 Cucumis melo HOM05D004376 ORTHO05D005304 1.3e-17 94.7 47 91.5
CsaV3_4G037020 Cucumis sativus L. HOM05D004376 ORTHO05D005304 1.3e-17 94.7 47 91.5
Ah.05g171420 Amaranthus hybridus HOM05D004376 ORTHO05D005304 1.7e-17 94.4 49 85.7
Lj4g0015297 Lotus japonicus HOM05D004376 ORTHO05D005304 1.7e-17 94.4 51 84.3
Nitab4.5_0003280g0050 Nicotiana tabacum HOM05D004376 ORTHO05D005304 1.7e-17 94.4 59 71.2
PGR083G0927 Punica granatum HOM05D004376 ORTHO05D005304 1.7e-17 94.4 59 72.9
CDE06G1209 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 2.3e-17 94.0 58 74.1
ECA238G2008 Erigeron canadensis HOM05D004376 ORTHO05D005304 2.3e-17 94.0 49 87.8
CANSAT25G0081 Cannabis sativa HOM05D004376 ORTHO05D005304 3.0e-17 93.6 56 76.8
SHI08024 Sapria himalayana HOM05D004376 ORTHO05D005304 3.0e-17 93.6 59 72.9
CAN.G311.86 Capsicum annuum HOM05D004376 ORTHO05D005304 3.9e-17 93.2 59 69.5
CSS0003340 Camellia sinensis var. sinensis HOM05D004376 ORTHO05D005304 5.1e-17 92.8 49 83.7
CSS0022497 Camellia sinensis var. sinensis HOM05D004376 ORTHO05D005304 5.1e-17 92.8 49 83.7
Solyc04g082070.4 Solanum lycopersicum HOM05D004376 ORTHO05D005304 5.1e-17 92.8 52 78.8
Sopen04g035720 Solanum pennellii HOM05D004376 ORTHO05D005304 5.1e-17 92.8 52 78.8
PGSC0003DMG400009961 Solanum tuberosum HOM05D004376 ORTHO05D005304 5.1e-17 92.8 52 78.8
Potri.002G014400 Populus trichocarpa HOM05D004376 ORTHO05D005304 6.6e-17 92.4 47 87.2
Peaxi162Scf00174g01119 Petunia axillaris HOM05D004376 ORTHO05D005304 1.1e-16 91.7 59 67.8
Ciclev10000838m.g Citrus clementina HOM05D004376 ORTHO05D005304 1.5e-16 91.3 52 78.8
HanXRQChr06g0184861 Helianthus annuus HOM05D004376 ORTHO05D005304 1.9e-16 90.9 52 80.8
SalBow7G0439 Salvia bowleyana HOM05D004376 ORTHO05D005304 2.5e-16 90.5 49 79.6
Potri.005G247000 Populus trichocarpa HOM05D004376 ORTHO05D005304 3.3e-16 90.1 50 80.0
DCAR_023004 Daucus carota HOM05D004376 ORTHO05D005304 5.6e-16 89.4 49 81.6
PSO541G0445 Papaver somniferum HOM05D004376 ORTHO05D005304 7.3e-16 89.0 52 75.0
PSO675G7961 Papaver somniferum HOM05D004376 ORTHO05D005304 7.3e-16 89.0 52 75.0
THA.LOC104813770 Tarenaya hassleriana HOM05D004376 ORTHO05D005304 1.6e-15 87.8 52 73.1
MBI05_g12852_MAGBIO Magnolia biondii HOM05D004376 ORTHO05D005304 2.8e-15 87.0 50 76.0
Zm00001eb250100 Zea mays HOM05D004376 ORTHO05D005304 2.8e-15 87.0 59 66.1
Os02g0668400 Oryza sativa ssp. japonica HOM05D004376 ORTHO05D005304 3.6e-15 86.7 56 69.6
Carub.0001s1987 Capsella rubella HOM05D004376 ORTHO05D005304 4.8e-15 86.3 52 73.1
Aa31LG7G4710 Aethionema arabicum HOM05D004376 ORTHO05D005304 6.2e-15 85.9 59 64.4
DCAR_016746 Daucus carota HOM05D004376 ORTHO05D005304 8.1e-15 85.5 49 75.5
BcaC05g25947 Brassica carinata HOM05D004376 ORTHO05D005304 1.1e-14 85.1 49 77.6
A06p16450 Brassica napus HOM05D004376 ORTHO05D005304 1.1e-14 85.1 49 77.6
C05p18990 Brassica napus HOM05D004376 ORTHO05D005304 1.1e-14 85.1 49 77.6
BolC5t30599H Brassica oleracea HOM05D004376 ORTHO05D005304 1.1e-14 85.1 49 77.6
BraA06t24749Z Brassica rapa HOM05D004376 ORTHO05D005304 1.1e-14 85.1 49 77.6
AL1G33290 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 2.4e-14 84.0 49 75.5
Sp1g18110 Schrenkiella parvula HOM05D004376 ORTHO05D005304 2.4e-14 84.0 49 75.5
ATR0661G260 Amborella trichopoda HOM05D004376 ORTHO05D005304 3.1e-14 83.6 80 53.8
Thhalv10007295m.g Eutrema salsugineum HOM05D004376 ORTHO05D005304 3.1e-14 83.6 47 78.7
HPP92_021052 Vanilla planifolia HOM05D004376 ORTHO05D005304 4.0e-14 83.2 50 72.0
AL1G33250 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 5.3e-14 82.8 49 73.5
AT1G20370 Arabidopsis thaliana HOM05D004376 ORTHO05D005304 5.3e-14 82.8 49 73.5
BcaB07g32040 Brassica carinata HOM05D004376 ORTHO05D005304 5.3e-14 82.8 46 80.4
Sp5g31240 Schrenkiella parvula HOM05D004376 ORTHO05D005304 1.2e-13 81.6 54 68.5
Thhalv10018512m.g Eutrema salsugineum HOM05D004376 ORTHO05D005304 2.6e-13 80.5 56 62.5
BcaC08g47105 Brassica carinata HOM05D004376 ORTHO05D005304 3.4e-13 80.1 47 76.6
Aa31LG4G6240 Aethionema arabicum HOM05D004376 ORTHO05D005304 5.8e-13 79.3 50 68.0
AL2G36160 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 9.9e-13 78.6 52 67.3
AT1G76120 Arabidopsis thaliana HOM05D004376 ORTHO05D005304 9.9e-13 78.6 52 67.3
CARHR069660 Cardamine hirsuta HOM05D004376 ORTHO05D005304 1.3e-12 78.2 59 59.3
SEGI_08421 Sequoiadendron giganteum HOM05D004376 ORTHO05D005304 2.2e-12 77.4 44 77.3
Carub.0002s2300 Capsella rubella HOM05D004376 ORTHO05D005304 6.4e-12 75.9 52 65.4
C06p50060 Brassica napus HOM05D004376 ORTHO05D005304 1.4e-11 74.7 54 63.0
BcaC08g47290 Brassica carinata HOM05D004376 ORTHO05D005304 1.9e-11 74.3 54 61.1
BcaNung05111 Brassica carinata HOM05D004376 ORTHO05D005304 1.9e-11 74.3 54 61.1
BcaNung05112 Brassica carinata HOM05D004376 ORTHO05D005304 1.9e-11 74.3 54 61.1
BolC6t40045H Brassica oleracea HOM05D004376 ORTHO05D005304 1.9e-11 74.3 54 61.1
BraA07t31697Z Brassica rapa HOM05D004376 ORTHO05D005304 1.9e-11 74.3 46 71.7
A07p41680 Brassica napus HOM05D004376 ORTHO05D005304 4.2e-11 73.2 46 71.7
AagrBONN_evm.TU.Sc2ySwM_228.5747 Anthoceros agrestis HOM05D004376 ORTHO05D005304 1.2e-10 71.6 79 48.1
Mapoly0057s0025 Marchantia polymorpha HOM05D004376 ORTHO05D005304 3.5e-10 70.1 49 57.1
Mapoly0001s0557 Marchantia polymorpha HOM05D004376 ORTHO05D005304 1.0e-09 68.6 51 51.0
CBR_g17013 Chara braunii HOM05D004376 ORTHO05D005304 6.7e-09 65.9 48 58.3
SMO270G0142 Selaginella moellendorffii HOM05D004376 ORTHO05D005304 8.7e-09 65.5 74 47.3
Actinidia29774 Actinidia chinensis HOM05D004376 ORTHO05D005304 1.5e-08 64.7 54 55.6
Pp3c5_14220 Physcomitrium patens HOM05D004376 ORTHO05D005304 7.4e-08 62.4 44 56.8
GSVIVG01008716001 Vitis vinifera HOM05D004376 ORTHO05D005304 8.1e-07 58.9 29 89.7
MCO12G479 Micromonas commoda HOM05D004376 ORTHO05D005304 1.4e-06 58.2 44 56.8
SMO301G0050 Selaginella moellendorffii HOM05D004376 ORTHO05D005304 1.4e-06 58.2 37 64.9
PRCOL_00003413 Prasinoderma coloniale HOM05D004376 ORTHO05D005304 1.8e-06 57.8 45 51.1
Cc10_g00930 Coffea canephora HOM05D004376 ORTHO05D005304 4.0e-06 56.6 29 86.2


User provided reference genes

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