Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.5e-180 634.8 311 100.0
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.5e-172 608.2 311 96.5
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 8.9e-152 540.4 311 88.1
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.5e-151 539.7 311 87.8
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.9e-128 461.1 311 78.1
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.5e-122 443.4 311 75.2
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 3.5e-87 325.9 306 59.2
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 3.1e-72 276.2 323 50.8
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.5e-69 266.5 350 48.3
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.2e-64 249.6 363 45.7
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 5.4e-64 248.8 320 47.5
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.6e-61 238.8 313 48.2
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 3.1e-59 233.0 323 48.0
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.0e-59 232.6 364 44.5
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.5e-58 230.7 329 46.2
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 4.9e-57 225.7 329 45.3
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 1.5e-45 187.6 281 45.6
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 7.1e-40 168.7 313 39.3
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 2.7e-39 166.8 313 39.0
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.4e-32 144.4 285 35.4
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.9e-32 144.1 275 39.6
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 2.4e-32 143.7 297 35.7
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 3.2e-32 143.3 355 34.9
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 3.5e-31 139.8 289 37.7
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 1.3e-30 137.9 359 33.1
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 8.7e-30 135.2 341 32.3
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.5e-29 134.4 279 36.2
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 7.3e-29 132.1 297 35.0
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 9.6e-29 131.7 304 35.2
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 2.1e-28 130.6 279 34.8
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 1.4e-27 127.9 305 32.1
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.4e-27 127.9 201 39.3
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 3.1e-27 126.7 321 33.6
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 5.3e-27 125.9 336 30.7
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 6.9e-27 125.6 283 32.9
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.5e-26 124.4 317 31.5
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 2.6e-26 123.6 254 33.9
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 7.6e-26 122.1 280 33.9
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.3e-25 121.3 285 33.0
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 2.2e-25 120.6 212 40.1
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 2.9e-25 120.2 339 31.0
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 3.8e-25 119.8 283 31.4
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 4.9e-25 119.4 283 31.1
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 6.4e-25 119.0 305 30.2
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 6.4e-25 119.0 295 30.2
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.9e-24 117.5 341 28.4
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 3.2e-24 116.7 283 32.9
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 5.4e-24 115.9 349 29.5
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 5.4e-24 115.9 350 29.1
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 7.1e-24 115.5 347 29.7
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 9.3e-24 115.2 295 31.2
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.2e-23 114.8 292 30.1
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.6e-23 114.4 277 32.5
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 2.1e-23 114.0 277 32.5
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.1e-23 114.0 277 32.5
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 2.1e-23 114.0 319 31.3
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 3.5e-23 113.2 347 28.2
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.6e-23 112.8 224 37.1
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 6.0e-23 112.5 273 32.2
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 6.0e-23 112.5 273 32.2
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 7.9e-23 112.1 212 35.4
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.0e-22 111.7 314 31.2
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.7e-22 110.9 179 39.1
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 1.7e-22 110.9 286 31.5
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.3e-22 110.5 297 33.7
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 5.1e-22 109.4 277 32.1
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 6.6e-22 109.0 292 30.1
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 8.7e-22 108.6 210 37.6
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.1e-21 108.2 329 29.5
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.9e-21 107.5 222 34.2
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.9e-21 107.5 204 36.8
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.5e-21 107.1 221 34.8
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 5.6e-21 105.9 317 30.3
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 7.3e-21 105.5 323 28.8
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 9.6e-21 105.1 218 35.3
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 9.6e-21 105.1 329 29.5
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 3.6e-20 103.2 233 30.5
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 3.1e-19 100.1 327 27.5
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 9.0e-19 98.6 215 34.0
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 3.4e-18 96.7 297 27.9
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 5.8e-18 95.9 323 27.2
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 7.6e-18 95.5 323 26.9
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.3e-17 94.7 127 46.5
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 1.7e-17 94.4 188 34.0
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 1.7e-17 94.4 176 33.0
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 2.9e-17 93.6 307 28.3
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.8e-17 93.2 207 33.3
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 6.4e-17 92.4 219 32.9
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 1.4e-16 91.3 188 36.7
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.9e-16 90.9 230 32.2
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 2.4e-16 90.5 214 30.8
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 3.2e-16 90.1 184 35.9
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 4.2e-16 89.7 325 26.8
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 1.2e-15 88.2 212 33.0
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.2e-15 88.2 357 25.5
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 1.6e-15 87.8 186 37.1
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 2.1e-15 87.4 176 35.8
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 2.7e-15 87.0 213 31.0
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 3.5e-15 86.7 225 32.9
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 6.0e-15 85.9 242 28.9
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 7.9e-15 85.5 308 26.0
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 2.5e-13 80.5 162 34.0
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 4.8e-12 76.3 183 37.7
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.1e-11 73.6 163 31.3
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 3.1e-11 73.6 193 28.0
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.5e-10 71.2 232 31.9
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 3.4e-10 70.1 190 28.9
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 1.0e-09 68.6 132 37.1
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 1.7e-09 67.8 185 27.6
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 2.2e-09 67.4 173 28.3
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 2.2e-09 67.4 207 27.5
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 4.9e-09 66.2 72 48.6
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 4.9e-09 66.2 145 35.2
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 6.5e-09 65.9 206 27.2
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 8.4e-09 65.5 181 32.0
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 1.9e-08 64.3 197 27.9
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.9e-08 64.3 182 28.0
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 3.2e-08 63.5 195 27.7
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 4.2e-08 63.2 173 28.9
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 4.2e-08 63.2 194 29.9
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 4.2e-08 63.2 194 29.9
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 4.2e-08 63.2 173 28.9
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 4.2e-08 63.2 208 26.4
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 4.2e-08 63.2 194 29.9
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 5.5e-08 62.8 173 30.1
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 9.3e-08 62.0 117 36.8
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 9.3e-08 62.0 117 36.8
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 9.3e-08 62.0 121 36.4
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.2e-07 61.6 208 26.9
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.2e-07 61.6 206 26.7
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 1.6e-07 61.2 218 26.6
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.6e-07 61.2 63 47.6
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 2.1e-07 60.8 205 26.8
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 2.7e-07 60.5 173 30.1
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 3.5e-07 60.1 173 27.2
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 3.5e-07 60.1 52 55.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 4.6e-07 59.7 181 28.7
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 7.9e-07 58.9 228 26.3
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 7.9e-07 58.9 216 25.0
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.0e-06 58.5 211 26.1
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.3e-06 58.2 183 25.7
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 1.3e-06 58.2 174 26.4
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 1.3e-06 58.2 201 26.4
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 2.3e-06 57.4 69 44.9
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.3e-06 57.4 173 27.7
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.3e-06 57.4 207 26.6
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 2.3e-06 57.4 143 30.8
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 3.9e-06 56.6 176 25.0
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 5.1e-06 56.2 196 25.0
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 5.1e-06 56.2 143 30.1
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 5.1e-06 56.2 152 29.6
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 6.7e-06 55.8 173 26.0
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 6.7e-06 55.8 194 26.8
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 6.7e-06 55.8 147 29.9
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 8.7e-06 55.5 174 24.7
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 8.7e-06 55.5 201 24.9
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 8.7e-06 55.5 185 23.8


User provided reference genes

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