Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-103 379.8 208 100.0
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.5e-98 360.5 213 94.4
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.5e-98 360.5 213 94.4
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.5e-98 360.5 213 93.9
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-97 359.8 213 94.4
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.2e-97 358.6 213 93.9
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.2e-97 358.6 213 93.9
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.2e-97 358.2 213 93.9
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.4e-97 357.1 213 93.9
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.6e-96 356.3 213 92.5
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.6e-96 356.3 213 92.0
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.7e-96 354.8 213 93.0
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-95 353.2 213 93.0
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.3e-95 352.4 209 94.3
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.1e-95 351.3 213 92.5
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.2e-90 335.9 204 93.1
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.5e-90 334.0 209 89.5
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 5.5e-89 331.3 209 89.0
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.8e-87 326.2 209 87.6
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.8e-87 323.9 208 89.4
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.0e-79 298.5 209 81.3
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.1e-76 288.9 169 92.3
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.7e-72 275.8 170 92.4
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 2.4e-52 209.5 137 80.3
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 6.4e-45 184.9 178 62.4
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 1.9e-44 183.3 178 61.8
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 1.2e-43 180.6 193 58.0
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 1.6e-43 180.3 189 58.7
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 2.7e-43 179.5 183 56.3
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 3.5e-43 179.1 177 62.1
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 3.5e-43 179.1 177 62.1
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 6.0e-43 178.3 178 60.7
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 6.0e-43 178.3 179 59.2
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 6.0e-43 178.3 179 59.2
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 7.8e-43 177.9 180 59.4
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 1.0e-42 177.6 192 57.8
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 1.3e-42 177.2 178 59.6
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 2.3e-42 176.4 178 61.2
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 2.3e-42 176.4 162 61.1
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 2.3e-42 176.4 179 59.2
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 3.0e-42 176.0 178 58.4
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 3.0e-42 176.0 160 63.1
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 3.9e-42 175.6 177 61.6
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 1.1e-41 174.1 180 57.2
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 1.5e-41 173.7 190 56.8
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 1.5e-41 173.7 180 58.9
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 1.9e-41 173.3 180 57.8
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 2.5e-41 172.9 179 57.5
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 2.5e-41 172.9 183 58.5
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 2.5e-41 172.9 189 55.6
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 2.5e-41 172.9 181 57.5
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 3.3e-41 172.6 180 57.8
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 4.3e-41 172.2 178 60.1
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 7.3e-41 171.4 182 58.8
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 7.3e-41 171.4 180 57.2
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 1.2e-40 170.6 191 56.5
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.2e-40 170.6 183 58.5
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 2.8e-40 169.5 184 56.0
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 3.6e-40 169.1 181 57.5
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 6.2e-40 168.3 183 56.8
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 8.1e-40 167.9 180 56.1
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 8.1e-40 167.9 181 58.0
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 1.1e-39 167.5 183 57.9
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 1.1e-39 167.5 189 54.5
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 1.8e-39 166.8 187 56.1
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 1.8e-39 166.8 195 55.9
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 1.8e-39 166.8 181 59.1
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 2.3e-39 166.4 192 52.6
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 3.1e-39 166.0 166 60.2
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 3.1e-39 166.0 195 55.4
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 3.1e-39 166.0 172 58.1
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 4.0e-39 165.6 178 55.6
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 6.8e-39 164.9 185 56.2
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 8.9e-39 164.5 180 55.6
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 1.2e-38 164.1 183 54.6
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 1.2e-38 164.1 164 58.5
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 1.5e-38 163.7 182 54.9
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 2.0e-38 163.3 190 54.7
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 2.0e-38 163.3 182 56.0
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 4.4e-38 162.2 190 53.7
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 9.9e-38 161.0 179 57.5
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 9.9e-38 161.0 194 54.6
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 9.9e-38 161.0 180 55.6
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 1.3e-37 160.6 180 55.6
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 1.3e-37 160.6 193 53.9
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 1.3e-37 160.6 178 56.7
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 4.9e-37 158.7 179 53.1
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 1.1e-36 157.5 182 53.8
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 1.1e-36 157.5 194 53.1
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.4e-36 157.1 180 54.4
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 1.4e-36 157.1 177 54.8
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 1.4e-36 157.1 180 52.2
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 1.4e-36 157.1 188 52.7
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 1.9e-36 156.8 180 53.9
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 1.9e-36 156.8 180 53.9
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 5.4e-36 155.2 180 53.3
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 5.4e-36 155.2 180 53.3
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 5.4e-36 155.2 177 54.2
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 7.1e-36 154.8 180 53.9
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 7.1e-36 154.8 184 53.3
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 7.1e-36 154.8 160 58.1
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 1.6e-35 153.7 140 62.1
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 2.1e-35 153.3 184 53.3
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 3.5e-35 152.5 184 53.3
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 3.5e-35 152.5 187 51.9
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 6.0e-35 151.8 180 51.7
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 6.0e-35 151.8 181 53.6
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 1.3e-34 150.6 175 53.7
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 1.3e-34 150.6 180 51.7
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 1.7e-34 150.2 192 48.4
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 3.9e-34 149.1 179 52.0
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 6.6e-34 148.3 175 52.6
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 1.1e-33 147.5 162 54.9
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 1.9e-33 146.7 170 51.2
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 4.3e-33 145.6 159 50.9
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 5.6e-33 145.2 170 50.6
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 5.6e-33 145.2 160 55.0
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 7.3e-33 144.8 170 50.6
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 4.7e-32 142.1 197 48.7
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 1.8e-31 140.2 149 55.0
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 5.2e-31 138.7 149 55.0
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 6.8e-31 138.3 191 48.2
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 8.9e-31 137.9 170 48.8
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 1.2e-30 137.5 159 50.9
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 5.8e-30 135.2 182 49.5
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 1.2e-27 127.5 170 47.6
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 1.2e-27 127.5 200 44.5
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.3e-26 124.0 158 45.6
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.3e-26 124.0 158 45.6
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 1.5e-25 120.6 167 48.5
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 1.5e-25 120.6 161 49.1
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 3.3e-25 119.4 160 50.0
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 2.1e-24 116.7 158 52.5
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 3.6e-24 115.9 169 44.4
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 1.4e-23 114.0 158 51.9
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 4.0e-23 112.5 152 47.4
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 1.7e-21 107.1 202 42.6
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 2.1e-19 100.1 178 39.3
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 1.7e-18 97.1 163 42.9
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 2.3e-18 96.7 117 53.8
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 3.0e-18 96.3 182 42.3
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 8.7e-18 94.7 97 58.8
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 6.2e-16 88.6 96 54.2
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 3.1e-15 86.3 80 57.5
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 4.0e-15 85.9 107 50.5
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 9.9e-14 81.3 92 50.0
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 1.3e-13 80.9 132 40.9
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 2.4e-12 76.6 78 53.8
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 9.3e-12 74.7 116 44.0
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 3.5e-11 72.8 163 39.9
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 4.6e-11 72.4 64 56.2
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 1.0e-10 71.2 58 62.1
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 3.9e-10 69.3 56 60.7
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 6.7e-10 68.6 120 40.8
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 3.3e-09 66.2 91 45.1
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 3.1e-07 59.7 122 38.5
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 5.3e-07 58.9 77 51.9
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 1.5e-06 57.4 112 42.9


User provided reference genes

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