Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.7e-111 404.8 199 100.0
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.7e-93 345.5 164 100.0
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.3e-79 300.1 164 90.2
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.3e-79 300.1 164 90.2
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 2.2e-79 299.3 164 89.6
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 4.9e-79 298.1 165 88.5
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 7.9e-77 290.8 164 87.2
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 2.5e-75 285.8 164 85.4
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 2.5e-75 285.8 164 85.4
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 3.3e-75 285.4 164 85.4
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 3.3e-75 285.4 166 85.5
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 5.7e-75 284.6 164 86.0
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 7.4e-75 284.3 164 84.8
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 7.4e-75 284.3 164 84.8
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 7.4e-75 284.3 164 84.8
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 7.4e-75 284.3 164 84.8
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 9.6e-75 283.9 164 84.8
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 9.6e-75 283.9 164 84.8
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 9.6e-75 283.9 164 84.8
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 1.3e-74 283.5 164 84.8
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.6e-74 283.1 164 84.1
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 1.6e-74 283.1 164 82.9
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 1.6e-74 283.1 164 84.1
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 2.1e-74 282.7 164 84.1
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 2.1e-74 282.7 165 84.2
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 2.8e-74 282.3 164 84.1
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 2.8e-74 282.3 164 84.1
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 4.8e-74 281.6 161 85.1
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 1.1e-73 280.4 164 82.3
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.1e-73 280.4 164 82.3
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-73 280.4 164 82.9
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-73 280.4 164 82.9
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.4e-73 280.0 165 84.2
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 1.4e-73 280.0 164 84.1
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.8e-73 279.6 166 83.7
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.4e-73 279.3 165 84.2
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 3.1e-73 278.9 164 84.8
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.1e-73 278.5 164 84.1
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 4.1e-73 278.5 163 82.8
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 4.1e-73 278.5 165 82.4
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 5.3e-73 278.1 164 83.5
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 5.3e-73 278.1 164 83.5
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 5.3e-73 278.1 164 81.7
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 9.0e-73 277.3 162 82.7
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 1.2e-72 276.9 165 84.2
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 1.2e-72 276.9 164 82.9
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 1.5e-72 276.6 165 83.6
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.0e-72 276.2 158 83.5
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 2.6e-72 275.8 171 81.9
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 3.4e-72 275.4 164 82.3
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 4.5e-72 275.0 193 76.2
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 4.5e-72 275.0 158 82.9
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.0e-71 273.9 193 73.1
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.3e-71 273.5 193 72.5
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.7e-71 273.1 158 81.6
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.7e-71 273.1 165 83.0
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 2.2e-71 272.7 163 81.6
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 2.2e-71 272.7 164 83.5
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 5.0e-71 271.6 164 82.9
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 6.5e-71 271.2 193 72.5
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 6.5e-71 271.2 156 84.0
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 6.5e-71 271.2 159 84.3
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.1e-70 270.4 166 80.1
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.9e-70 269.6 162 82.1
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.9e-70 269.6 164 79.3
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.9e-70 269.6 164 79.3
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 7.2e-70 267.7 165 81.8
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 7.2e-70 267.7 162 82.1
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 9.3e-70 267.3 164 80.5
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 1.2e-69 266.9 162 80.2
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 2.7e-69 265.8 158 82.3
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 2.7e-69 265.8 158 82.3
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.7e-69 265.8 157 80.9
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 7.9e-69 264.2 163 80.4
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 1.0e-68 263.8 164 80.5
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.8e-68 263.1 165 77.0
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 3.0e-68 262.3 159 79.9
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 8.7e-68 260.8 165 76.4
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.9e-67 259.6 164 79.3
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.6e-66 256.5 167 76.6
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 2.8e-66 255.8 164 75.6
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 3.7e-66 255.4 164 77.4
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 3.7e-66 255.4 164 79.9
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 4.8e-66 255.0 167 76.6
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 2.4e-65 252.7 164 75.6
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.5e-64 250.0 167 74.3
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.6e-64 249.2 166 74.7
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 2.6e-64 249.2 166 74.7
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 2.6e-64 249.2 166 74.7
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 2.6e-64 249.2 166 74.7
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 4.5e-64 248.4 166 74.7
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 4.5e-64 248.4 163 74.8
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 2.9e-63 245.7 163 74.2
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 8.5e-63 244.2 194 67.5
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.4e-62 243.4 194 67.0
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-62 243.0 166 73.5
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 4.2e-62 241.9 194 66.0
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 4.2e-62 241.9 194 66.0
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 4.2e-62 241.9 194 66.5
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 4.2e-62 241.9 194 66.5
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 4.2e-62 241.9 194 66.5
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 4.2e-62 241.9 194 66.5
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 5.5e-62 241.5 194 66.0
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-61 240.4 194 66.0
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 2.1e-61 239.6 194 65.5
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 3.6e-61 238.8 164 71.3
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 5.1e-60 235.0 194 64.9
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 2.6e-59 232.6 162 69.1
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 2.6e-59 232.6 163 68.7
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 3.3e-59 232.3 165 68.5
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 3.3e-59 232.3 165 68.5
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 7.4e-59 231.1 163 70.6
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 7.4e-59 231.1 162 68.5
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 4.8e-58 228.4 164 65.9
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 4.8e-58 228.4 194 63.9
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 2.4e-57 226.1 165 66.7
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 3.1e-57 225.7 166 66.9
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 3.1e-57 225.7 162 67.9
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 6.9e-57 224.6 195 64.6
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 1.3e-55 220.3 150 69.3
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 8.5e-55 217.6 151 75.5
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.9e-54 216.5 159 66.7
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 3.6e-53 212.2 157 66.2
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 3.6e-53 212.2 137 75.2
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 6.1e-53 211.5 164 67.7
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-52 209.9 157 65.6
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.9e-52 208.8 165 60.6
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 8.8e-52 207.6 158 63.9
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 3.3e-51 205.7 157 63.7
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 4.4e-51 205.3 158 63.3
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 5.7e-51 204.9 155 62.6
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.3e-50 203.8 138 76.1
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.1e-49 199.1 155 66.5
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 2.2e-47 193.0 131 75.6
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 1.6e-45 186.8 149 58.4
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-44 183.7 153 59.5
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-44 183.7 153 59.5
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-44 183.7 153 59.5
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 6.7e-44 181.4 163 62.0
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 2.0e-43 179.9 172 58.7
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 5.7e-43 178.3 152 57.9
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 5.7e-43 178.3 152 59.2
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 5.7e-43 178.3 152 59.2
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 2.2e-42 176.4 181 52.5
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 2.2e-42 176.4 152 57.2
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 3.7e-42 175.6 152 57.2
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 3.7e-42 175.6 152 57.2
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 3.7e-42 175.6 152 57.2
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 2.4e-41 172.9 152 56.6
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 2.4e-41 172.9 152 56.6
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 2.4e-41 172.9 152 56.6
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 2.4e-41 172.9 159 55.3
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 3.8e-39 165.6 141 58.9
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 1.5e-38 163.7 144 56.2
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 3.0e-36 156.0 153 52.9
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 6.8e-36 154.8 131 61.1
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 9.8e-35 151.0 165 50.3
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.3e-34 150.6 165 50.9
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.8e-33 146.7 86 83.7
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 4.7e-29 132.1 77 72.7
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 8.8e-28 127.9 121 53.7
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.2e-27 127.5 150 44.7
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 7.5e-27 124.8 145 48.3
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.5e-27 124.8 152 45.4
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 5.9e-24 115.2 154 41.6
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 9.5e-22 107.8 73 61.6
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 2.3e-20 103.2 61 82.0
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 4.0e-20 102.4 151 38.4
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 3.4e-19 99.4 146 41.8
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-17 93.6 101 46.5
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.0e-15 87.8 73 57.5
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.8e-12 77.0 94 48.9
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 3.1e-12 76.3 54 75.9
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 3.1e-12 76.3 94 48.9
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.2e-12 75.5 33 90.9
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 6.8e-12 75.1 33 93.9
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.2e-10 70.1 31 90.3
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.0e-07 61.2 47 63.8


User provided reference genes

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