Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1115 Fragaria x ananassa HOM05D002348 ORTHO05D002512 1.2e-46 189.5 93 100.0
FvH4_7g26501 Fragaria vesca HOM05D002348 ORTHO05D002512 5.6e-41 170.6 90 94.4
FAN03G0811 Fragaria x ananassa HOM05D002348 ORTHO05D002512 2.1e-40 168.7 90 93.3
FAN06G0266 Fragaria x ananassa HOM05D002348 ORTHO05D002512 2.8e-40 168.3 90 93.3
RcHm_v2.0_Chr1g0373101 Rosa chinensis HOM05D002348 ORTHO05D002512 1.3e-29 132.9 92 77.2
Prupe.2G269400 Prunus persica HOM05D002348 ORTHO05D002512 8.9e-23 110.2 85 64.7
MD01G1173700 Malus domestica HOM05D002348 ORTHO05D002512 6.4e-21 104.0 91 60.4
MD07G1240700 Malus domestica HOM05D002348 ORTHO05D002512 1.6e-19 99.4 85 61.2
FAN01G0880 Fragaria x ananassa HOM05D001058 ORTHO05D000911 1.5e-17 92.8 44 93.2
CANSAT56G2401 Cannabis sativa HOM05D002348 ORTHO05D002512 1.2e-16 89.7 86 52.3
Haze_22231 Corylus avellana HOM05D002348 ORTHO05D002512 1.1e-15 86.7 76 60.5
Dinv34518 Davidia involucrata HOM05D002348 ORTHO05D002512 1.1e-15 86.7 64 68.8
CiPaw.08G043100 Carya illinoinensis HOM05D002348 ORTHO05D002512 6.8e-15 84.0 87 54.0
Actinidia31649 Actinidia chinensis HOM05D002348 ORTHO05D002512 2.0e-14 82.4 64 65.6
Lj6g0012455 Lotus japonicus HOM05D002348 ORTHO05D002512 2.0e-14 82.4 57 66.7
Potri.015G110400 Populus trichocarpa HOM05D002348 ORTHO05D002512 7.6e-14 80.5 83 56.6
Eucgr.A02950 Eucalyptus grandis HOM05D002348 ORTHO05D002512 9.9e-14 80.1 72 55.6
QL09p027003 Quercus lobata HOM05D002348 ORTHO05D002512 2.2e-13 79.0 83 55.4
Oeu001361.1 Olea europaea HOM05D002348 ORTHO05D002512 6.4e-13 77.4 79 53.2
TPR.G20782 Trifolium pratense HOM05D002348 ORTHO05D002512 2.4e-12 75.5 55 67.3
Ca_21525_v3 Cicer arietinum L. HOM05D002348 ORTHO05D002512 5.4e-12 74.3 79 50.6
Duzib084G0715 Durio zibethinus HOM05D002348 ORTHO05D002512 5.4e-12 74.3 72 58.3
Glyma.02G087700 Glycine max HOM05D002348 ORTHO05D002512 5.4e-12 74.3 72 55.6
Lalb_Chr03g0036511 Lupinus albus HOM05D002348 ORTHO05D002512 5.4e-12 74.3 56 60.7
Psat6g049640 Pisum sativum HOM05D002348 ORTHO05D002512 5.4e-12 74.3 82 50.0
Cc02_g04930 Coffea canephora HOM05D002348 ORTHO05D002512 7.1e-12 73.9 58 60.3
TWI14G0416 Tripterygium wilfordii HOM05D002348 ORTHO05D002512 9.3e-12 73.6 83 48.2
Sopen06g014560 Solanum pennellii HOM05D002348 ORTHO05D002512 1.2e-11 73.2 74 56.8
GSVIVG01013850001 Vitis vinifera HOM05D002348 ORTHO05D002512 2.1e-11 72.4 75 57.3
CSS0024629 Camellia sinensis var. sinensis HOM05D002348 ORTHO05D002512 3.5e-11 71.6 83 48.2
TAR629G3415 Trochodendron aralioides HOM05D002348 ORTHO05D002512 3.5e-11 71.6 72 51.4
Phvul.007G240600 Phaseolus vulgaris HOM05D002348 ORTHO05D002512 4.6e-11 71.2 78 51.3
vmacro06862 Vaccinium macrocarpon HOM05D002348 ORTHO05D002512 4.6e-11 71.2 81 53.1
VMungo0720G0647 Vigna mungo HOM05D002348 ORTHO05D002512 4.6e-11 71.2 54 63.0
Solyc06g048410.4 Solanum lycopersicum HOM05D002348 ORTHO05D002512 7.8e-11 70.5 79 50.6
Atru.chr6.1967 Acer truncatum HOM05D002348 ORTHO05D002512 1.0e-10 70.1 44 68.2
Glyma.10G117100 Glycine max HOM05D002348 ORTHO05D002512 1.3e-10 69.7 90 48.9
Ciclev10032233m.g Citrus clementina HOM05D002348 ORTHO05D002512 1.7e-10 69.3 48 66.7
Aqoxy3G02702 Aquilegia oxysepala HOM05D002348 ORTHO05D002512 2.3e-10 68.9 61 54.1
Peaxi162Scf00073g01924 Petunia axillaris HOM05D002348 ORTHO05D002512 5.1e-10 67.8 64 51.6
arahy.Tifrunner.gnm1.ann1.3X58CP Arachis hypogaea HOM05D002348 ORTHO05D002512 6.6e-10 67.4 87 49.4
COL.COLO4_37294 Corchorus olitorius HOM05D002348 ORTHO05D002512 6.6e-10 67.4 43 69.8
Peaxi162Scf00304g00829 Petunia axillaris HOM05D002348 ORTHO05D002512 6.6e-10 67.4 64 51.6
Cpa.g.sc13.210 Carica papaya HOM05D002348 ORTHO05D002512 8.7e-10 67.0 60 56.7
HanXRQChr08g0223311 Helianthus annuus HOM05D002348 ORTHO05D002512 8.7e-10 67.0 51 58.8
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 8.7e-10 67.0 58 60.3
PGSC0003DMG400005247 Solanum tuberosum HOM05D002348 ORTHO05D002512 8.7e-10 67.0 44 63.6
Manes.06G129100 Manihot esculenta HOM05D002348 ORTHO05D002512 1.1e-09 66.6 83 48.2
Nitab4.5_0000071g0350 Nicotiana tabacum HOM05D002348 ORTHO05D002512 1.1e-09 66.6 82 51.2
ECA233G2169 Erigeron canadensis HOM05D002348 ORTHO05D002512 1.5e-09 66.2 51 58.8
PGSC0003DMG400027577 Solanum tuberosum HOM05D002348 ORTHO05D002512 1.5e-09 66.2 80 50.0
THA.LOC104811548 Tarenaya hassleriana HOM05D002348 ORTHO05D002512 1.5e-09 66.2 82 46.3
AUR62030413 Chenopodium quinoa HOM05D002348 ORTHO05D002512 1.9e-09 65.9 62 51.6
MBI04_g03358_MAGBIO Magnolia biondii HOM05D002348 ORTHO05D002512 1.9e-09 65.9 63 49.2
PSO063G5660 Papaver somniferum HOM05D002348 ORTHO05D002512 1.9e-09 65.9 74 55.4
AUR62010480 Chenopodium quinoa HOM05D002348 ORTHO05D002512 2.5e-09 65.5 39 69.2
MELO3C017624.2 Cucumis melo HOM05D002348 ORTHO05D002512 2.5e-09 65.5 59 59.3
DCAR_018066 Daucus carota HOM05D002348 ORTHO05D002512 2.5e-09 65.5 43 67.4
Nitab4.5_0001130g0120 Nicotiana tabacum HOM05D002348 ORTHO05D002512 2.5e-09 65.5 58 55.2
PSO782G5662 Papaver somniferum HOM05D002348 ORTHO05D002512 2.5e-09 65.5 74 54.1
CsaV3_4G004420 Cucumis sativus L. HOM05D002348 ORTHO05D002512 3.3e-09 65.1 59 61.0
Eucgr.K00110 Eucalyptus grandis HOM05D002348 ORTHO05D002512 3.3e-09 65.1 64 51.6
HanXRQChr08g0223341 Helianthus annuus HOM05D002348 ORTHO05D002512 3.3e-09 65.1 44 65.9
Lsat_1_v5_gn_8_10740 Lactuca sativa HOM05D002348 ORTHO05D002512 3.3e-09 65.1 51 56.9
Nitab4.5_0000103g0130 Nicotiana tabacum HOM05D002348 ORTHO05D002512 3.3e-09 65.1 52 55.8
PSO782G1672 Papaver somniferum HOM05D002348 ORTHO05D002512 3.3e-09 65.1 74 55.4
Potri.012G112301 Populus trichocarpa HOM05D002348 ORTHO05D002512 3.3e-09 65.1 45 64.4
Atru.chr6.138 Acer truncatum HOM05D002348 ORTHO05D002512 4.3e-09 64.7 48 60.4
BraA03t10925Z Brassica rapa HOM05D002348 ORTHO05D002512 5.6e-09 64.3 71 49.3
CAN.G174.1 Capsicum annuum HOM05D002348 ORTHO05D002512 5.6e-09 64.3 50 58.0
Ah.12g058470 Amaranthus hybridus HOM05D002348 ORTHO05D002512 7.3e-09 63.9 64 50.0
Sed0013708 Sechium edule HOM05D002348 ORTHO05D002512 7.3e-09 63.9 59 57.6
A03p16360 Brassica napus HOM05D002348 ORTHO05D002512 9.6e-09 63.5 71 47.9
Ciclev10032406m.g Citrus clementina HOM05D002348 ORTHO05D002512 9.6e-09 63.5 48 66.7
Aa31LG3G7590 Aethionema arabicum HOM05D002348 ORTHO05D002512 1.3e-08 63.2 49 59.2
Carub.0008s1114 Capsella rubella HOM05D002348 ORTHO05D002512 1.3e-08 63.2 83 48.2
PGR042G3595 Punica granatum HOM05D002348 ORTHO05D002512 1.3e-08 63.2 85 47.1
Gohir.A07G045200 Gossypium hirsutum HOM05D002348 ORTHO05D002512 1.6e-08 62.8 46 63.0
Gohir.D07G049600 Gossypium hirsutum HOM05D002348 ORTHO05D002512 1.6e-08 62.8 46 63.0
BcaC01g06070 Brassica carinata HOM05D002348 ORTHO05D002512 2.1e-08 62.4 68 48.5
BcaC01g06106 Brassica carinata HOM05D002348 ORTHO05D002512 2.1e-08 62.4 68 50.0
BolC3t14310H Brassica oleracea HOM05D002348 ORTHO05D002512 2.1e-08 62.4 68 48.5
CDE06G2709 Ceratophyllum demersum HOM05D002348 ORTHO05D002512 2.1e-08 62.4 44 61.4
Thhalv10014192m.g Eutrema salsugineum HOM05D002348 ORTHO05D002512 2.1e-08 62.4 47 59.6
Medtr1g048990 Medicago truncatula HOM05D002348 ORTHO05D002512 2.1e-08 62.4 55 54.5
C03p19240 Brassica napus HOM05D002348 ORTHO05D002512 2.8e-08 62.0 68 48.5
Nitab4.5_0005479g0070 Nicotiana tabacum HOM05D002348 ORTHO05D002512 2.8e-08 62.0 82 50.0
AL8G25350 Arabidopsis lyrata HOM05D002348 ORTHO05D002512 3.6e-08 61.6 49 57.1
Lj8A50T65 Lonicera japonica HOM05D002348 ORTHO05D002512 3.6e-08 61.6 45 64.4
Solyc03g095180.3 Solanum lycopersicum HOM05D002348 ORTHO05D002512 3.6e-08 61.6 44 59.1
Sopen03g025180 Solanum pennellii HOM05D002348 ORTHO05D002512 3.6e-08 61.6 44 59.1
AT5G51100 Arabidopsis thaliana HOM05D002348 ORTHO05D002512 4.8e-08 61.2 49 59.2
CARHR256990 Cardamine hirsuta HOM05D002348 ORTHO05D002512 4.8e-08 61.2 72 47.2
CDE12G0190 Ceratophyllum demersum HOM05D002348 ORTHO05D002512 4.8e-08 61.2 44 63.6
Hma1.2p1_1083F.1_g255230 Hydrangea macrophylla HOM05D002348 ORTHO05D002512 4.8e-08 61.2 85 50.6
BcaC04g20733 Brassica carinata HOM05D002348 ORTHO05D002512 6.2e-08 60.8 54 55.6
Migut.F00551 Erythranthe guttata HOM05D002348 ORTHO05D002512 6.2e-08 60.8 58 51.7
Gorai.001G052700 Gossypium raimondii HOM05D002348 ORTHO05D002512 6.2e-08 60.8 46 60.9
Hund14301 Selenicereus undatus HOM05D002348 ORTHO05D002512 6.2e-08 60.8 62 51.6
EL10Ac5g12583 Beta vulgaris HOM05D002348 ORTHO05D002512 8.1e-08 60.5 82 43.9
Thecc.03G144100 Theobroma cacao HOM05D002348 ORTHO05D002512 8.1e-08 60.5 44 61.4
C09p39770 Brassica napus HOM05D002348 ORTHO05D002512 1.1e-07 60.1 32 78.1
BolC9t56879H Brassica oleracea HOM05D002348 ORTHO05D002512 1.1e-07 60.1 32 78.1
CDE06G0244 Ceratophyllum demersum HOM05D002348 ORTHO05D002512 1.1e-07 60.1 42 64.3
Sp6g13290 Schrenkiella parvula HOM05D002348 ORTHO05D002512 1.1e-07 60.1 52 57.7
Aa31LG7G10570 Aethionema arabicum HOM05D002348 ORTHO05D002512 1.4e-07 59.7 37 67.6
MSTRG.8858 Avicennia marina HOM05D002348 ORTHO05D002512 1.4e-07 59.7 64 46.9
Lalb_Chr07g0193511 Lupinus albus HOM05D002348 ORTHO05D002512 1.8e-07 59.3 61 52.5
unitig_0.g1833 Utricularia gibba HOM05D002348 ORTHO05D002512 1.8e-07 59.3 78 47.4
BcaNung04000 Brassica carinata HOM05D002348 ORTHO05D002512 4.0e-07 58.2 37 62.2
BolC1t01982H Brassica oleracea HOM05D002348 ORTHO05D002512 4.0e-07 58.2 37 62.2
BraA01t01591Z Brassica rapa HOM05D002348 ORTHO05D002512 4.0e-07 58.2 37 62.2
ATR0665G402 Amborella trichopoda HOM05D002348 ORTHO05D002512 5.3e-07 57.8 34 70.6
BcaC09g50808 Brassica carinata HOM05D002348 ORTHO05D002512 5.3e-07 57.8 40 57.5
A01p16360 Brassica napus HOM05D002348 ORTHO05D002512 5.3e-07 57.8 40 57.5
C01p20510 Brassica napus HOM05D002348 ORTHO05D002512 5.3e-07 57.8 40 57.5
Glyma.10G193500 Glycine max HOM05D002348 ORTHO05D002512 6.9e-07 57.4 39 64.1
CARHR190230 Cardamine hirsuta HOM05D002348 ORTHO05D002512 9.0e-07 57.0 57 52.6
Glyma.20G196900 Glycine max HOM05D002348 ORTHO05D002512 1.2e-06 56.6 38 65.8
Phvul.007G135400 Phaseolus vulgaris HOM05D002348 ORTHO05D002512 1.2e-06 56.6 38 65.8
VMungo0720G1434 Vigna mungo HOM05D002348 ORTHO05D002512 1.2e-06 56.6 38 65.8
AL7G28050 Arabidopsis lyrata HOM05D002348 ORTHO05D002512 1.5e-06 56.2 37 62.2
Lsat_1_v5_gn_8_11600 Lactuca sativa HOM05D002348 ORTHO05D002512 1.5e-06 56.2 64 46.9
AT5G23310 Arabidopsis thaliana HOM05D002348 ORTHO05D002512 2.0e-06 55.8 57 52.6
C07p54040 Brassica napus HOM05D002348 ORTHO05D002512 2.0e-06 55.8 40 57.5
AagrBONN_evm.TU.Sc2ySwM_362.1350 Anthoceros agrestis HOM05D002348 ORTHO05D002512 3.4e-06 55.1 67 47.8
BolC7t45890H Brassica oleracea HOM05D002348 ORTHO05D002512 3.4e-06 55.1 37 59.5
Carub.0007s1593 Capsella rubella HOM05D002348 ORTHO05D002512 3.4e-06 55.1 37 59.5
Manes.04G064500 Manihot esculenta HOM05D002348 ORTHO05D002512 3.4e-06 55.1 56 51.8
Sp7g23090 Schrenkiella parvula HOM05D002348 ORTHO05D002512 3.4e-06 55.1 37 59.5
THA.LOC104811546 Tarenaya hassleriana HOM05D002348 ORTHO05D002512 3.4e-06 55.1 37 59.5
AT4G25100 Arabidopsis thaliana HOM05D002348 ORTHO05D002512 4.4e-06 54.7 37 59.5
A03p55760 Brassica napus HOM05D002348 ORTHO05D002512 4.4e-06 54.7 40 57.5
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 4.4e-06 54.7 61 47.5
Eucgr.L03200 Eucalyptus grandis HOM05D002348 ORTHO05D002512 4.4e-06 54.7 30 73.3
Rhsim03G0155500 Rhododendron simsii HOM05D002348 ORTHO05D002512 4.4e-06 54.7 31 74.2
Thhalv10026218m.g Eutrema salsugineum HOM05D002348 ORTHO05D002512 7.6e-06 53.9 37 56.8
HanXRQChr08g0223321 Helianthus annuus HOM05D002348 ORTHO05D002512 7.6e-06 53.9 27 81.5
Mapoly0009s0094 Marchantia polymorpha HOM05D002348 ORTHO05D002512 7.6e-06 53.9 87 41.4
CARHR232490 Cardamine hirsuta HOM05D002348 ORTHO05D002512 9.9e-06 53.5 40 52.5
Rhsim07G0178600 Rhododendron simsii HOM05D002348 ORTHO05D002512 9.9e-06 53.5 56 51.8


User provided reference genes

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