Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 6.8e-34 146.7 74 100.0
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 3.5e-22 107.8 64 87.5
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.0e-21 104.8 64 85.9
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 8.7e-21 103.2 64 84.4
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 1.2e-17 92.8 63 76.2
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 2.7e-14 81.6 63 63.5
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 3.9e-13 77.8 64 64.1
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 8.7e-13 76.6 62 67.7
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.5e-12 75.1 63 63.5
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 3.3e-12 74.7 63 61.9
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 3.3e-12 74.7 63 63.5
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 9.6e-12 73.2 62 58.1
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 9.6e-12 73.2 55 65.5
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 9.6e-12 73.2 68 63.2
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 9.6e-12 73.2 64 60.9
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.3e-11 72.8 63 55.6
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.1e-11 72.0 65 55.4
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 3.7e-11 71.2 64 57.8
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 6.2e-11 70.5 62 67.7
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 8.1e-11 70.1 64 56.2
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.1e-10 69.7 64 56.2
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.1e-10 69.7 52 67.3
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.1e-10 69.7 63 52.4
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.1e-10 69.7 61 55.7
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.4e-10 69.3 62 56.5
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.4e-10 69.3 58 60.3
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.4e-10 69.3 58 60.3
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.4e-10 69.3 64 54.7
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.4e-10 69.3 64 54.7
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 1.4e-10 69.3 63 57.1
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.8e-10 68.9 54 68.5
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 1.8e-10 68.9 62 61.3
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 2.4e-10 68.6 63 52.4
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 2.4e-10 68.6 64 53.1
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 3.1e-10 68.2 63 55.6
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 3.1e-10 68.2 67 55.2
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 4.0e-10 67.8 63 57.1
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 4.0e-10 67.8 62 61.3
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 4.0e-10 67.8 65 56.9
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 5.3e-10 67.4 62 56.5
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 5.3e-10 67.4 64 54.7
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 5.3e-10 67.4 56 58.9
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.9e-10 67.0 58 58.6
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 6.9e-10 67.0 64 54.7
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 6.9e-10 67.0 65 56.9
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 6.9e-10 67.0 65 56.9
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 6.9e-10 67.0 63 54.0
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.0e-10 66.6 63 54.0
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.2e-09 66.2 52 63.5
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.2e-09 66.2 52 63.5
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.2e-09 66.2 63 55.6
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.2e-09 66.2 64 51.6
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.5e-09 65.9 63 52.4
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.5e-09 65.9 56 58.9
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.0e-09 65.5 52 61.5
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 2.6e-09 65.1 60 60.0
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.6e-09 65.1 55 60.0
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.4e-09 64.7 67 58.2
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 4.5e-09 64.3 53 58.5
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 5.8e-09 63.9 53 64.2
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 5.8e-09 63.9 64 51.6
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 5.8e-09 63.9 66 53.0
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 5.8e-09 63.9 69 53.6
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.8e-09 63.9 64 51.6
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 7.6e-09 63.5 62 56.5
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 7.6e-09 63.5 63 52.4
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 7.6e-09 63.5 65 50.8
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.3e-08 62.8 68 51.5
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.7e-08 62.4 55 56.4
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 2.2e-08 62.0 66 53.0
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.2e-08 62.0 53 58.5
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.2e-08 62.0 64 51.6
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 2.9e-08 61.6 52 59.6
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 3.8e-08 61.2 65 47.7
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 3.8e-08 61.2 58 58.6
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 3.8e-08 61.2 57 54.4
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 4.9e-08 60.8 66 53.0
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 4.9e-08 60.8 67 52.2
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 8.4e-08 60.1 69 55.1
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 8.4e-08 60.1 64 48.4
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 8.4e-08 60.1 64 48.4
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 8.4e-08 60.1 66 43.9
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.1e-07 59.7 54 61.1
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.1e-07 59.7 53 62.3
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-07 59.7 65 52.3
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.1e-07 59.7 67 52.2
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.1e-07 59.7 63 50.8
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.1e-07 59.7 54 61.1
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.1e-07 59.7 54 61.1
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.4e-07 59.3 64 50.0
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 1.9e-07 58.9 65 47.7
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.9e-07 58.9 65 49.2
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.9e-07 58.9 52 63.5
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 1.9e-07 58.9 63 49.2
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.5e-07 58.5 52 63.5
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 3.2e-07 58.2 67 52.2
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 3.2e-07 58.2 60 51.7
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 3.2e-07 58.2 62 48.4
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 3.2e-07 58.2 66 48.5
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 4.2e-07 57.8 63 52.4
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 4.2e-07 57.8 65 52.3
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 4.2e-07 57.8 64 46.9
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 4.2e-07 57.8 61 50.8
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 4.2e-07 57.8 56 55.4
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 4.2e-07 57.8 49 59.2
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.2e-07 57.8 64 51.6
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 5.5e-07 57.4 51 54.9
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 5.5e-07 57.4 51 58.8
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 7.1e-07 57.0 64 53.1
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 9.3e-07 56.6 57 54.4
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.2e-06 56.2 50 56.0
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.2e-06 56.2 66 47.0
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.2e-06 56.2 52 55.8
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 1.2e-06 56.2 61 52.5
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-06 56.2 61 52.5
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.2e-06 56.2 61 52.5
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 1.2e-06 56.2 57 54.4
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.6e-06 55.8 53 58.5
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.6e-06 55.8 60 51.7
FAN28G1450 Fragaria x ananassa HOM05D064237 ORTHO05D004478 1.6e-06 55.8 40 72.5
FAN28G2767 Fragaria x ananassa HOM05D064237 ORTHO05D004478 1.6e-06 55.8 40 72.5
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.6e-06 55.8 56 51.8
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 2.1e-06 55.5 64 46.9
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 2.1e-06 55.5 55 56.4
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 2.7e-06 55.1 59 45.8
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 3.5e-06 54.7 52 48.1
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 3.5e-06 54.7 52 48.1
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.5e-06 54.7 65 49.2
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 3.5e-06 54.7 65 49.2
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 4.6e-06 54.3 48 58.3
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 6.0e-06 53.9 64 45.3
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 6.0e-06 53.9 52 61.5
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 6.0e-06 53.9 56 51.8


User provided reference genes

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