Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 5.6e-98 360.9 179 100.0
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 5.3e-72 274.6 138 95.7
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 2.1e-68 262.7 137 92.7
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 6.5e-62 241.1 138 81.9
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 1.6e-60 236.5 138 81.9
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 1.3e-51 206.8 138 71.7
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 2.2e-49 199.5 138 68.1
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 2.2e-49 199.5 138 71.0
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 2.2e-49 199.5 138 71.0
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 4.8e-49 198.4 138 67.4
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 1.4e-48 196.8 137 71.5
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 1.8e-48 196.4 137 68.6
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 4.1e-48 195.3 143 66.4
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 5.3e-48 194.9 138 68.8
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 2.6e-47 192.6 136 69.9
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.3e-46 190.3 138 68.1
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 1.3e-46 190.3 137 65.0
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 2.9e-46 189.1 137 65.7
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 5.5e-45 184.9 137 62.0
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 7.2e-45 184.5 136 64.7
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.2e-44 183.7 138 62.3
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 1.6e-44 183.3 138 65.9
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 2.7e-44 182.6 137 67.2
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 3.6e-44 182.2 137 63.5
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 3.6e-44 182.2 138 65.2
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 3.6e-44 182.2 138 62.3
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 6.1e-44 181.4 137 62.0
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 3.9e-43 178.7 135 63.0
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.9e-43 178.7 137 61.3
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 6.7e-43 177.9 138 64.5
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 6.7e-43 177.9 136 63.2
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 6.7e-43 177.9 137 62.8
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 1.1e-42 177.2 133 63.2
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 1.1e-42 177.2 135 63.7
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.5e-42 176.0 137 65.0
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 2.5e-42 176.0 138 63.8
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 4.3e-42 175.3 149 57.0
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 7.4e-42 174.5 137 59.9
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 7.4e-42 174.5 138 60.9
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 9.7e-42 174.1 138 63.0
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 1.7e-41 173.3 138 60.1
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 2.2e-41 172.9 138 61.6
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 2.8e-41 172.6 138 62.3
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 6.3e-41 171.4 138 62.3
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 1.1e-40 170.6 138 63.8
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 1.8e-40 169.9 136 59.6
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 2.4e-40 169.5 142 60.6
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 2.4e-40 169.5 138 62.3
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 3.1e-40 169.1 140 60.0
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 4.1e-40 168.7 137 60.6
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 4.1e-40 168.7 138 63.0
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 5.3e-40 168.3 149 54.4
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 1.2e-39 167.2 138 60.9
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 1.2e-39 167.2 138 61.6
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.2e-39 167.2 137 62.8
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 1.5e-39 166.8 138 60.9
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 2.0e-39 166.4 138 61.6
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 7.7e-39 164.5 137 58.4
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 1.3e-38 163.7 140 59.3
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 1.3e-38 163.7 137 58.4
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.7e-38 163.3 137 59.9
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 2.9e-38 162.5 138 60.1
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 8.5e-38 161.0 137 58.4
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 8.5e-38 161.0 137 58.4
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 1.1e-37 160.6 107 71.0
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 9.4e-37 157.5 138 58.7
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 1.2e-36 157.1 140 50.7
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 1.2e-36 157.1 137 58.4
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 1.2e-36 157.1 139 51.8
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 2.1e-36 156.4 142 52.1
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 2.7e-36 156.0 140 50.0
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 3.6e-36 155.6 141 52.5
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 6.1e-36 154.8 140 53.6
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 1.0e-35 154.1 140 50.7
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 2.3e-35 152.9 119 61.3
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 5.1e-35 151.8 119 59.7
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 6.7e-35 151.4 150 47.3
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 6.7e-35 151.4 140 50.0
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 6.7e-35 151.4 140 50.0
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 1.1e-34 150.6 141 52.5
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 1.1e-34 150.6 139 51.1
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.1e-34 150.6 139 51.1
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 1.5e-34 150.2 138 57.2
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 2.0e-34 149.8 119 61.3
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 9.7e-34 147.5 119 60.5
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.8e-33 146.0 107 66.4
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 1.4e-32 143.7 119 60.5
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 5.3e-32 141.7 122 59.8
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 2.0e-31 139.8 137 50.4
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 4.5e-31 138.7 118 57.6
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 1.7e-30 136.7 119 58.8
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 3.2e-29 132.5 119 53.8
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 3.2e-29 132.5 114 58.8
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 6.1e-28 128.3 89 67.4
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 3.3e-26 122.5 96 61.5
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 3.3e-26 122.5 96 62.5
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 1.2e-23 114.0 141 44.7
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 2.0e-23 113.2 138 46.4
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 4.5e-23 112.1 138 41.3
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 1.3e-22 110.5 92 55.4
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 2.9e-22 109.4 133 45.1
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 3.2e-21 105.9 100 53.0
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 1.2e-18 97.4 91 56.0
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 3.1e-16 89.4 136 39.0
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 8.5e-14 81.3 51 72.5
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 6.3e-09 65.1 146 32.9
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 6.3e-09 65.1 98 34.7
Dinv24123 Davidia involucrata HOM05D006560 ORTHO05D008164 3.8e-06 55.8 29 82.8


User provided reference genes

Program Settings