Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.9e-133 479.2 242 100.0
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.4e-130 468.4 242 97.5
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.4e-130 468.4 241 97.1
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.4e-130 468.0 242 97.1
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 3.5e-127 458.4 242 95.0
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.8e-123 446.0 296 79.4
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 3.3e-117 425.2 217 98.2
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 3.0e-110 402.1 232 85.3
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.4e-107 393.3 234 82.9
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.8e-107 392.9 232 81.5
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.8e-107 392.9 232 83.2
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 3.1e-107 392.1 232 81.5
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.0e-106 389.4 236 82.2
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 7.5e-106 387.5 232 80.6
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.9e-104 382.9 232 80.6
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 5.4e-104 381.3 232 81.0
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 2.7e-103 379.0 230 79.6
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 6.0e-103 377.9 231 79.7
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 8.6e-102 374.0 229 79.5
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.9e-101 372.9 229 80.8
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.9e-101 372.9 229 79.5
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 3.3e-101 372.1 229 80.3
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 4.3e-101 371.7 230 79.6
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 9.5e-101 370.5 265 71.7
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.2e-100 370.2 232 79.7
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.2e-100 370.2 235 76.2
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.6e-100 369.8 232 78.9
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 2.1e-100 369.4 229 79.0
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 2.1e-100 369.4 229 79.0
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 2.1e-100 369.4 230 79.6
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 2.1e-100 369.4 229 79.5
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 4.7e-100 368.2 229 78.6
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.4e-99 366.7 231 75.8
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 2.3e-99 365.9 239 76.6
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 2.3e-99 365.9 234 76.5
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 2.3e-99 365.9 228 78.9
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 5.2e-99 364.8 235 74.9
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 5.2e-99 364.8 233 78.1
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 8.9e-99 364.0 229 77.7
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 8.9e-99 364.0 228 78.5
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.2e-98 363.6 230 77.4
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.5e-98 363.2 236 76.7
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.5e-98 363.2 232 75.9
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 2.6e-98 362.5 233 76.4
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.4e-98 361.7 233 78.5
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 5.8e-98 361.3 232 77.6
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.3e-97 360.1 211 84.8
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.7e-97 359.8 232 76.7
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.2e-97 359.4 234 76.1
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.9e-97 359.0 234 75.2
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.9e-97 359.0 234 75.2
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.9e-97 359.0 211 83.4
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 6.4e-97 357.8 234 76.5
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 6.4e-97 357.8 231 74.5
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.1e-96 357.1 230 76.1
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.4e-96 356.7 230 75.2
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.9e-96 356.3 225 78.7
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.9e-96 356.3 230 75.2
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 5.4e-96 354.8 229 74.2
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.7e-95 352.4 233 74.7
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 2.7e-95 352.4 232 74.6
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 6.0e-95 351.3 235 74.5
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.0e-95 351.3 231 73.2
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 6.0e-95 351.3 232 73.7
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 7.8e-95 350.9 233 72.1
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 7.8e-95 350.9 237 72.2
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 7.8e-95 350.9 227 76.7
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 1.0e-94 350.5 234 73.5
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.7e-94 349.7 232 75.0
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.7e-94 349.7 237 72.6
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 2.3e-94 349.4 232 73.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 3.0e-94 349.0 231 73.2
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.0e-94 349.0 229 72.9
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 6.6e-94 347.8 235 74.0
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 8.6e-94 347.4 235 75.7
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.1e-93 347.1 232 72.4
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 4.3e-93 345.1 235 74.5
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 4.3e-93 345.1 235 74.5
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 4.3e-93 345.1 235 74.5
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 5.6e-93 344.7 232 72.8
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 2.1e-92 342.8 236 72.0
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 4.7e-92 341.7 235 71.1
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.4e-91 340.1 235 73.6
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.4e-91 340.1 231 72.3
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 2.4e-91 339.3 332 56.3
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 3.1e-91 339.0 193 85.0
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 4.0e-91 338.6 234 71.8
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 6.8e-91 337.8 235 73.6
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 8.9e-91 337.4 249 68.7
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.5e-90 336.7 234 71.8
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 2.6e-90 335.9 233 71.2
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 5.8e-90 334.7 229 69.9
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 9.9e-90 334.0 235 73.2
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 8.4e-89 330.9 235 70.6
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.1e-88 330.5 226 72.1
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 2.7e-87 325.9 191 82.2
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 7.8e-87 324.3 233 69.5
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.0e-86 323.9 256 64.8
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.3e-86 323.6 234 71.4
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.1e-85 320.5 196 80.6
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.9e-85 319.7 207 72.9
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 3.4e-82 308.9 273 60.1
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.7e-81 306.6 205 72.7
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 2.1e-79 299.7 197 74.1
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.7e-78 296.6 232 66.4
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 5.1e-78 295.0 192 76.0
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 5.6e-77 291.6 169 81.1
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 7.6e-74 281.2 162 82.7
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.9e-72 276.6 234 64.1
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 4.6e-71 271.9 227 58.6
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.6e-68 263.5 160 77.5
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.1e-67 259.2 225 55.6
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 5.8e-66 255.0 222 56.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 2.1e-63 246.5 135 85.9
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.8e-60 235.3 151 76.2
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 6.1e-55 218.4 191 57.6
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 2.3e-54 216.5 126 81.7
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 6.9e-51 204.9 116 82.8
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.3e-49 200.7 139 70.5
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.3e-49 200.7 139 70.5
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 3.8e-49 199.1 181 58.6
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.9e-48 196.8 162 63.6
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 7.9e-47 191.4 223 43.5
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 1.0e-46 191.0 130 72.3
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 3.1e-43 179.5 119 76.5
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.1e-43 179.1 125 72.0
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 2.6e-42 176.4 119 75.6
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 4.5e-42 175.6 119 74.8
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 5.5e-40 168.7 227 43.2
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 2.7e-39 166.4 118 68.6
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.1e-32 144.4 127 63.0
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 3.6e-31 139.4 119 62.2
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 1.5e-29 134.0 152 50.7
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 1.5e-29 134.0 184 43.5
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.3e-29 132.9 111 63.1
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 9.7e-29 131.3 81 79.0
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 7.0e-27 125.2 89 67.4
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.2e-26 124.4 99 62.6
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 7.7e-26 121.7 85 68.2
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.8e-25 119.4 106 61.3
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.0e-25 119.0 79 62.0
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 3.2e-24 116.3 238 33.6
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.4e-22 110.9 91 57.1
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 2.0e-21 107.1 184 34.2
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.1e-19 99.8 100 59.0
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 2.7e-18 96.7 51 86.3
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 7.7e-18 95.1 54 81.5
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 7.2e-16 88.6 70 64.3
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 8.8e-14 81.6 53 71.7
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 7.7e-10 68.6 39 82.1
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 2.9e-09 66.6 162 34.6
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 9.5e-08 61.6 33 78.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 5.2e-06 55.8 30 83.3


User provided reference genes

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