Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.6e-232 808.9 592 100.0
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 1.7e-204 716.5 552 99.5
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.9e-179 633.3 550 75.6
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 3.3e-179 632.5 548 91.2
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.3e-164 583.2 592 75.5
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 5.1e-140 502.3 473 72.5
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 1.8e-137 493.8 578 70.2
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 4.8e-130 469.2 573 70.9
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 3.1e-121 439.9 573 65.3
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 1.6e-120 437.6 579 71.0
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 3.5e-120 436.4 560 59.3
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 4.4e-115 419.5 532 59.8
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 8.8e-108 395.2 581 62.0
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 1.5e-107 394.4 459 63.2
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 7.5e-107 392.1 580 63.8
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 7.5e-107 392.1 521 66.0
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 8.3e-106 388.7 568 51.8
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 2.7e-104 383.6 609 54.7
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 5.9e-104 382.5 516 64.0
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 1.5e-102 377.9 499 74.9
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.9e-102 377.5 468 72.6
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 8.0e-101 372.1 580 62.4
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 1.5e-99 367.9 562 66.2
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 4.4e-99 366.3 463 66.3
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 7.5e-99 365.5 580 56.4
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 9.8e-99 365.2 516 61.6
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 6.3e-98 362.5 496 64.3
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.8e-97 360.9 479 51.1
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 2.4e-97 360.5 470 56.6
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 7.0e-97 359.0 555 57.8
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 9.2e-97 358.6 515 65.6
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 1.6e-96 357.8 581 54.9
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 2.0e-96 357.5 509 66.8
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.0e-95 355.1 566 64.5
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 2.3e-95 354.0 502 49.4
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 5.0e-95 352.8 501 56.7
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 1.9e-94 350.9 504 54.2
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 7.3e-94 349.0 500 55.2
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 1.2e-93 348.2 490 54.9
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 1.6e-93 347.8 568 64.3
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 1.0e-92 345.1 557 60.0
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 2.6e-91 340.5 469 57.6
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 3.4e-91 340.1 562 63.2
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 6.4e-90 335.9 522 66.3
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 8.3e-90 335.5 513 62.0
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 1.1e-89 335.1 580 58.6
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 1.1e-89 335.1 563 56.7
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 1.9e-89 334.3 564 63.5
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 2.4e-89 334.0 469 54.2
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 4.1e-89 333.2 648 48.3
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 4.1e-89 333.2 469 63.3
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 6.0e-88 329.3 575 55.8
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 6.0e-88 329.3 447 55.9
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 3.0e-87 327.0 507 52.7
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 6.6e-87 325.9 528 60.0
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 9.5e-86 322.0 452 63.3
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 9.5e-86 322.0 491 64.2
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 2.8e-85 320.5 425 59.1
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 6.2e-85 319.3 579 59.2
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 8.1e-85 318.9 467 51.4
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.1e-84 318.5 493 55.0
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 2.6e-83 313.9 496 63.3
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 1.7e-82 311.2 556 51.6
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 1.2e-80 305.1 491 51.5
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 3.5e-80 303.5 474 59.9
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 4.6e-80 303.1 578 52.8
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 6.0e-80 302.8 484 56.4
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 5.1e-79 299.7 423 65.0
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.1e-78 298.5 514 60.1
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 3.3e-78 297.0 572 52.4
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 3.3e-78 297.0 286 75.9
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 7.3e-78 295.8 599 53.3
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 8.1e-77 292.4 488 66.4
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 8.1e-77 292.4 514 57.6
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 1.1e-76 292.0 514 55.4
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 2.3e-76 290.8 510 60.0
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 2.3e-76 290.8 542 54.2
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 6.8e-76 289.3 452 60.0
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 8.9e-76 288.9 496 51.4
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 8.9e-76 288.9 325 58.2
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 2.0e-75 287.7 484 62.4
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 2.6e-75 287.3 506 60.9
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 4.4e-75 286.6 514 59.5
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 3.7e-74 283.5 566 59.0
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 6.4e-74 282.7 495 60.0
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 7.1e-73 279.3 416 50.7
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 9.2e-73 278.9 508 59.8
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 3.5e-72 276.9 505 59.2
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 6.0e-72 276.2 506 58.3
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 2.3e-71 274.2 468 57.3
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 5.1e-71 273.1 466 61.8
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 1.9e-70 271.2 586 40.1
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 2.5e-70 270.8 467 61.7
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 3.3e-70 270.4 467 61.7
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.1e-69 267.7 415 62.9
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 5.2e-68 263.1 454 63.2
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 7.6e-67 259.2 339 60.8
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 7.3e-62 242.7 526 39.9
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.1e-60 237.3 491 40.1
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 1.1e-57 228.8 567 36.3
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 1.9e-57 228.0 528 49.1
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.2e-56 225.3 422 36.3
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 1.5e-51 208.4 278 61.9
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 6.0e-48 196.4 211 52.1
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 6.7e-47 193.0 139 65.5
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 4.8e-45 186.8 203 71.9
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.2e-43 182.2 323 50.5
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 1.0e-39 169.1 127 65.4
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.0e-31 142.5 209 51.2
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 6.3e-29 133.3 356 26.7
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 1.1e-28 132.5 397 44.1
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.4e-28 131.3 96 67.7
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 9.0e-28 129.4 147 47.6
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.4e-25 122.1 320 32.2
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.3e-22 110.5 317 41.6
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 7.4e-22 109.8 85 62.4
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 8.2e-21 106.3 328 24.1
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.0e-18 99.4 92 96.7
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 6.5e-18 96.7 142 35.2
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 2.1e-16 91.7 56 78.6
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.4e-14 84.0 141 32.6
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 8.2e-13 79.7 144 29.9
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 8.2e-13 79.7 52 69.2
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.1e-12 79.3 60 63.3
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 8.5e-10 69.7 108 43.5
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 5.5e-09 67.0 70 45.7
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 8.0e-08 63.2 111 36.0
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 3.0e-07 61.2 43 67.4
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 1.5e-06 58.9 89 39.3


User provided reference genes

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