Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4150 Fragaria x ananassa HOM05D003441 ORTHO05D022097 2.5e-141 505.4 245 100.0
FvH4_7g08220 Fragaria vesca HOM05D003441 ORTHO05D004516 8.2e-92 340.9 227 80.2
RcHm_v2.0_Chr1g0341861 Rosa chinensis HOM05D003441 ORTHO05D004516 2.1e-79 299.7 213 74.6
RcHm_v2.0_Chr1g0341621 Rosa chinensis HOM05D003441 ORTHO05D004516 2.8e-68 262.7 230 63.0
Rhsim02G0234100 Rhododendron simsii HOM05D003441 ORTHO05D004516 1.1e-67 260.8 161 81.4
FvH4_7g07850 Fragaria vesca HOM05D003441 ORTHO05D004516 2.0e-66 256.5 210 67.1
Gohir.A11G022800 Gossypium hirsutum HOM05D003441 ORTHO05D004516 4.5e-66 255.4 234 62.0
Prupe.5G104000 Prunus persica HOM05D003441 ORTHO05D004516 5.9e-66 255.0 228 62.7
FAN06G2516 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.7e-65 253.4 190 70.5
FAN10G3500 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.8e-65 252.3 231 63.2
QL12p032410 Quercus lobata HOM05D003441 ORTHO05D004516 6.5e-65 251.5 229 62.4
Dinv37619 Davidia involucrata HOM05D003441 ORTHO05D004516 1.1e-64 250.8 166 76.5
PGR042G0359 Punica granatum HOM05D003441 ORTHO05D004516 1.1e-64 250.8 202 63.9
MSTRG.11971 Avicennia marina HOM05D003441 ORTHO05D004516 1.9e-64 250.0 173 73.4
SalBow1G4213 Salvia bowleyana HOM05D003441 ORTHO05D004516 1.9e-64 250.0 161 77.6
SalBow1G5824 Salvia bowleyana HOM05D003441 ORTHO05D004516 1.9e-64 250.0 161 77.6
Aqoxy1G00680 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 2.5e-64 249.6 160 78.1
CANSAT25G0732 Cannabis sativa HOM05D003441 ORTHO05D004516 2.5e-64 249.6 161 78.3
Haze_08814 Corylus avellana HOM05D003441 ORTHO05D004516 4.2e-64 248.8 229 62.0
Gorai.007G023800 Gossypium raimondii HOM05D003441 ORTHO05D004516 4.2e-64 248.8 228 61.4
CARHR212960 Cardamine hirsuta HOM05D003441 ORTHO05D004516 5.5e-64 248.4 228 60.1
AUR62030470 Chenopodium quinoa HOM05D003441 ORTHO05D004516 7.2e-64 248.1 206 64.6
Sc07g0009820 Simmondsia chinensis HOM05D003441 ORTHO05D004516 7.2e-64 248.1 160 77.5
CSS0029160 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 9.4e-64 247.7 228 62.7
CiPaw.12G091100 Carya illinoinensis HOM05D003441 ORTHO05D004516 1.2e-63 247.3 166 75.3
COL.COLO4_34498 Corchorus olitorius HOM05D003441 ORTHO05D004516 2.1e-63 246.5 228 60.5
Nn6g33339 Nelumbo nucifera HOM05D003441 ORTHO05D004516 2.1e-63 246.5 166 75.3
CSS0043381 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 3.6e-63 245.7 204 66.2
AUR62010445 Chenopodium quinoa HOM05D003441 ORTHO05D004516 3.6e-63 245.7 206 64.1
Cpa.g.sc180.13 Carica papaya HOM05D003441 ORTHO05D004516 6.1e-63 245.0 228 61.0
Lj8A218G25 Lonicera japonica HOM05D003441 ORTHO05D004516 6.1e-63 245.0 160 75.6
Gohir.A03G019400 Gossypium hirsutum HOM05D003441 ORTHO05D004516 8.0e-63 244.6 160 76.9
Hund10975 Selenicereus undatus HOM05D003441 ORTHO05D004516 8.0e-63 244.6 208 64.4
Atru.chr9.2153 Acer truncatum HOM05D003441 ORTHO05D004516 1.0e-62 244.2 158 77.8
AT5G41370 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.0e-62 244.2 228 59.2
HanXRQChr17g0533461 Helianthus annuus HOM05D003441 ORTHO05D004516 1.0e-62 244.2 166 74.7
Thecc.03G282800 Theobroma cacao HOM05D003441 ORTHO05D004516 1.0e-62 244.2 228 61.8
Duzib205G0291 Durio zibethinus HOM05D003441 ORTHO05D004516 1.4e-62 243.8 161 76.4
Carub.0007s3412 Capsella rubella HOM05D003441 ORTHO05D004516 1.8e-62 243.4 163 76.1
TWI15G1061 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 1.8e-62 243.4 165 73.3
GSVIVG01019392001 Vitis vinifera HOM05D003441 ORTHO05D004516 1.8e-62 243.4 160 76.9
ATR0661G194 Amborella trichopoda HOM05D003441 ORTHO05D004516 3.0e-62 242.7 232 59.9
FvH4_5g02840 Fragaria vesca HOM05D003441 ORTHO05D004516 3.0e-62 242.7 227 59.9
Psat7g031680 Pisum sativum HOM05D003441 ORTHO05D004516 3.0e-62 242.7 166 74.1
RcHm_v2.0_Chr7g0197061 Rosa chinensis HOM05D003441 ORTHO05D004516 3.0e-62 242.7 227 59.9
TWI15G1203 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 3.0e-62 242.7 160 75.6
Potri.001G101300 Populus trichocarpa HOM05D003441 ORTHO05D004516 4.0e-62 242.3 160 76.2
TAR636G0201 Trochodendron aralioides HOM05D003441 ORTHO05D004516 4.0e-62 242.3 159 77.4
HPP92_021979 Vanilla planifolia HOM05D003441 ORTHO05D004516 4.0e-62 242.3 160 75.0
Ca_10937_v3 Cicer arietinum L. HOM05D003441 ORTHO05D004516 5.2e-62 241.9 166 73.5
SEGI_12778 Sequoiadendron giganteum HOM05D003441 ORTHO05D022097 6.8e-62 241.5 161 77.6
EL10Ac5g12531 Beta vulgaris HOM05D003441 ORTHO05D004516 1.2e-61 240.7 162 74.7
Eucgr.E00638 Eucalyptus grandis HOM05D003441 ORTHO05D004516 1.2e-61 240.7 225 58.7
Gohir.D03G149600 Gossypium hirsutum HOM05D003441 ORTHO05D004516 1.2e-61 240.7 160 75.6
Gorai.003G156900 Gossypium raimondii HOM05D003441 ORTHO05D004516 1.2e-61 240.7 160 75.6
Lj4g0015025 Lotus japonicus HOM05D003441 ORTHO05D004516 1.2e-61 240.7 192 66.1
Medtr8g098675 Medicago truncatula HOM05D003441 ORTHO05D004516 1.2e-61 240.7 160 75.6
Solyc08g081340.4 Solanum lycopersicum HOM05D003441 ORTHO05D004516 1.2e-61 240.7 160 75.6
Sopen08g029660 Solanum pennellii HOM05D003441 ORTHO05D004516 1.2e-61 240.7 160 75.6
Thhalv10027651m.g Eutrema salsugineum HOM05D003441 ORTHO05D004516 1.5e-61 240.4 228 58.8
Os01g0691600 Oryza sativa ssp. japonica HOM05D003441 ORTHO05D004516 1.5e-61 240.4 167 73.1
Ah.12g058870 Amaranthus hybridus HOM05D003441 ORTHO05D004516 2.0e-61 240.0 166 73.5
AT5G41360 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 2.0e-61 240.0 222 59.0
Duzib084G0223 Durio zibethinus HOM05D003441 ORTHO05D004516 2.0e-61 240.0 160 75.6
THA.LOC104817891 Tarenaya hassleriana HOM05D003441 ORTHO05D004516 2.0e-61 240.0 228 59.2
VMungo0251G2080 Vigna mungo HOM05D003441 ORTHO05D004516 2.0e-61 240.0 192 65.6
Manes.02G021700 Manihot esculenta HOM05D003441 ORTHO05D004516 3.4e-61 239.2 228 59.6
arahy.Tifrunner.gnm1.ann1.5RI6ER Arachis hypogaea HOM05D003441 ORTHO05D004516 5.7e-61 238.4 156 76.9
arahy.Tifrunner.gnm1.ann1.75Q964 Arachis hypogaea HOM05D003441 ORTHO05D004516 5.7e-61 238.4 156 76.9
MD06G1087900 Malus domestica HOM05D003441 ORTHO05D004516 5.7e-61 238.4 229 59.4
AL7G48050 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 7.5e-61 238.0 228 58.3
AL7G48070 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 7.5e-61 238.0 228 57.9
Glyma.08G016400 Glycine max HOM05D003441 ORTHO05D004516 7.5e-61 238.0 166 71.1
Lalb_Chr16g0390181 Lupinus albus HOM05D003441 ORTHO05D004516 7.5e-61 238.0 166 71.7
Phvul.002G291500 Phaseolus vulgaris HOM05D003441 ORTHO05D004516 9.8e-61 237.7 166 72.3
ECA246G2088 Erigeron canadensis HOM05D003441 ORTHO05D004516 1.3e-60 237.3 161 75.2
Glyma.05G209700 Glycine max HOM05D003441 ORTHO05D004516 1.3e-60 237.3 230 57.8
Carub.0007s3411 Capsella rubella HOM05D003441 ORTHO05D004516 1.7e-60 236.9 223 58.7
HanXRQChr06g0165951 Helianthus annuus HOM05D003441 ORTHO05D004516 2.2e-60 236.5 166 73.5
Lalb_Chr05g0224631 Lupinus albus HOM05D003441 ORTHO05D004516 2.2e-60 236.5 158 74.7
TWI81G0502 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 3.7e-60 235.7 160 74.4
Aqoxy5G02024 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 4.8e-60 235.3 160 73.1
SHI07186 Sapria himalayana HOM05D003441 ORTHO05D004516 8.3e-60 234.6 240 57.5
CsaV3_5G002620 Cucumis sativus L. HOM05D003441 ORTHO05D004516 1.4e-59 233.8 166 71.1
Migut.E01191 Erythranthe guttata HOM05D003441 ORTHO05D004516 2.4e-59 233.0 160 73.8
Sp7g00580 Schrenkiella parvula HOM05D003441 ORTHO05D004516 3.1e-59 232.6 228 57.9
SpUn0010_0060 Schrenkiella parvula HOM05D003441 ORTHO05D004516 3.1e-59 232.6 228 57.9
Sed0019074 Sechium edule HOM05D003441 ORTHO05D004516 3.1e-59 232.6 166 71.1
Zm00001eb156220 Zea mays HOM05D003441 ORTHO05D004516 4.1e-59 232.3 167 71.3
Actinidia28364 Actinidia chinensis HOM05D003441 ORTHO05D004516 7.0e-59 231.5 160 73.8
BcaB06g27616 Brassica carinata HOM05D003441 ORTHO05D004516 1.2e-58 230.7 224 58.0
BraA04t17095Z Brassica rapa HOM05D003441 ORTHO05D004516 3.5e-58 229.2 157 73.9
Nitab4.5_0001220g0100 Nicotiana tabacum HOM05D003441 ORTHO05D004516 3.5e-58 229.2 160 73.8
A04p14500 Brassica napus HOM05D003441 ORTHO05D004516 4.5e-58 228.8 224 57.6
A07p20760 Brassica napus HOM05D003441 ORTHO05D004516 4.5e-58 228.8 228 56.1
MELO3C005694.2 Cucumis melo HOM05D003441 ORTHO05D004516 5.9e-58 228.4 201 61.7
Pp3c6_13890 Physcomitrium patens HOM05D003441 ORTHO05D004516 5.9e-58 228.4 169 66.9
BcaC02g08964 Brassica carinata HOM05D003441 ORTHO05D004516 7.7e-58 228.0 224 57.1
Lsat_1_v5_gn_3_6121 Lactuca sativa HOM05D003441 ORTHO05D004516 7.7e-58 228.0 166 71.1
PSO017G3334 Papaver somniferum HOM05D003441 ORTHO05D004516 7.7e-58 228.0 155 72.9
PSO421G0274 Papaver somniferum HOM05D003441 ORTHO05D004516 7.7e-58 228.0 155 72.9
C04p48400 Brassica napus HOM05D003441 ORTHO05D004516 1.3e-57 227.3 224 57.1
BolC4t26434H Brassica oleracea HOM05D003441 ORTHO05D004516 1.3e-57 227.3 224 57.1
BraA07t29768Z Brassica rapa HOM05D003441 ORTHO05D004516 1.7e-57 226.9 161 70.8
FAN04G2979 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.7e-57 226.9 227 57.3
TPR.G33074 Trifolium pratense HOM05D003441 ORTHO05D004516 2.3e-57 226.5 150 77.3
FAN13G0786 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.0e-57 225.3 227 56.8
FAN18G3267 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.0e-57 225.3 227 56.8
Ciclev10019088m.g Citrus clementina HOM05D003441 ORTHO05D004516 6.5e-57 224.9 149 77.2
Aa31LG5G13590 Aethionema arabicum HOM05D003441 ORTHO05D004516 1.1e-56 224.2 228 55.7
BcaB02g07896 Brassica carinata HOM05D003441 ORTHO05D004516 1.5e-56 223.8 223 57.0
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 3.2e-56 222.6 160 72.5
AagrBONN_evm.TU.Sc2ySwM_368.2338 Anthoceros agrestis HOM05D003441 ORTHO05D004516 5.5e-56 221.9 157 70.7
BcaC08g44523 Brassica carinata HOM05D003441 ORTHO05D004516 4.7e-55 218.8 161 70.2
CAN.G532.8 Capsicum annuum HOM05D003441 ORTHO05D004516 8.0e-55 218.0 153 71.2
MBI04_g41820_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 1.0e-54 217.6 156 71.2
C06p19750 Brassica napus HOM05D003441 ORTHO05D004516 1.8e-54 216.9 169 67.5
Mapoly0037s0100 Marchantia polymorpha HOM05D003441 ORTHO05D004516 1.8e-54 216.9 155 70.3
MBI04_g35068_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 2.3e-54 216.5 156 71.2
Cfa012202 Carpinus fangiana HOM05D003441 ORTHO05D004516 2.6e-53 213.0 160 68.8
Nitab4.5_0001522g0040 Nicotiana tabacum HOM05D003441 ORTHO05D004516 3.4e-53 212.6 160 69.4
Nitab4.5_0004114g0020 Nicotiana tabacum HOM05D003441 ORTHO05D004516 4.4e-53 212.2 160 68.8
Peaxi162Scf00074g02032 Petunia axillaris HOM05D003441 ORTHO05D004516 5.7e-53 211.8 160 68.8
Nitab4.5_0002290g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.7e-52 210.3 176 61.9
unitig_62.g23538 Utricularia gibba HOM05D003441 ORTHO05D004516 1.7e-52 210.3 162 66.0
Lj2C182G1 Lonicera japonica HOM05D003441 ORTHO05D004516 3.7e-52 209.1 184 64.7
Nitab4.5_0004008g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 4.9e-52 208.8 227 52.0
SGA_v2.0_scaffold144G35916 Striga asiatica HOM05D003441 ORTHO05D004516 6.3e-52 208.4 161 67.7
Oeu030097.4 Olea europaea HOM05D003441 ORTHO05D004516 8.3e-52 208.0 112 88.4
COL.COLO4_31600 Corchorus olitorius HOM05D003441 ORTHO05D022097 1.4e-51 207.2 112 87.5
FAN01G0379 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.4e-51 207.2 128 85.9
PGSC0003DMG400026783 Solanum tuberosum HOM05D003441 ORTHO05D004516 1.4e-51 207.2 156 67.3
Sabra01G0076300 Salix brachista HOM05D003441 ORTHO05D004516 1.8e-51 206.8 180 62.2
FAN08G0848 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.4e-51 205.3 227 53.7
SMO115G0252 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 5.4e-51 205.3 155 65.2
DCAR_005566 Daucus carota HOM05D003441 ORTHO05D004516 7.0e-51 204.9 161 67.7
Cc08_g15010 Coffea canephora HOM05D003441 ORTHO05D004516 5.9e-50 201.8 168 62.5
PGSC0003DMG400012332 Solanum tuberosum HOM05D003441 ORTHO05D004516 7.8e-50 201.4 160 66.2
ClCG01G002520 Citrullus lanatus HOM05D003441 ORTHO05D004516 2.9e-49 199.5 153 68.0
Cre06.g297016 Chlamydomonas reinhardtii HOM05D003441 ORTHO05D004516 6.6e-49 198.4 152 65.8
FAN01G2616 Fragaria x ananassa HOM05D003441 ORTHO05D022097 1.1e-48 197.6 124 79.0
PRCOL_00001151 Prasinoderma coloniale HOM05D003441 ORTHO05D004516 2.5e-48 196.4 153 63.4
FAN13G0171 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.1e-43 181.0 157 58.0
FAN08G2634 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.8e-43 180.3 157 57.3
FAN04G2533 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.4e-43 179.9 157 58.0
FvH4_5g19430 Fragaria vesca HOM05D003441 ORTHO05D004516 7.0e-43 178.3 126 67.5
SMO347G0324 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 1.1e-40 171.0 123 68.3
MCO01G486 Micromonas commoda HOM05D003441 ORTHO05D004516 1.5e-40 170.6 150 56.0
Lsat_1_v5_gn_2_120601 Lactuca sativa HOM05D003441 ORTHO05D004516 7.3e-40 168.3 104 79.8
Haze_26458 Corylus avellana HOM05D003441 ORTHO05D004516 4.0e-38 162.5 166 53.0
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.2e-34 151.0 188 50.0
Gohir.D11G022333 Gossypium hirsutum HOM05D003441 ORTHO05D004516 6.0e-34 148.7 109 71.6
ECA246G1863 Erigeron canadensis HOM05D003441 ORTHO05D004516 1.5e-32 144.1 96 71.9
SMO163G0061 Selaginella moellendorffii HOM05D003441 ORTHO05D022097 1.5e-32 144.1 108 61.1
FAN03G2549 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.9e-32 143.7 105 72.4
PSO478G5020 Papaver somniferum HOM05D003441 ORTHO05D004516 4.3e-32 142.5 103 72.8
arahy.Tifrunner.gnm1.ann1.ZIDD3N Arachis hypogaea HOM05D003441 ORTHO05D004516 3.4e-29 132.9 104 71.2
CDE12G0607 Ceratophyllum demersum HOM05D003441 ORTHO05D004516 5.8e-29 132.1 91 69.2
Cfa023957 Carpinus fangiana HOM05D003441 ORTHO05D004516 5.1e-25 119.0 153 42.5
RcHm_v2.0_Chr7g0203931 Rosa chinensis HOM05D003441 ORTHO05D004516 8.6e-25 118.2 159 42.8
SEGI_39024 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 1.8e-22 110.5 114 51.8
Lsat_1_v5_gn_7_95160 Lactuca sativa HOM05D003441 ORTHO05D005003 1.5e-21 107.5 64 82.8
arahy.Tifrunner.gnm1.ann1.U109MR Arachis hypogaea HOM05D003441 ORTHO05D004516 4.9e-20 102.4 103 60.2
CARHR183180 Cardamine hirsuta HOM05D003441 ORTHO05D004516 8.1e-15 85.1 71 60.6
BolC6t37162H Brassica oleracea HOM05D003441 ORTHO05D022097 9.0e-14 81.6 49 71.4
CBR_g34305 Chara braunii HOM05D003441 ORTHO05D004516 9.9e-13 78.2 89 48.3
Lsat_1_v5_gn_1_103221 Lactuca sativa HOM05D002170 ORTHO05D005003 2.2e-12 77.0 48 77.1
HPP92_022012 Vanilla planifolia HOM05D003441 ORTHO05D004516 3.8e-12 76.3 66 59.1
Actinidia14580 Actinidia chinensis HOM05D003441 ORTHO05D004516 1.3e-09 67.8 64 60.9
BolC6t37163H Brassica oleracea HOM05D003441 ORTHO05D004516 3.3e-08 63.2 64 53.1


User provided reference genes

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