Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3485 Fragaria x ananassa HOM05D002159 ORTHO05D017878 1.5e-83 312.8 150 100.0
FvH4_7g30021 Fragaria vesca HOM05D002159 ORTHO05D017878 6.8e-81 303.9 151 98.0
FAN06G2653 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.6e-53 213.0 150 74.0
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 2.5e-43 179.1 316 39.2
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.5e-43 179.1 316 39.2
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.5e-43 179.1 316 39.2
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.5e-43 179.1 316 39.2
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.5e-43 179.1 316 39.2
RcHm_v2.0_Chr1g0377681 Rosa chinensis HOM05D002159 ORTHO05D005625 7.3e-43 177.6 316 38.9
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 3.6e-42 175.3 316 39.6
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 9.0e-41 170.6 322 38.2
MD01G1203600 Malus domestica HOM05D002159 ORTHO05D005625 3.7e-34 148.7 327 33.9
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 1.4e-33 146.7 315 34.3
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 2.4e-33 146.0 316 34.2
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 9.9e-32 140.6 319 32.6
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 4.9e-31 138.3 316 33.2
VMungo0464G2116 Vigna mungo HOM05D002159 ORTHO05D005625 1.9e-30 136.3 316 32.9
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 3.2e-30 135.6 316 32.0
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 4.2e-30 135.2 317 32.2
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 4.2e-30 135.2 316 32.9
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 9.3e-30 134.0 314 31.8
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 9.3e-30 134.0 316 32.6
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 1.2e-29 133.7 315 32.7
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 3.5e-29 132.1 314 30.9
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 3.5e-29 132.1 314 32.5
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 6.0e-29 131.3 315 32.7
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 7.9e-29 131.0 314 31.8
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 1.0e-28 130.6 314 32.8
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 1.0e-28 130.6 315 31.7
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 1.8e-28 129.8 316 31.6
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 2.3e-28 129.4 315 29.8
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 2.3e-28 129.4 316 31.3
Potri.001G231800 Populus trichocarpa HOM05D002159 ORTHO05D005625 3.9e-28 128.6 317 31.5
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 5.1e-28 128.3 330 30.6
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 5.1e-28 128.3 317 31.5
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 1.5e-27 126.7 312 30.8
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 1.9e-27 126.3 315 31.4
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 2.5e-27 125.9 315 31.4
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 3.3e-27 125.6 314 31.8
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 4.3e-27 125.2 315 30.5
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 7.4e-27 124.4 317 31.9
Dinv28421 Davidia involucrata HOM05D002159 ORTHO05D005625 1.3e-26 123.6 317 29.3
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 1.3e-26 123.6 317 30.3
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 2.1e-26 122.9 317 31.5
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 3.7e-26 122.1 317 30.3
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 4.8e-26 121.7 303 30.7
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 4.8e-26 121.7 303 30.7
arahy.Tifrunner.gnm1.ann1.F9YRCX Arachis hypogaea HOM05D002159 ORTHO05D005625 1.1e-25 120.6 317 31.2
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 3.1e-25 119.0 316 30.7
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 3.1e-25 119.0 316 30.1
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 9.0e-25 117.5 316 30.1
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 9.0e-25 117.5 317 30.6
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 2.6e-24 115.9 316 29.4
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 2.6e-24 115.9 316 29.7
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 4.5e-24 115.2 315 29.5
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 7.6e-24 114.4 312 30.1
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 7.6e-24 114.4 317 29.7
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 7.6e-24 114.4 315 28.9
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.3e-23 113.6 315 30.5
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 1.7e-23 113.2 317 28.4
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 1.7e-23 113.2 317 29.3
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 1.7e-23 113.2 316 29.7
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 2.2e-23 112.8 316 29.1
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 2.9e-23 112.5 316 29.1
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 2.9e-23 112.5 316 29.1
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 2.9e-23 112.5 316 29.1
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 2.9e-23 112.5 316 29.1
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 2.9e-23 112.5 316 29.4
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 2.9e-23 112.5 318 29.2
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 3.8e-23 112.1 316 29.1
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 3.8e-23 112.1 315 28.6
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 4.9e-23 111.7 318 30.5
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 6.5e-23 111.3 315 29.8
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 6.5e-23 111.3 316 29.4
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 6.5e-23 111.3 317 28.7
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 1.1e-22 110.5 312 29.2
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 1.4e-22 110.2 77 71.4
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 1.4e-22 110.2 314 29.6
Os09g0569400 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D005625 1.4e-22 110.2 315 29.2
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 1.9e-22 109.8 316 28.8
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 3.2e-22 109.0 77 70.1
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 3.2e-22 109.0 318 28.9
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 4.2e-22 108.6 315 27.9
Cc02_g02790 Coffea canephora HOM05D002159 ORTHO05D005625 1.2e-21 107.1 314 28.3
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 1.6e-21 106.7 314 28.7
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 2.7e-21 105.9 76 68.4
Sabra16G0139100 Salix brachista HOM05D002159 ORTHO05D005625 2.7e-21 105.9 78 64.1
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 6.0e-21 104.8 314 28.3
Glyma.11G171003 Glycine max HOM05D002159 ORTHO05D005625 7.9e-21 104.4 74 67.6
BcaNung05470 Brassica carinata HOM05D002159 ORTHO05D005625 1.0e-20 104.0 300 27.7
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 1.3e-20 103.6 83 60.2
AL6G35160 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 1.8e-20 103.2 76 67.1
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 3.0e-20 102.4 315 27.9
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 5.1e-20 101.7 316 27.5
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 5.1e-20 101.7 77 63.6
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 1.5e-19 100.1 314 27.4
Glyma.11G170601 Glycine max HOM05D002159 ORTHO05D005625 4.3e-19 98.6 60 75.0
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 5.7e-19 98.2 73 68.5
MD01G1203700 Malus domestica HOM05D000507 ORTHO05D000416 5.7e-19 98.2 59 76.3
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 7.4e-19 97.8 76 60.5
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 7.4e-19 97.8 74 64.9
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 1.3e-18 97.1 317 28.7
COL.COLO4_28055 Corchorus olitorius HOM05D002159 ORTHO05D017878 4.8e-18 95.1 60 70.0
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 6.3e-18 94.7 76 61.8
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 8.2e-18 94.4 317 25.9
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 5.3e-17 91.7 72 61.1
MELO3C035667.2 Cucumis melo HOM05D002159 ORTHO05D017878 2.0e-16 89.7 60 66.7
Lj1E1000G1 Lonicera japonica HOM05D002159 ORTHO05D017878 4.5e-16 88.6 59 71.2
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 2.9e-15 85.9 315 26.0
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 3.8e-15 85.5 70 54.3
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 8.5e-15 84.3 82 50.0
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 9.3e-14 80.9 71 59.2
Oeu028430.1 Olea europaea HOM05D002159 ORTHO05D005625 2.1e-13 79.7 60 58.3
Actinidia34126 Actinidia chinensis HOM05D002159 ORTHO05D005625 2.7e-13 79.3 59 62.7
HPP92_025761 Vanilla planifolia HOM05D002159 ORTHO05D005625 2.7e-13 79.3 70 55.7
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 6.7e-12 74.7 74 47.3
RcHm_v2.0_Chr1g0379171 Rosa chinensis HOM05D002159 ORTHO05D005625 1.9e-11 73.2 79 55.7
RcHm_v2.0_Chr1g0379341 Rosa chinensis HOM05D002159 ORTHO05D005625 1.9e-11 73.2 79 55.7
FAN18G0300 Fragaria x ananassa HOM05D002159 ORTHO05D005625 5.7e-11 71.6 66 57.6
SEGI_18447 Sequoiadendron giganteum HOM05D002159 ORTHO05D017878 2.8e-10 69.3 60 56.7
RcHm_v2.0_Chr1g0379161 Rosa chinensis HOM05D002159 ORTHO05D005625 8.2e-10 67.8 63 58.7
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 1.1e-09 67.4 50 56.0
MELO3C033916.2 Cucumis melo HOM05D002159 ORTHO05D017878 2.0e-08 63.2 55 56.4
RcHm_v2.0_Chr1g0378701 Rosa chinensis HOM05D002159 ORTHO05D005625 7.7e-08 61.2 36 80.6
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 1.3e-07 60.5 58 50.0
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 3.8e-07 58.9 44 54.5
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 1.1e-06 57.4 46 52.2
MD01G1204000 Malus domestica HOM05D000507 ORTHO05D000416 1.9e-06 56.6 34 76.5
CBR_g4749 Chara braunii HOM05D002159 ORTHO05D005625 3.2e-06 55.8 69 36.2


User provided reference genes

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