Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.6e-160 569.3 284 100.0
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.5e-153 546.2 286 96.2
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 6.7e-138 494.2 259 97.7
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.8e-111 406.4 218 95.0
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 5.9e-110 401.4 264 78.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 1.0e-109 400.6 260 79.6
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 3.0e-106 389.0 264 76.1
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.3e-104 383.6 220 90.5
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 3.3e-100 369.0 261 70.5
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 5.6e-100 368.2 259 72.2
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 6.1e-99 364.8 260 71.2
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.0e-98 364.0 263 68.8
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 9.8e-97 357.5 260 69.2
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.7e-96 356.7 259 69.9
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.4e-96 354.8 262 69.1
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.8e-95 353.2 274 63.9
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 4.1e-95 352.1 283 64.3
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 9.2e-95 350.9 264 68.2
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.2e-95 350.9 262 69.5
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 9.2e-95 350.9 262 69.5
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 7.8e-94 347.8 289 65.1
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.3e-93 346.3 267 74.9
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 5.0e-93 345.1 273 65.2
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 6.6e-93 344.7 271 66.4
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 6.6e-93 344.7 261 68.2
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.6e-91 340.1 262 67.9
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 1.6e-91 340.1 295 60.0
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.6e-91 340.1 251 70.9
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 4.7e-91 338.6 267 64.4
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 3.1e-90 335.9 263 65.8
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 3.1e-90 335.9 296 58.8
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 6.8e-90 334.7 276 62.7
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 8.9e-90 334.3 263 65.4
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 2.0e-89 333.2 265 66.8
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 2.6e-89 332.8 277 61.7
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 3.4e-89 332.4 301 60.5
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 9.8e-89 330.9 276 59.4
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 9.8e-89 330.9 267 62.9
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 1.3e-88 330.5 253 64.4
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.3e-88 330.5 260 65.0
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 1.7e-88 330.1 266 64.3
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 1.7e-88 330.1 263 65.4
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.2e-88 329.7 261 66.3
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.2e-88 329.7 261 66.3
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 2.2e-88 329.7 273 63.7
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 2.9e-88 329.3 267 62.9
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 3.7e-88 328.9 268 63.4
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 6.4e-88 328.2 200 75.5
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.1e-87 327.4 272 62.9
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.1e-87 327.4 261 64.0
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 1.4e-87 327.0 268 64.2
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 1.4e-87 327.0 268 64.2
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.9e-87 326.6 267 62.9
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 2.4e-87 326.2 258 63.6
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 2.4e-87 326.2 270 62.6
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 5.4e-87 325.1 266 63.9
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.2e-86 323.9 263 63.5
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.6e-86 323.6 261 65.9
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.6e-86 323.6 266 65.4
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.6e-86 323.6 267 63.3
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 4.6e-86 322.0 265 64.5
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 6.0e-86 321.6 266 62.8
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 7.8e-86 321.2 266 60.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 2.3e-85 319.7 264 62.9
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 3.0e-85 319.3 267 63.3
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 3.9e-85 318.9 264 62.5
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 5.0e-85 318.5 264 62.5
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 6.6e-85 318.2 181 84.0
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 8.6e-85 317.8 264 62.1
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 8.6e-85 317.8 264 62.1
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.9e-84 316.6 228 66.2
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 2.5e-84 316.2 271 61.3
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 2.5e-84 316.2 266 62.4
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 5.6e-84 315.1 267 59.9
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 5.6e-84 315.1 270 60.7
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.2e-83 313.9 284 57.0
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.6e-83 313.5 263 64.6
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 4.7e-83 312.0 261 62.1
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 4.7e-83 312.0 276 56.5
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 2.3e-82 309.7 259 61.4
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 5.2e-82 308.5 222 68.5
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 8.9e-82 307.8 229 65.9
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 2.6e-81 306.2 208 68.8
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 5.8e-81 305.1 264 60.2
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 1.3e-80 303.9 261 61.7
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.7e-80 303.5 236 64.4
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 2.9e-80 302.8 262 62.2
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 4.9e-80 302.0 271 57.9
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 8.3e-80 301.2 230 65.2
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 1.9e-79 300.1 224 68.3
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.9e-79 300.1 308 53.2
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.2e-78 297.4 312 51.9
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 3.5e-78 295.8 263 59.7
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 7.8e-78 294.7 266 57.9
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 7.8e-78 294.7 223 61.4
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 2.3e-77 293.1 266 59.4
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.9e-76 290.0 263 58.6
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 5.6e-76 288.5 276 54.0
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 3.6e-75 285.8 275 52.7
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 8.1e-75 284.6 225 64.9
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 8.1e-75 284.6 254 59.8
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 2.0e-73 280.0 259 56.0
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 2.6e-73 279.6 255 58.8
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.3e-69 266.5 268 54.5
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 4.3e-68 262.3 232 64.7
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.4e-66 257.3 179 65.9
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.0e-65 253.4 184 63.6
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.4e-63 247.3 255 56.9
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 1.6e-62 243.8 149 81.2
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.8e-59 232.3 162 69.8
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 8.1e-59 231.5 214 57.9
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.1e-58 231.1 264 47.3
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.1e-58 229.6 200 59.5
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.5e-57 227.3 201 59.7
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.9e-56 223.0 224 57.1
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 5.6e-52 208.8 160 61.2
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.6e-51 207.2 259 49.8
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.1e-50 204.5 270 42.6
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.2e-48 196.8 167 61.1
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 2.4e-47 193.4 229 45.4
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 2.4e-47 193.4 248 41.9
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.0e-45 188.0 170 59.4
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.1e-42 177.9 235 45.1
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.4e-42 177.6 109 74.3
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.7e-40 170.6 203 48.3
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.9e-40 169.9 195 49.7
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 2.5e-39 166.8 125 65.6
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 9.0e-34 148.3 254 37.4
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 9.0e-34 148.3 269 40.1
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 2.6e-33 146.7 98 70.4
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 2.2e-32 143.7 97 68.0
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.5e-31 140.2 141 54.6
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 5.7e-28 129.0 217 37.8
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 9.7e-28 128.3 199 41.2
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 6.3e-19 99.0 169 37.3
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 5.3e-18 95.9 215 30.7
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.3e-16 91.3 71 63.4
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 3.8e-16 89.7 212 30.7
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 4.7e-06 56.2 82 50.0


User provided reference genes

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