Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 2130.1 1058 100.0
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 2070.0 1115 93.2
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 2069.7 1062 97.0
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 2017.7 1062 94.8
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1967.2 1058 93.7
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1916.7 1069 89.9
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1711.0 1079 80.4
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1710.7 1083 80.2
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1686.8 1085 79.2
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1627.5 1094 75.9
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1622.8 1084 75.7
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1615.5 1099 74.3
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1604.3 1087 74.7
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1544.6 1082 71.3
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1536.5 1090 71.7
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1535.4 1087 71.8
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1535.4 1096 71.3
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1526.9 1086 71.4
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1522.3 1084 71.5
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1513.8 1083 70.9
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1512.3 1088 70.5
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1511.5 1087 71.0
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1500.0 1098 69.9
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1494.2 1078 70.8
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1491.9 1087 69.7
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1489.9 1078 70.3
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1488.4 1125 67.8
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1486.1 1083 70.0
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1484.2 1065 70.4
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1482.6 1113 69.2
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1478.8 1078 69.6
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1478.0 1076 69.4
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1477.6 1078 70.0
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1475.7 1080 70.6
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1475.3 1092 69.5
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1474.9 1087 69.9
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1474.5 1078 69.9
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1473.8 1078 69.6
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1473.0 1080 70.2
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1472.2 1000 73.3
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1471.4 1078 69.6
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1471.1 1113 68.7
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1470.3 1078 69.8
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1467.6 1186 66.9
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1466.4 1087 69.7
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1463.4 1086 68.5
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1461.0 1078 69.6
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1460.7 1106 67.4
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1457.6 1083 68.5
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1451.0 1116 67.5
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1449.9 1080 68.3
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1448.0 1038 71.0
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1446.8 1139 65.5
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1441.0 1116 66.1
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1440.6 1074 67.8
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1436.0 1019 70.5
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1428.7 1107 66.1
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1425.6 1091 67.9
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1421.4 1045 68.5
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1418.3 1077 67.1
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1412.9 1065 66.3
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1409.4 1069 67.8
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1405.2 1082 65.6
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1404.4 1081 65.6
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1392.1 1065 68.0
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1388.2 1074 65.3
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1385.9 1076 66.2
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1382.1 1067 66.4
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1379.8 1082 66.1
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1379.4 1074 66.6
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1361.7 1088 65.1
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1361.3 1200 59.8
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1353.6 872 76.0
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1353.2 871 75.9
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1352.4 1167 61.3
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1351.3 1077 65.3
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1349.3 1099 64.2
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1314.3 887 73.2
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1297.0 844 75.0
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1295.0 1072 61.0
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1290.4 871 73.1
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1281.5 860 73.0
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1281.2 1087 62.4
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1268.4 870 71.5
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1264.2 821 76.5
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1226.8 875 70.1
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1223.0 1085 59.5
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1222.6 920 67.7
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1212.6 1203 55.9
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1211.1 825 71.4
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1206.8 1087 58.7
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1187.6 1047 60.1
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1185.2 997 63.9
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1182.5 1006 63.4
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1174.5 1077 59.7
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1127.9 866 64.8
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 0.0e+00 1122.5 1039 56.9
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 4.5e-304 1048.1 700 74.1
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 1.4e-281 973.4 888 57.4
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 1.4e-265 920.2 1096 46.3
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.9e-262 909.8 645 69.5
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 2.2e-258 896.3 1071 46.3
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.3e-254 882.5 598 73.4
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 6.6e-247 858.2 968 47.0
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 9.9e-227 791.2 699 60.8
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 1.0e-215 754.6 498 75.3
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 9.0e-212 741.5 378 97.1
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.3e-210 737.6 952 43.7
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 2.9e-210 736.5 538 70.6
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 2.5e-161 573.9 472 62.9
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 9.4e-161 572.0 406 70.9
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 9.2e-148 528.9 1070 34.6
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 7.0e-132 476.1 320 72.2
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.2e-116 424.1 389 55.5
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 1.5e-94 352.1 223 77.6
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 3.4e-78 297.7 315 51.1
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.0e-74 284.6 225 68.4
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.4e-68 265.8 241 61.0
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 1.6e-59 235.7 211 60.7
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.2e-56 223.4 181 65.2
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 4.1e-55 221.1 174 64.4
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 8.5e-53 213.4 201 60.2
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.4e-50 206.1 217 56.7
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.8e-48 198.4 181 58.6
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 4.8e-48 197.6 202 60.9
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 3.8e-45 188.0 144 65.3
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 1.3e-37 162.9 166 54.2
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.3e-37 162.9 176 47.7
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 4.4e-33 147.9 94 72.3
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 1.3e-32 146.4 152 55.9
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 1.4e-31 142.9 84 81.0
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 1.6e-30 139.4 83 80.7
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 1.7e-29 136.0 159 54.1
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 8.6e-29 133.7 194 46.4
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.1e-27 129.0 89 68.5
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 2.8e-27 128.6 173 50.9
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.9e-24 118.6 102 54.9
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 3.7e-24 118.2 90 64.4
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.3e-24 117.1 100 56.0
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 4.1e-23 114.8 151 52.3
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 7.0e-23 114.0 99 56.6
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 2.0e-22 112.5 166 48.2
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 2.5e-20 105.5 170 38.8
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 6.8e-18 97.4 422 25.6
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 6.8e-18 97.4 111 49.5
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 4.9e-16 91.3 210 33.3
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 1.4e-15 89.7 528 24.8
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 1.9e-15 89.4 319 24.8
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 3.0e-13 82.0 73 58.9
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.6e-13 80.5 100 43.0
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 8.6e-13 80.5 67 56.7
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.1e-12 80.1 77 54.5
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 9.5e-12 77.0 52 69.2
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 9.5e-12 77.0 70 60.0
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.6e-11 75.1 53 66.0
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 4.7e-11 74.7 133 39.8
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 6.2e-11 74.3 55 67.3
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 2.6e-09 68.9 55 63.6
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 3.2e-07 62.0 190 27.9
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.6e-06 59.7 131 38.2
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.7e-06 58.9 50 56.0
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.5e-06 58.5 41 65.9


User provided reference genes

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