Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1714.1 858 100.0
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1699.5 858 99.3
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1690.6 858 98.8
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1682.9 917 93.3
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1671.4 917 91.8
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1653.3 858 95.7
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1533.9 861 87.8
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1526.5 853 87.3
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1463.7 858 83.0
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1419.1 854 80.4
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1417.1 854 80.6
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1414.8 860 80.0
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1413.7 855 80.4
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1412.1 860 79.9
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1411.7 860 80.0
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1409.8 861 79.3
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1409.0 854 79.7
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1406.7 861 79.1
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1406.3 855 79.9
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1406.0 854 79.9
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1404.8 854 80.1
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1404.4 858 79.7
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1403.3 858 79.8
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1402.5 860 79.4
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 863 80.3
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 862 79.4
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1387.1 855 78.9
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1385.5 861 79.4
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1382.9 861 78.0
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1382.1 861 78.0
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1381.7 862 78.8
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1375.5 879 77.0
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1375.5 866 78.8
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1369.4 858 78.1
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1369.0 854 79.4
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1358.2 856 77.6
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1357.0 865 78.5
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1355.1 856 77.5
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1352.4 862 77.6
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 861 77.4
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1347.0 864 76.6
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1347.0 857 77.1
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1343.2 862 76.8
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1342.8 920 72.8
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1342.4 862 76.7
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1339.7 863 76.0
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 862 75.5
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1331.6 856 76.5
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1320.8 906 72.3
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1319.7 936 71.6
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1318.1 871 74.6
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1315.1 861 74.8
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1313.9 863 75.2
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1313.5 861 75.0
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1312.7 861 74.6
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1311.2 861 75.4
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1310.4 884 73.4
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1309.7 867 75.1
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1309.3 867 75.7
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1308.1 861 74.7
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1304.7 920 71.8
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1302.7 858 74.7
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 854 74.2
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 854 74.7
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1297.3 859 73.8
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1294.6 861 74.1
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1290.0 871 72.8
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1289.6 872 73.3
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1286.6 876 73.9
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1283.5 872 72.9
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1283.5 872 72.9
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1283.5 872 72.9
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1282.7 872 72.9
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1281.9 872 72.8
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1281.9 872 72.8
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1280.4 872 72.8
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1279.6 864 73.4
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1279.6 963 67.4
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1278.5 872 72.7
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1272.7 872 72.5
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1272.7 884 72.5
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1268.1 871 72.3
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1265.4 854 72.5
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1244.2 779 78.4
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1237.6 804 74.9
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1228.4 853 69.4
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1215.7 869 68.4
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1210.7 854 70.3
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1205.3 743 79.4
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1106.7 861 66.0
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1105.5 853 67.3
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1077.8 855 60.2
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 7.6e-310 1067.0 855 60.9
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.6e-304 1049.3 868 64.6
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 6.6e-298 1027.3 893 60.2
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 6.4e-293 1010.7 1158 51.0
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 4.6e-291 1004.6 854 56.2
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 3.3e-273 945.3 622 74.0
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.8e-272 942.2 871 59.8
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 2.4e-271 939.1 703 69.6
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 5.0e-269 931.4 811 60.4
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 4.8e-248 861.7 745 62.8
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 2.7e-246 855.9 603 70.0
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.7e-221 773.5 692 60.4
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.1e-211 738.0 475 74.7
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 3.4e-193 679.5 480 72.5
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.9e-189 666.0 604 58.6
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 6.6e-189 665.2 449 75.1
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 8.1e-187 658.3 408 76.0
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 9.3e-175 618.2 871 40.5
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.9e-161 572.4 378 77.2
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.2e-159 566.2 359 75.5
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.1e-154 551.6 353 77.6
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.2e-153 548.1 861 37.7
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.8e-139 500.4 844 34.7
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-128 464.9 434 56.5
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.6e-118 431.4 587 46.5
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.6e-118 430.3 330 58.5
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 7.5e-116 422.5 1006 31.5
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 5.8e-108 396.4 383 58.5
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.4e-100 370.5 263 66.9
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 8.1e-94 349.4 345 51.0
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 5.4e-82 310.1 240 65.0
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.5e-79 301.2 218 68.8
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.1e-77 295.8 158 81.6
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.2e-75 288.1 333 46.5
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.6e-70 271.9 181 74.6
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.7e-43 182.2 97 88.7
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.3e-38 166.0 129 72.1
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 2.6e-36 158.3 113 68.1
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 5.1e-32 144.1 99 73.7
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 8.8e-32 143.3 97 76.3
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 8.2e-30 136.7 98 70.4
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-29 135.6 85 76.5
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.0e-29 133.7 119 55.5
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 2.0e-28 132.1 95 70.5
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 4.5e-28 131.0 67 86.6
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.0e-27 129.8 87 71.3
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.3e-27 129.4 188 47.3
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-26 126.3 117 54.7
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 8.8e-24 116.7 95 66.3
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 8.8e-24 116.7 118 60.2
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.5e-23 115.9 101 63.4
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 5.7e-23 114.0 80 67.5
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.7e-22 112.5 103 61.2
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.1e-21 109.8 113 54.9
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 7.0e-21 107.1 96 61.5
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 4.5e-20 104.4 66 69.7
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 2.5e-18 98.6 105 48.6
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 5.5e-18 97.4 96 56.2
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 4.0e-16 91.3 113 46.0
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 2.0e-15 89.0 52 78.8
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 4.4e-15 87.8 52 76.9
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.3e-14 86.3 87 52.9
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.3e-14 86.3 87 52.9
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-13 81.3 78 57.7
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 3.5e-12 78.2 50 76.0
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 3.8e-11 74.7 48 75.0
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 5.5e-10 70.9 37 91.9
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 5.5e-10 70.9 61 63.9
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.0e-08 66.6 70 52.9
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 8.8e-08 63.5 85 49.4
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-07 62.8 41 75.6
Rhsim07G0116000 Rhododendron simsii HOM05D000382 ORTHO05D037450 8.3e-06 57.0 82 47.6


User provided reference genes

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