Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0227 Fragaria x ananassa HOM05D001734 ORTHO05D003483 0.0e+00 1366.7 725 100.0
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 0.0e+00 1117.1 548 99.5
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 0.0e+00 1114.8 548 99.1
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 0.0e+00 1085.1 559 95.3
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 4.3e-290 1001.1 544 89.2
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 9.7e-242 840.5 549 74.7
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 6.1e-236 821.2 545 74.3
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 5.2e-227 791.6 564 68.3
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 3.4e-226 788.9 563 68.2
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 8.3e-217 757.7 600 63.5
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 1.1e-211 740.7 562 64.8
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 1.1e-211 740.7 560 65.5
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 4.0e-211 738.8 553 65.1
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 7.0e-208 728.0 552 65.9
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 1.0e-206 724.2 562 63.9
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 3.9e-206 722.2 549 62.7
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 8.6e-206 721.1 552 65.0
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 1.1e-205 720.7 549 64.3
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 3.4e-202 709.1 548 64.1
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 3.4e-202 709.1 551 64.2
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 6.4e-201 704.9 548 62.2
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 1.1e-200 704.1 549 62.3
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 1.4e-200 703.7 551 61.3
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 9.2e-200 701.0 548 62.0
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 1.6e-199 700.3 551 60.8
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 5.1e-198 695.3 553 62.7
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 8.6e-198 694.5 553 62.9
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 5.6e-197 691.8 552 61.6
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 1.1e-195 687.6 552 61.8
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 5.2e-195 685.3 553 62.6
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 3.4e-194 682.6 565 59.1
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 8.4e-193 677.9 549 59.7
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 7.8e-191 671.4 549 59.9
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 9.6e-189 664.5 502 65.3
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 9.6e-189 664.5 565 58.1
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 6.2e-188 661.8 561 58.1
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 2.0e-186 656.8 646 52.3
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 1.3e-185 654.1 563 57.4
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 3.5e-183 646.0 550 58.2
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 1.8e-179 633.6 555 56.2
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 5.3e-179 632.1 550 56.7
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 1.3e-177 627.5 562 55.3
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 9.3e-176 621.3 552 56.5
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 2.1e-175 620.2 550 55.3
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 1.3e-174 617.5 547 56.7
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 3.3e-173 612.8 553 55.3
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 2.1e-172 610.1 558 53.4
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 1.2e-170 604.4 562 53.4
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.2e-170 604.4 560 55.7
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 4.5e-170 602.4 548 54.0
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 2.2e-169 600.1 562 52.7
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 3.8e-169 599.4 541 56.4
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 4.2e-168 595.9 558 52.3
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 7.1e-168 595.1 482 62.9
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 4.3e-165 585.9 563 52.9
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 1.6e-164 583.9 454 63.0
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 4.8e-164 582.4 567 52.0
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 1.4e-163 580.9 548 51.8
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 1.4e-163 580.9 548 51.8
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 1.8e-163 580.5 548 52.0
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 3.8e-161 572.8 572 51.2
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 4.9e-161 572.4 548 51.1
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 2.3e-158 563.5 572 51.0
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 5.1e-158 562.4 548 53.5
CAN.G1305.20 Capsicum annuum HOM05D001734 ORTHO05D003483 4.1e-155 552.7 577 50.8
vmacro19389 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 1.0e-153 548.1 449 59.7
Ca_16175_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.6e-151 540.8 428 61.0
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 1.4e-150 537.7 561 52.4
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 5.1e-150 535.8 421 62.9
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 2.4e-147 526.9 496 52.6
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 2.5e-144 516.9 566 49.5
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 6.3e-140 502.3 567 47.1
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 3.9e-134 483.0 547 46.1
TPR.G6095 Trifolium pratense HOM05D001734 ORTHO05D003483 6.3e-132 475.7 411 58.2
VMungo1309G1926 Vigna mungo HOM05D000002 ORTHO05D000001 2.7e-127 460.3 480 50.2
Lj9A448T39 Lonicera japonica HOM05D001734 ORTHO05D003483 9.1e-123 445.3 409 56.0
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 4.5e-122 443.0 558 41.8
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 9.4e-120 435.3 561 40.5
Lalb_Chr08g0236521 Lupinus albus HOM05D001734 ORTHO05D003483 4.1e-115 419.9 372 58.3
PSO732G0258 Papaver somniferum HOM05D001734 ORTHO05D003483 2.7e-114 417.2 365 57.3
Cpa.g.sc1166.1 Carica papaya HOM05D001734 ORTHO05D003483 2.2e-108 397.5 334 59.9
ATR0730G017 Amborella trichopoda HOM05D001734 ORTHO05D003483 4.9e-108 396.4 425 48.0
Hund02745 Selenicereus undatus HOM05D001734 ORTHO05D003483 9.5e-104 382.1 337 56.4
BcaNung06699 Brassica carinata HOM05D001734 ORTHO05D003483 6.0e-98 362.8 338 53.0
Migut.C00312 Erythranthe guttata HOM05D001734 ORTHO05D003483 7.0e-91 339.3 354 51.1
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 5.6e-88 329.7 554 34.3
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 2.5e-80 304.3 546 32.6
Nitab4.5_0000984g0080 Nicotiana tabacum HOM05D001734 ORTHO05D003483 3.4e-77 293.9 291 52.6
CDE07G0247 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 6.4e-76 289.7 271 51.3
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 2.4e-70 271.2 272 51.5
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 2.0e-69 268.1 552 32.4
SEGI_17988 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 2.2e-68 264.6 335 42.4
Rhsim06G0125200 Rhododendron simsii HOM05D001734 ORTHO05D003483 7.6e-61 239.6 254 51.2
SHI17017 Sapria himalayana HOM05D001734 ORTHO05D003483 6.4e-60 236.5 233 52.8
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.7e-58 231.1 292 46.9
COL.COLO4_30229 Corchorus olitorius HOM05D001734 ORTHO05D003483 1.9e-48 198.4 358 36.3
Rhsim02G0151200 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.3e-47 195.7 243 45.3
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 3.1e-46 191.0 145 62.8
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 9.0e-38 162.9 119 67.2
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 1.2e-37 162.5 257 40.1
Lj9A448G32 Lonicera japonica HOM05D001734 ORTHO05D003483 2.5e-32 144.8 101 65.3
arahy.Tifrunner.gnm1.ann1.1I6Y5K Arachis hypogaea HOM05D001734 ORTHO05D003483 2.6e-29 134.8 111 54.1
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 1.3e-28 132.5 97 60.8
CBR_g286 Chara braunii HOM05D000004 ORTHO05D000002 3.0e-25 121.3 223 34.1
TPR.G5903 Trifolium pratense HOM05D001734 ORTHO05D003483 2.0e-24 118.6 95 58.9
SHI17018 Sapria himalayana HOM05D000105 ORTHO05D000023 5.7e-24 117.1 185 35.1
arahy.Tifrunner.gnm1.ann1.BK2P93 Arachis hypogaea HOM05D001734 ORTHO05D003483 2.8e-23 114.8 188 37.2
Rhsim06G0125100 Rhododendron simsii HOM05D001734 ORTHO05D003483 3.7e-23 114.4 85 62.4
MD14G1180200 Malus domestica HOM05D001734 ORTHO05D003483 5.3e-22 110.5 94 57.4
Lalb_Chr08g0236511 Lupinus albus HOM05D001734 ORTHO05D003483 7.2e-19 100.1 89 60.7
arahy.Tifrunner.gnm1.ann1.EMU6Q2 Arachis hypogaea HOM05D001734 ORTHO05D003483 2.3e-17 95.1 114 43.9
SEGI_06250 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 7.4e-16 90.1 86 44.2
SEGI_28316 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 7.4e-16 90.1 127 36.2
TPR.G21158 Trifolium pratense HOM05D001734 ORTHO05D003483 7.4e-16 90.1 73 56.2
FAN05G4580 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.7e-15 89.0 42 95.2
Rhsim02G0102600 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.8e-15 88.2 109 42.2
TPR.G5917 Trifolium pratense HOM05D001734 ORTHO05D003483 6.3e-15 87.0 67 64.2
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 1.8e-14 85.5 51 74.5
TPR.G18427 Trifolium pratense HOM05D001734 ORTHO05D003483 5.5e-11 73.9 53 62.3
unitig_0.g1441 Utricularia gibba HOM05D001734 ORTHO05D003483 2.0e-08 65.5 79 43.0
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 1.1e-06 59.7 105 34.3
EL10Ac4g08521 Beta vulgaris HOM05D002517 ORTHO05D089009 3.1e-06 58.2 91 40.7
AUR62030960 Chenopodium quinoa HOM05D001734 ORTHO05D003483 3.1e-06 58.2 105 34.3
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 9.1e-06 56.6 98 36.7
Nitab4.5_0000984g0090 Nicotiana tabacum HOM05D001734 ORTHO05D003483 9.1e-06 56.6 96 37.5


User provided reference genes

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